cluster # 733

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Schistosoma mansoni
cluster # 733 cluster # 733 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_733#0 length = 940 sequences # 1

consensus_733#1 length = 575 sequences # 1

consensusID : consensus_733#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 940
fasta sequence

                              [CCACGAGGCCAANAATTCGGCACGAGGGTTATGTTAAAGCCGGAGATTGGGATTGGGCATCCTGGAATAATTACCTGAGTTGGATCGCCCGCACCAATCCTCAGTGGTATGAAATATTTGTGAATTTAAGCCGAGGACTCGGCATAGATTGGGATGACATGTATAAAAAGTGGGTCAGCTCGGTGTCAGGGGATTCCAGCTGCAATAAAAACCCACCTATGTCTTATTGTGAGTTAAAATTGTTGTACTTATGGTTTCTATCTTTAAGGGAGTGACTATCATCTAGATGTAGTTTGAGTACTCGAATTGTTATATTGACCTCGAAGGTACATTTTATGTGGGCAACCTGAGGATGCAGTTCAAATAATATGGAAATTCGCCAACATACTTTTCTTTGTGCTGCTTGACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTANTAAATGTTTACCTTATTAGTTTGTTCAATAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTGATGTNCCCCTACCAAAATAAGTCATTCAATCGACACAGTTATAGCGATTCCTTGCACATGTAAATCCATCTAGATATTACGATCTATGCTGACCTATATAGACTAAGTATCTACTAAACATCTGTATCTAGGTTCCTACTGACGTTCTACAGTATCTATAAGACAACTGCTTTATACTTAAGGTCCTTACAAACTTTTGCCTTTTGAAGGCTTTTAATAA]

[+] EMBL CD081437             [CCACGAGGCCAANAATTCGGCACGAGGGTTATGTTAAAGCCGGAGATTGGGATTGGGCATCCTGGAATAATTACCTGAGTTGGATCGCCCGCACCAATCCTCAGTGGTATGAAATATTTGTGAATTTAAGCCGAGGACTCGGCATAGATTGGGATGACATGTATAAAAAGTGGGTCAGCTCGGTGTCAGGGGATTCCAGCTGCAATAAAAACCCACCTATGTCTTATTGTGAGTTAAAATTGTTGTACTTATGGTTTCTATCTTTAAGGGAGTGACTATCATCTAGATGTAGTTTGAGTACTCGAATTGTTATATTGACCTCGAAGGTACATTTTATGTGGGCAACCTGAGGATGCAGTTCAAATAATATGGAAATTCGCCAACATACTTTTCTTTGTGCTGCTTGACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTANTAAATGTTTACCTTATTAGTTTGTTCAATAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTGATGTNCCCCTACCAAAATAAGTCATTCAATCGACACAGTTATAGCGATTCCTTGCACATGTAAATCCATCTAGATATTACGATCTATGCTGACCTATATAGACTAAGTATCTACTAAACATCTGTATCTAGGTTCCTACTGACGTTCTACAGTATCTATAAGACAACTGCTTTATACTTAAGGTCCTTACAAACTTTTGCCTTTTGAAGGCTTTTAATAA]




>consensus_733#0
CCACGAGGCCAANAATTCGGCACGAGGGTTATGTTAAAGCCGGAGATTGGGATTGGGCAT
CCTGGAATAATTACCTGAGTTGGATCGCCCGCACCAATCCTCAGTGGTATGAAATATTTG
TGAATTTAAGCCGAGGACTCGGCATAGATTGGGATGACATGTATAAAAAGTGGGTCAGCT
CGGTGTCAGGGGATTCCAGCTGCAATAAAAACCCACCTATGTCTTATTGTGAGTTAAAAT
TGTTGTACTTATGGTTTCTATCTTTAAGGGAGTGACTATCATCTAGATGTAGTTTGAGTA
CTCGAATTGTTATATTGACCTCGAAGGTACATTTTATGTGGGCAACCTGAGGATGCAGTT
CAAATAATATGGAAATTCGCCAACATACTTTTCTTTGTGCTGCTTGACGATTACCACAGG
ATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTT
ATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTG
CTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCA
GGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTANTAAATGTTTACCTTA
TTAGTTTGTTCAATAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTG
ATGTNCCCCTACCAAAATAAGTCATTCAATCGACACAGTTATAGCGATTCCTTGCACATG
TAAATCCATCTAGATATTACGATCTATGCTGACCTATATAGACTAAGTATCTACTAAACA
TCTGTATCTAGGTTCCTACTGACGTTCTACAGTATCTATAAGACAACTGCTTTATACTTA
AGGTCCTTACAAACTTTTGCCTTTTGAAGGCTTTTAATAA

consensusID : consensus_733#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 575
fasta sequence

                              [GACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTATAAAATGTTTACCTTATTAGTTTGTTCAATAAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTGATGTTCCCCTACCAAAATAAGTTCATTCAAATCGAACACAGTTTATAGCGATTTCCTTGCACCATGTAAAATCCATCTAGATATTACCGATCTAATGCTGACCCTATAATAGACTAAGTTATTCTACTAAACATCTGTTATCTCAGGTTTCCTACTGACAGTTTCTACAAGTATCTTATAAGACCAACTTGCTTCTCATACTTAAGTGTTCTTTACGTAAACATTTTGCCTATTTGTAATGCCATTTTAAATAAAATAA]

[-] EMBL CD075263             [GACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTATAAAATGTTTACCTTATTAGTTTGTTCAATAAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACTGATGTTCCCCTACCAAAATAAGTTCATTCAAATCGAACACAGTTTATAGCGATTTCCTTGCACCATGTAAAATCCATCTAGATATTACCGATCTAATGCTGACCCTATAATAGACTAAGTTATTCTACTAAACATCTGTTATCTCAGGTTTCCTACTGACAGTTTCTACAAGTATCTTATAAGACCAACTTGCTTCTCATACTTAAGTGTTCTTTACGTAAACATTTTGCCTATTTGTAATGCCATTTTAAATAAAATAA]




