cluster # 7345

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Schistosoma mansoni
cluster # 7345 cluster # 7345 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7345#0 length = 412 sequences # 2
consensus_7345#1 length = 303 sequences # 1

consensus_7345#2 length = 300 sequences # 1
consensus_7345#3 length = 276 sequences # 1

consensusID : consensus_7345#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 412
fasta sequence

                              [ATGTTTTCCTCGATAGTCCATAGCAAGTACCTTTTGACCCACACTAAACAATCGTTTTTGTGCCCCATGATGACTATTGTACTGTTTCTCCATCATCACGTTTCGTTGCGGCTTAAGAGCTAGAGTCGGACGAATGCTGTCAAAATGTGTACGTATTGTTCTGCCAAGTAACGCTTACGCTGGGGAGACTCCATTTGTTGTCTGAGGGCTCGGTGTCGAACGGTAGATAACAAGACCTCTCTAAGATCTCTTCGGTGTCCCCTCCCTCTTGATTTTTTTAGAGCATTTTTGAACGTACCAAAAAACGTTCAACGTGACATTCGATTGCGGATGGAATGGAGGTGTTCGGATGTGCTGATTCCGTTCTGCTGACAAATTCTGAAGTCTTTCGACTCCACGACGAACACTGGAG]

[+] EMBL CD086535             [ATGTTTTCCTCGATAGTCCATAGCAAGTACCTTTTGACCCACACTAAACAATCGTTTTTGTGCCCCATGATGACTATTGTACTGTTTCTCCATCATCACGTTTCGTTGCGGCTTAAGAGCTAGAGTCGGACGAATGCTGTCAAAATGTGTACGTATTGTTCTGCCAAGTAACGCTTACGCTGGGGAGACTCCATTT                                                                                                                                                                                                                        ]
[+] EMBL AI977794             [                                                                                                                 TAAGAGCTGGAGTCGGACGAATGCTCTCAAAATGTGTACGTATTTTTCTGCCAAGTAACGCTTCCGCTGGGGAGACTCCATTTGTTGTCTGAGGGCTCGGTGTCGAACGGTAGATAACAAGACCTCTCTAAGATCTCTTCGGTGTCCCCTCCCTCTTGATTTTTTTAGAGCATTTTTGAACGTACCAAAAAACGTTCAACGTGACATTCGATTGCGGATGGAATGGAGGTGTTCGGATGTGCTGATTCCGTTCTGCTGACAAATTCTGAAGTCTTTCGACTCCACGACGAACACTGGAG]




>consensus_7345#0
ATGTTTTCCTCGATAGTCCATAGCAAGTACCTTTTGACCCACACTAAACAATCGTTTTTG
TGCCCCATGATGACTATTGTACTGTTTCTCCATCATCACGTTTCGTTGCGGCTTAAGAGC
TAGAGTCGGACGAATGCTGTCAAAATGTGTACGTATTGTTCTGCCAAGTAACGCTTACGC
TGGGGAGACTCCATTTGTTGTCTGAGGGCTCGGTGTCGAACGGTAGATAACAAGACCTCT
CTAAGATCTCTTCGGTGTCCCCTCCCTCTTGATTTTTTTAGAGCATTTTTGAACGTACCA
AAAAACGTTCAACGTGACATTCGATTGCGGATGGAATGGAGGTGTTCGGATGTGCTGATT
CCGTTCTGCTGACAAATTCTGAAGTCTTTCGACTCCACGACGAACACTGGAG

consensusID : consensus_7345#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 303
fasta sequence

                              [AAACAGTACAATAGTCATCATGGGTCAAAAGGTACTTGCTATGGACTATCGACGAAAACATCCTACATGGATAGCTGGTCGGATCGTGCAAAAGAAAGGAAATGTGGTTTACTAGGTGTCCGTTGGATCACAAATCTGGGTGCGTCTATGCTAACCAACTGAAATTCACCCTGATCTCCAACCACTAAACTCCCCATACATCACCTTTTGATGTTCTGCTACACACCTCCTGAGTTGCAAACACCCTCGAACACACATGACACTCCTACGTGCCAACTAACGATGATACAACGCCCCTTATTA]

[+] EMBL CD089548             [AAACAGTACAATAGTCATCATGGGTCAAAAGGTACTTGCTATGGACTATCGACGAAAACATCCTACATGGATAGCTGGTCGGATCGTGCAAAAGAAAGGAAATGTGGTTTACTAGGTGTCCGTTGGATCACAAATCTGGGTGCGTCTATGCTAACCAACTGAAATTCACCCTGATCTCCAACCACTAAACTCCCCATACATCACCTTTTGATGTTCTGCTACACACCTCCTGAGTTGCAAACACCCTCGAACACACATGACACTCCTACGTGCCAACTAACGATGATACAACGCCCCTTATTA]




