cluster # 734

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Schistosoma mansoni
cluster # 734 cluster # 734 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_734#0 length = 310 sequences # 1

consensus_734#1 length = 300 sequences # 1

consensusID : consensus_734#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence

                              [CGAAATAATAATAATAATAATAATAGAAGTGAAGAAAAAGGCCTCNNTGTGCAACAACAACAACAACAGTGGGTAACTAACAATAACCGGCATTTGTTAGAGAAGCATATAAAAAAAACAGAATACACAGTCTCGATGACAACTGAAAACATGAGAGAAGGAATAAAAACTGGGAAAAAATGTCACCTTACGTATATATATATATGGATATATACGGAAATCACATGGCAGTCAGTTAATTTTTGAGACAAATATGGATATATATATATATATATATGCTGAATTGTTTCATCTTGTTTATGGTTAACCG]

[+] EMBL CD202633             [CGAAATAATAATAATAATAATAATAGAAGTGAAGAAAAAGGCCTCNNTGTGCAACAACAACAACAACAGTGGGTAACTAACAATAACCGGCATTTGTTAGAGAAGCATATAAAAAAAACAGAATACACAGTCTCGATGACAACTGAAAACATGAGAGAAGGAATAAAAACTGGGAAAAAATGTCACCTTACGTATATATATATATGGATATATACGGAAATCACATGGCAGTCAGTTAATTTTTGAGACAAATATGGATATATATATATATATATATGCTGAATTGTTTCATCTTGTTTATGGTTAACCG]




>consensus_734#0
CGAAATAATAATAATAATAATAATAGAAGTGAAGAAAAAGGCCTCNNTGTGCAACAACAA
CAACAACAGTGGGTAACTAACAATAACCGGCATTTGTTAGAGAAGCATATAAAAAAAACA
GAATACACAGTCTCGATGACAACTGAAAACATGAGAGAAGGAATAAAAACTGGGAAAAAA
TGTCACCTTACGTATATATATATATGGATATATACGGAAATCACATGGCAGTCAGTTAAT
TTTTGAGACAAATATGGATATATATATATATATATATGCTGAATTGTTTCATCTTGTTTA
TGGTTAACCG

consensusID : consensus_734#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [AAAATAAAAATAAAGACAATTCCAAAATACCACCAGTAATTTGAAAAGAGAGTAAAAGAAAACCAAAAAAGAAGTAGAATCTCAGGTAACTACTAGTACTCACTTCTGAAATAGATTGTTACGTCATAGGCAAGTAATAAAGTCGAAATAATAATAATAATAATAGAAGTGAAGAAAAAGGCATCAATGTGCAACAACAACAACAACAGTGGGTAACTAACAATAACCGGCATTTGTTAGAGAAGCATATAAAAAAACCAAATTCCCCGGCTTCAAGAACACTGGAAACCTGAAAAAAGG]

[+] EMBL CD185236             [AAAATAAAAATAAAGACAATTCCAAAATACCACCAGTAATTTGAAAAGAGAGTAAAAGAAAACCAAAAAAGAAGTAGAATCTCAGGTAACTACTAGTACTCACTTCTGAAATAGATTGTTACGTCATAGGCAAGTAATAAAGTCGAAATAATAATAATAATAATAGAAGTGAAGAAAAAGGCATCAATGTGCAACAACAACAACAACAGTGGGTAACTAACAATAACCGGCATTTGTTAGAGAAGCATATAAAAAAACCAAATTCCCCGGCTTCAAGAACACTGGAAACCTGAAAAAAGG]




>consensus_734#1
AAAATAAAAATAAAGACAATTCCAAAATACCACCAGTAATTTGAAAAGAGAGTAAAAGAA
AACCAAAAAAGAAGTAGAATCTCAGGTAACTACTAGTACTCACTTCTGAAATAGATTGTT
ACGTCATAGGCAAGTAATAAAGTCGAAATAATAATAATAATAATAGAAGTGAAGAAAAAG
GCATCAATGTGCAACAACAACAACAACAGTGGGTAACTAACAATAACCGGCATTTGTTAG
AGAAGCATATAAAAAAACCAAATTCCCCGGCTTCAAGAACACTGGAAACCTGAAAAAAGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_734#0      CGAAATAATAATAATAATAATAATAGAAGTGAAGAAAAAGGCCTCNNTGTGCAACAACAA 60
consensus_734#1      -AAAATAAAAATAAAGACAATTCCAAAA--TACCACCAGTAATTTGAAAAGAGAGTAAAA 57
                       ****** *****  * ***   * **   *  *  *     *      *  *  * **

consensus_734#0      CAACAACAGTGGGTAACTAACAATAACCGGCATTTGTTAG-AGAAGCATATAAAAAAAAC 119
consensus_734#1      GAAAACCAAAAAAGAAGTAG-AATCTCAGGTAACTACTAGTACTCACTTCTGAAATAGAT 116
                      ** * **      ** **  ***  * ** *  *  *** *    * * * *** * * 

consensus_734#0      AG--AATACACAGTCTCG-ATGACAACTGAAAACATGAGAGAAGGAATAAAAACTGGGAA 176
consensus_734#1      TGTTACGTCATAGGCAAGTAATAAAGTCGAAATAATAATAATAATAATAGAAGT--GAAG 174
                      *  *   ** ** *  * *  * *   ****  ** * *  *  **** **    * * 

consensus_734#0      AAAATGTCACCTTACGTATATATATATATGGATATATACGGAAATCACATGGCAGTCAGT 236
consensus_734#1      AAAAAGGCATCA---ATGTGCAACAACAACAACAACAGTGGGTAACTAACAATAACCGGC 231
                     **** * ** *     * *  *   * *   * *     **  * *  *    *  * * 

consensus_734#0      TAATTTTTGAGACAAATATGGATATAT-ATATATATATATATGCTGAATTGTTTCATCTT 295
consensus_734#1      ATTTGTTAGAGAAGCATATAAAAAAACCAAATTCCCCGGCTTCAAGAACACTGGAAACCT 291
                        * ** ****   ****  * * *  * **         *   ***   *   * * *

consensus_734#0      GTTTATGGTTAACCG 310
consensus_734#1      GAAAAAAGG------ 300
                     *   *  *