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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7328#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1149 fasta sequence
[CTTGTGGGTACTGTTGTATCAGGTGTTATTGGATGCATAATGGCAGCAGTATTCAGTTTACAAGATCTAGTTGATATGATGTCAATCGGAACACTTCTTGCTTATACTCTAGTGTCTGTTTCTGTGCTTCTTTTGAGAGGACAACAAATGTCCATTGGATATTGCCTTAATAACATTAAAGATTGTACAGAAGTATTGATGGACGATGAAAAATGGCCAGGTGGTAAATTATCCTTATCTGATGAAAAATTATATCCACTCAAGATTTTGAATAAAATGACAGACAATACACTTAGTAGTAATAAAGAACGATCGAATGGTTTTGATGAATATTCCGATCGTGATAAACTCTCTGTTTCCCCAAATAACATTGATAATCCAAGTTTATCAAAGGCCTTGAAACAAACAAACAATTCATCACTTACGGATAATATTCATCTCAACATTTCAAGTTACTTCCAAAGATGTTTCAAGCTTGAACCTGGTCTAGATAAACCATCTAAAACTACTGAATTAATCTATAAAATAAATAGTTACTTATTACTTTGCTTCATTTTTCTTGGNCATCTGGGTATATTACTGTTAGNNATAACTACCTGAAGAGGCAACAAAAAATATGATAGTCACGGTCCCAATATGGACGTTTGTTGGATTAATGATACTGGTCAGTATCATCATTTGTTCAGCATTAGCCAGAACACCAGAAAATCAAACACCTGTGGCATTCAAAGTCCCTGGGGTTCCATGGATACCCGCTATTAGTATATTTATCAATGCATATCTAATGGTTAAATTATCGGGGGCTACGTGGATTAGATTCTTAGTTTGGATGATTATTGGTTTCGCAATCTACTTTGGTTATGGATACTGGCCCAGTAGAGAGAGAAAAAG-AAGAAGTAATTTGTTATAACCATTTTTTTAAAGCAACTATTCATAATATAGAAGCATTTTATCAATTCACAGAAGTAATAGAGTTTATTTTACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATACCCTATGAACAATTTGTTTTTATTTGAAGTTTAAACAACAAATGATTTTTACTTTGCACCAATTAAAATA]
[+] EMBL CD078712 [CTTGTGGGTACTGTTGTATCAGGTGTTATTGGATGCATAATGGCAGCAGTATTCAGTTTACAAGATCTAGTTGATATGATGTCAATCGGAACACTTCTTGCTTATACTCTAGTGTCTGTTTCTGTGCTTCTTTTGAGAGGACAACAAATGTCCATTGGATATTGCCTTAATAACATTAAAGATTGTACAGAAGTATTGATGGACGATGAAAAATGGCCAGGTGGTAAATTATCCTTATCTGATGAAAAATTATATCCACTCAAGATTTTGAATAAAATGACAGACAATACACTTAGTAGTAATAAAGAACGATCGAATGGTTTTGATGAATATTCCGATCGTGATAAACTCTCTGTTTCCCCAAATAACATTGATAATCCAAGTTTATCAAAGGCCTTGAAACAAACAAACAATTCATCACTTACGGATAATATTCATCTCAACATTTCAAGTTACTTCCAAAGATGTTTCAAGCTTGAACCTGGTCTAGATAAACCATCTAAAACTACTGAATTAATCTATAAAATAAATAGTTACTTATTACTTTGCTTCATTTTTCTTGGNCATCTGGGTATATTACTGTTAGNNATAACTACCTG ]
[+] EMBL CD083826 [ AGAAGTATTGATGGACGATGAAAAATGGCCAGGTGGTAAATTATCCTTATCTGATGAAAAATTATATCCACTCAAGATTTTGAATAAAATGACAGACAATACACTTAGTAGTAATAAAGAACGATCGAATGGTTTTGATGAATATTCCGATCGTGATAAACTCTCTGTTTCCCCAAATAACATTGATAATCCAAGTTTATCAAAGGCCTTGAAACAAACAAACAATTCATCACTTACGGATAATATTCATCTCAACATTTCAAGTTACTTCCAAAGATGTTTCAAGCTTGAACCTGGTCTAGATAAACCATCTAAAACTACTGAATTAATCTATAAAATAAATAGTTACTTATTACTTTGCTTCATTTTTCTTGGCAATCTGGGTATATTACTGTTAGATA AACTACCTGAAGAGGCAACAAAAAATATGATAGTCACGGTCCCAATATGGACGTTTGTTGGATTAATGATACTGGTCAGTATCATCATTTGTTCAGCATTAGCCAGAACACCAG ]