>consensus_7345#1
AAACAGTACAATAGTCATCATGGGTCAAAAGGTACTTGCTATGGACTATCGACGAAAACA
TCCTACATGGATAGCTGGTCGGATCGTGCAAAAGAAAGGAAATGTGGTTTACTAGGTGTC
CGTTGGATCACAAATCTGGGTGCGTCTATGCTAACCAACTGAAATTCACCCTGATCTCCA
ACCACTAAACTCCCCATACATCACCTTTTGATGTTCTGCTACACACCTCCTGAGTTGCAA
ACACCCTCGAACACACATGACACTCCTACGTGCCAACTAACGATGATACAACGCCCCTTA
TTA

consensusID : consensus_7345#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence

                              [TTCGAACGGTAGATAAACAAGAACCTCTCTAAGATCTCTTCGGTGTCCCCCTCCCCTCTTGATTTTTTTAGAGCATTTTTGAACGTACCAACAAAACGTTCTACCTGACCATTCGATTGCGGATGGAATGGAGGTGTTCGGATGTGCCTGATTCCGTTCTGCTGACAAAATGCTGAAAAGTCTTTTCTGACTTCATCTGACGACACTGGAGTGTTTCGAATTGCCGCTGCTGCTACACTCCGTATGTCTGGAACCTTTTCACCTGTCTTTTTTGCATATGAGGTGGTGTCTAATGATGGA]

[+] EMBL BG931733             [TTCGAACGGTAGATAAACAAGAACCTCTCTAAGATCTCTTCGGTGTCCCCCTCCCCTCTTGATTTTTTTAGAGCATTTTTGAACGTACCAACAAAACGTTCTACCTGACCATTCGATTGCGGATGGAATGGAGGTGTTCGGATGTGCCTGATTCCGTTCTGCTGACAAAATGCTGAAAAGTCTTTTCTGACTTCATCTGACGACACTGGAGTGTTTCGAATTGCCGCTGCTGCTACACTCCGTATGTCTGGAACCTTTTCACCTGTCTTTTTTGCATATGAGGTGGTGTCTAATGATGGA]




>consensus_7345#2
TTCGAACGGTAGATAAACAAGAACCTCTCTAAGATCTCTTCGGTGTCCCCCTCCCCTCTT
GATTTTTTTAGAGCATTTTTGAACGTACCAACAAAACGTTCTACCTGACCATTCGATTGC
GGATGGAATGGAGGTGTTCGGATGTGCCTGATTCCGTTCTGCTGACAAAATGCTGAAAAG
TCTTTTCTGACTTCATCTGACGACACTGGAGTGTTTCGAATTGCCGCTGCTGCTACACTC
CGTATGTCTGGAACCTTTTCACCTGTCTTTTTTGCATATGAGGTGGTGTCTAATGATGGA

consensusID : consensus_7345#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [TAACGAGCTGGAGTCAGGACGAATGCTCTCAAAATGTGTACGTATTTTTCTGCCAAGTAACGCTTCCGCTGGGGAGACCCATTTGTTGTCTGAGGGCTCGGTGTCGAACGGTAGATAAACAAGAACCTCTCTAAGATCTCTTCGGTGTCCCCCCCCCCTCTTGATTTTTTTAGAGCATTTTTGAAGCGTACCAAGAAACGTTCTAACGTGACAGTCGATTGCGGATGAAAGGAGGTGCTCCGATGCCCCTGACTCCGTCTGCCGAAAATTCGGAGT]

[+] EMBL AW018277             [TAACGAGCTGGAGTCAGGACGAATGCTCTCAAAATGTGTACGTATTTTTCTGCCAAGTAACGCTTCCGCTGGGGAGACCCATTTGTTGTCTGAGGGCTCGGTGTCGAACGGTAGATAAACAAGAACCTCTCTAAGATCTCTTCGGTGTCCCCCCCCCCTCTTGATTTTTTTAGAGCATTTTTGAAGCGTACCAAGAAACGTTCTAACGTGACAGTCGATTGCGGATGAAAGGAGGTGCTCCGATGCCCCTGACTCCGTCTGCCGAAAATTCGGAGT]