>consensus_733#1
GACGATTACCACAGGATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTAT
GTATGCTTCTCCCTTATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGT
AGTCAATATTTTCTGCTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAA
AATGCCTGAGTTCCAGGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTAT
AAAATGTTTACCTTATTAGTTTGTTCAATAAAGTCAGTGTTGTCTTGAATTGGTTCTGTT
TATTTACTAAAGACTGATGTTCCCCTACCAAAATAAGTTCATTCAAATCGAACACAGTTT
ATAGCGATTTCCTTGCACCATGTAAAATCCATCTAGATATTACCGATCTAATGCTGACCC
TATAATAGACTAAGTTATTCTACTAAACATCTGTTATCTCAGGTTTCCTACTGACAGTTT
CTACAAGTATCTTATAAGACCAACTTGCTTCTCATACTTAAGTGTTCTTTACGTAAACAT
TTTGCCTATTTGTAATGCCATTTTAAATAAAATAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_733#0      CCACGAGGCCAANAATTCGGCACGAGGGTTATGTTAAAGCCGGAGATTGGGATTGGGCAT 60
consensus_733#1      ------------------------------------------------------------
                                                                                 

consensus_733#0      CCTGGAATAATTACCTGAGTTGGATCGCCCGCACCAATCCTCAGTGGTATGAAATATTTG 120
consensus_733#1      ------------------------------------------------------------
                                                                                 

consensus_733#0      TGAATTTAAGCCGAGGACTCGGCATAGATTGGGATGACATGTATAAAAAGTGGGTCAGCT 180
consensus_733#1      ------------------------------------------------------------
                                                                                 

consensus_733#0      CGGTGTCAGGGGATTCCAGCTGCAATAAAAACCCACCTATGTCTTATTGTGAGTTAAAAT 240
consensus_733#1      ------------------------------------------------------------
                                                                                 

consensus_733#0      TGTTGTACTTATGGTTTCTATCTTTAAGGGAGTGACTATCATCTAGATGTAGTTTGAGTA 300
consensus_733#1      ------------------------------------------------------------
                                                                                 

consensus_733#0      CTCGAATTGTTATATTGACCTCGAAGGTACATTTTATGTGGGCAACCTGAGGATGCAGTT 360
consensus_733#1      ------------------------------------------------------------
                                                                                 

consensus_733#0      CAAATAATATGGAAATTCGCCAACATACTTTTCTTTGTGCTGCTTGACGATTACCACAGG 420
consensus_733#1      ---------------------------------------------GACGATTACCACAGG 15
                                                                  ***************

consensus_733#0      ATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTT 480
consensus_733#1      ATACTGTTTCAAGAAACAGGTTTTAGCATACGAAATACACGTTATGTATGCTTCTCCCTT 75
                     ************************************************************

consensus_733#0      ATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTG 540
consensus_733#1      ATGAAGGTATCCAAATGTCATTAGAATCAGCTGCAAATGATCAGTAGTCAATATTTTCTG 135
                     ************************************************************

consensus_733#0      CTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCA 600
consensus_733#1      CTGTTGTTGAGCTGGGTTTTCTAAAAGTAAATATTCAGTGTCCAAAATGCCTGAGTTCCA 195
                     ************************************************************

consensus_733#0      GGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTANTAAATGTTTACCTTA 660
consensus_733#1      GGTCTTTGGTTGAATTACCATACTCAAATGTTTGAGCTCCTTTATAAAATGTTTACCTTA 255
                     ********************************************  **************

consensus_733#0      TTAGTTTGTTCAATAA-GTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACT 719
consensus_733#1      TTAGTTTGTTCAATAAAGTCAGTGTTGTCTTGAATTGGTTCTGTTTATTTACTAAAGACT 315
                     **************** *******************************************

consensus_733#0      GATGTNCCCCTACCAAAATAAGT-CATTCAA-TCGA-CACAGTT-ATAGCGATT-CCTTG 774
consensus_733#1      GATGTTCCCCTACCAAAATAAGTTCATTCAAATCGAACACAGTTTATAGCGATTTCCTTG 375
                     ***** ***************** ******* **** ******* ********* *****

consensus_733#0      CAC-ATGTAAA-TCCATCTAGATATTAC-GATCTA-TGCTGACC-TATA-TAGACTAAGT 828
consensus_733#1      CACCATGTAAAATCCATCTAGATATTACCGATCTAATGCTGACCCTATAATAGACTAAGT 435
                     *** ******* **************** ****** ******** **** **********

consensus_733#0      A--TCTACTAAACATCTGT-ATCTAGG--TTCCTACTGACG--TTCTACA-GTATCT-AT 879
consensus_733#1      TATTCTACTAAACATCTGTTATCTCAGGTTTCCTACTGACAGTTTCTACAAGTATCTTAT 495
                        **************** ****  *  ***********   ******* ****** **

consensus_733#0      AAGACAA--CTGCTTT--ATACTTAAGG--TCCTTAC--AAAC-TTTTGCCT-TTTGAAG 929
consensus_733#1      AAGACCAACTTGCTTCTCATACTTAAGTGTTCTTTACGTAAACATTTTGCCTATTTGTAA 555
                     ***** *   *****   *********   ** ****  **** ******** **** * 

consensus_733#0      ----GCTTTTAATAA----- 940
consensus_733#1      TGCCATTTTAAATAAAATAA 575
                           *** *****