[-] EMBL CD073175 [ CCTGAAGAGGCAACAAAAAATATGATAGTCACGGTCCCAATATGGACGTTTGTTGGATTAATGATACTGGTCAGTATCATCATTTGTTCAGCATTAGCCAGACAACCAGAAAATCAAACACCTGTGGCATTCAAAGTCCCTGGGGTTCCATGGATACCCGCTATTAGTATATTTATCAATGCATATCTAATGGTTAAATTATCGGGGGCTACGTGGATTAGATTCTTAGTTTGGATGATTATTGGTTTCGCAATCTACTTTGGTTATGGATACTGGCCCAGTAGAGAGAGAAAAAG AAGAAGTAATTTGTTATAACCATTTTTTTAAAGCAACTATTCATAATATAGAAGCATTTTATCAATTCACAGAAGTAATAGAGTTTATTTTACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATACCCTATGAACAATTTGTTTTTATTTGAAGTTTAAACAACAAATGATTTTTACTTTGCACCAATTAAAATA]
[-] EMBL CD137891 [ TATTAGTATATTTATCAATGCATATCTAATGGTTAAATTATCGGGGGCTACGTGGATTAGATTCTTAGTTTGGATGATTATTGGTTTCGCAATCTACTTTGGTTATGGATACTGGCACAGTAGAGAGAGAAAAAGAAAGAAGTAATTTGTTATAACCATTTTCTTAAAGCAACTATTCATAATATAGAAGCATCTTATCAATTCACAGAAGTAATAGAGTTTATTTTACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTT ]
consensusID : consensus_7328#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 458 fasta sequence
[AATTTATTGATATTTTCATTCACGCGAGTATGAAGAGATTATTGAGGAGGGAGGGAATTCTTTAGATTTGAGAGGAGTTTCGCAATCTACTTTGGTTATGGATACTGGCNCAGTAGAGAGAGAAAAAGAAAGAAGTATTTTGTTATAACCATTTTCTTAAAGCAACTATTCATAATATAGAAGCATCTTATCAATTCACAGAAGTAATAGAGTTTATTTAACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATACCCTATGAACAATTTGTTTTTATTTGAAGTCTAAACAACAAATGATTTCTACTTTGCACCAATTAAAATATAAATCTATAAAATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
[-] EMBL AI977001 [AATTTATTGATATTTTCATTCACGCGAGTATGAAGAGATTATTGAGGAGGGAGGGAATTCTTTAGATTTGAGAGGAGTTTCGCAATCTACTTTGGTTATGGATACTGGCNCAGTAGAGAGAGAAAAAGAAAGAAGTATTTTGTTATAACCATTTTCTTAAAGCAACTATTCATAATATAGAAGCATCTTATCAATTCACAGAAGTAATAGAGTTTATTTAACATATTTTTTTTGATTATTTTAATTACTGTTACTAATATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATACCCTATGAACAATTTGTTTTTATTTGAAGTCTAAACAACAAATGATTTCTACTTTGCACCAATTAAAATATAAATCTATAAAATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCAGCTGCATTACCGTACTGCGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7328#0 CTTGTGGGTACTGTTGTATCAGGTGTTATTGGATGCATAATGGCAGCAGTATTCAGTTTA 60
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 CAAGATCTAGTTGATATGATGTCAATCGGAACACTTCTTGCTTATACTCTAGTGTCTGTT 120
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 TCTGTGCTTCTTTTGAGAGGACAACAAATGTCCATTGGATATTGCCTTAATAACATTAAA 180
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 GATTGTACAGAAGTATTGATGGACGATGAAAAATGGCCAGGTGGTAAATTATCCTTATCT 240
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 GATGAAAAATTATATCCACTCAAGATTTTGAATAAAATGACAGACAATACACTTAGTAGT 300
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 AATAAAGAACGATCGAATGGTTTTGATGAATATTCCGATCGTGATAAACTCTCTGTTTCC 360
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 CCAAATAACATTGATAATCCAAGTTTATCAAAGGCCTTGAAACAAACAAACAATTCATCA 420