>consensus_7345#3
TAACGAGCTGGAGTCAGGACGAATGCTCTCAAAATGTGTACGTATTTTTCTGCCAAGTAA
CGCTTCCGCTGGGGAGACCCATTTGTTGTCTGAGGGCTCGGTGTCGAACGGTAGATAAAC
AAGAACCTCTCTAAGATCTCTTCGGTGTCCCCCCCCCCTCTTGATTTTTTTAGAGCATTT
TTGAAGCGTACCAAGAAACGTTCTAACGTGACAGTCGATTGCGGATGAAAGGAGGTGCTC
CGATGCCCCTGACTCCGTCTGCCGAAAATTCGGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7345#0      ATGTTTTCCTCGATAGTCCATAGCAAGTACCTTTTGACCCACACTAAACAATCGTTTTTG 60
consensus_7345#3      ------------------------------------------------------------
consensus_7345#2      ------------------------------------------------------------
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      TGCCCCATGATGACTATTGTACTGTTTCTCCATCATCACGTTTCGTTGCGGCTTAAGAGC 120
consensus_7345#3      ----------------------------------------------------TAACGAGC 8
consensus_7345#2      ------------------------------------------------------------
consensus_7345#1      ------------------------------------------------------------
                                                                                  

consensus_7345#0      TAGAGTC-GGACGAATGCTGTCAAAATGTGTACGTATTGTTCTGCCAAGTAACGCTTACG 179
consensus_7345#3      TGGAGTCAGGACGAATGCTCTCAAAATGTGTACGTATTTTTCTGCCAAGTAACGCTTCCG 68
consensus_7345#2      ------------------------------------------------------------
consensus_7345#1      ---AAACAGTACAATAGTCATCATGGGTCAAAAGGTACTTGCTATGGACTATCGAC---- 53
                                                                                  

consensus_7345#0      CTGGGGAGACTCCATTTGTTGTCTGAGGGCTCGGTGTCGAACGGTAGATAA-CAAGA-CC 237
consensus_7345#3      CTGGGGAGAC-CCATTTGTTGTCTGAGGGCTCGGTGTCGAACGGTAGATAAACAAGAACC 127
consensus_7345#2      -----------------------------------TTCGAACGGTAGATAAACAAGAACC 25
consensus_7345#1      ----GAAAACATCCTACATGGATAGCTGGTCGG--ATCGTGCAAAAGAAAGGAAATGTGG 107
                                                          ***  *   *** *   **     

consensus_7345#0      TCTCTAAGATCTCTTCGGTGTCCCCTCCC--TCTTGATTTTTTTAGAGCATTTTTGAA-C 294
consensus_7345#3      TCTCTAAGATCTCTTCGGTGTCCCCCCCCCCTCTTGATTTTTTTAGAGCATTTTTGAAGC 187
consensus_7345#2      TCTCTAAGATCTCTTCGGTGTCCCCCTCCCCTCTTGATTTTTTTAGAGCATTTTTGAA-C 84
consensus_7345#1      TTTACTAGGTGTCCGTTGGATCACAAATCTGGGTGCGTCTATGCTAACCAAC--TGAAAT 165
                      * *   ** * **    *  ** *    *    *   * * *    * **    ****  

consensus_7345#0      GTACCAA-AAAACGTTC-AACGTGACATTCGATTGCGGATGGAATGGAGGTGTTCGGATG 352
consensus_7345#3      GTACCAA-GAAACGTTCTAACGTGACAGTCGATTGCGGATGAAA-GGAGGTGCTCCGATG 245
consensus_7345#2      GTACCAACAAAACGTTCTACCTGACCATTCGATTGCGGATGGAATGGAGGTGTTCGGATG 144
consensus_7345#1      TCACCCT---GATCTCCAACCACTAAACTCC-CCATACATCACCTTTTGATGTTCTGCTA 221
                        ***      *  * * * *     * **        **        * ** ** * * 

consensus_7345#0      TGC-TGATTCCGTTCTGCTGAC------AAATTCTGAAG----TCTTTCGACTCCA-CGA 400
consensus_7345#3      CCCCTGACTCCGT-CTGCCGA-------AAATTC-GGAG----T---------------- 276
consensus_7345#2      TGCCTGATTCCGTTCTGCTGACA-----AAATGCTGAAAAGTCTTTTCTGACTTCATCTG 199
consensus_7345#1      CACACC-TCCTGAGTTGCAAACACCCTCGAACACACATGACACTCCTACG-TGCCAACTA 279
                        *      * *   ***  *        **  *         *                

consensus_7345#0      CGAACACTGGAG------------------------------------------------ 412
consensus_7345#3      ------------------------------------------------------------
consensus_7345#2      ACGACACTGGAGTGTTTCGAATTGCCGCTGCTGCTACACTCCGTATGTCTGGAACCTTTT 259
consensus_7345#1      ACGATGATACAACGCCCCTTATTA------------------------------------ 303
                                                                                  

consensus_7345#0      -----------------------------------------
consensus_7345#3      -----------------------------------------
consensus_7345#2      CACCTGTCTTTTTTGCATATGAGGTGGTGTCTAATGATGGA 300
consensus_7345#1      -----------------------------------------