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 CTTACGGATAATATTCATCTCAACATTTCAAGTTACTTCCAAAGATGTTTCAAGCTTGAA 480
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 CCTGGTCTAGATAAACCATCTAAAACTACTGAATTAATCTATAAAATAAATAGTTACTTA 540
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 TTACTTTGCTTCATTTTTCTTGGNCATCTGGGTATATTACTGTTAGNNATAACTACCTGA 600
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 AGAGGCAACAAAAAATATGATAGTCACGGTCCCAATATGGACGTTTGTTGGATTAATGAT 660
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 ACTGGTCAGTATCATCATTTGTTCAGCATTAGCCAGAACACCAGAAAATCAAACACCTGT 720
consensus_7328#1 ------------------------------------------------------------
consensus_7328#0 GGCATTCAAAGTCCCTGGGGTTCCATGGATACCCGCTATTAGTATATTTATCAATGCATA 780
consensus_7328#1 --------------------------------AATTTATTGATATTTTCATTCACGCGAG 28
**** *** ** ** * **
consensus_7328#0 TCTAATGGTTAAATTATCGGGGGCTACGTGGATTAGATTCTTAGTTTGGATGATTATTGG 840
consensus_7328#1 T---ATGAAGAGATTATTGAGGAGGGAGGGAATT---CTTTAGATTTGAGAGG-----AG 77
* *** * ***** * ** * * *** * * **** * *
consensus_7328#0 TTTCGCAATCTACTTTGGTTATGGATACTGGCCCAGTAGAGAGAGAAAAAGAA-GAAGTA 899
consensus_7328#1 TTTCGCAATCTACTTTGGTTATGGATACTGGCNCAGTAGAGAGAGAAAAAGAAAGAAGTA 137
******************************** ******************** ******
consensus_7328#0 ATTTGTTATAACCATTTTTTTAAAGCAACTATTCATAATATAGAAGCATTTTATCAATTC 959
consensus_7328#1 TTTTGTTATAACCATTTTCTTAAAGCAACTATTCATAATATAGAAGCATCTTATCAATTC 197
***************** ****************************** **********
consensus_7328#0 ACAGAAGTAATAGAGTTTATTTTACATATTTTTTTTGATTATTTTAATTACTGTTACTAA 1019
consensus_7328#1 ACAGAAGTAATAGAGTTTATTTAACATATTTTTTTTGATTATTTTAATTACTGTTACTAA 257
********************** *************************************
consensus_7328#0 TATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATA 1079
consensus_7328#1 TATTCTTGCACATTTGTATGAATTTTTCTATCCAATATTTGATTCTCTTATGAAACAATA 317
************************************************************
consensus_7328#0 CCCTATGAACAATTTGTTTTTATTTGAAGTTTAAACAACAAATGATTTTTACTTTGCACC 1139
consensus_7328#1 CCCTATGAACAATTTGTTTTTATTTGAAGTCTAAACAACAAATGATTTCTACTTTGCACC 377
****************************** ***************** ***********
consensus_7328#0 AATTAAAATA-------------------------------------------------- 1149
consensus_7328#1 AATTAAAATATAAATCTATAAAATAAAAAAAAAAAAAAAAAAAAAAAAACATGCCATGCA 437
**********
consensus_7328#0 ---------------------
consensus_7328#1 GCTGCATTACCGTACTGCGTA 458
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||