cluster # 7348

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Schistosoma mansoni
cluster # 7348 cluster # 7348 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7348#0 length = 700 sequences # 1
consensus_7348#1 length = 548 sequences # 1

consensus_7348#2 length = 471 sequences # 2
consensus_7348#3 length = 419 sequences # 1

consensusID : consensus_7348#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [GGACATAGTTTTAAAGCGAATGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGGTACTGGAAGTCCATAAAGGTCATCGGTTTTAGATCCTAGTACTCAGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGACGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATCTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGGTANGCATTCGTCTGTGCATTGTGGGACACAGCTCTGAGTTACTTTTCTAGAATCGAATAGTA]

[+] EMBL CD127103             [GGACATAGTTTTAAAGCGAATGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGGTACTGGAAGTCCATAAAGGTCATCGGTTTTAGATCCTAGTACTCAGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGACGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATCTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGGTANGCATTCGTCTGTGCATTGTGGGACACAGCTCTGAGTTACTTTTCTAGAATCGAATAGTA]




>consensus_7348#0
GGACATAGTTTTAAAGCGAATGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGT
CTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGGT
ACTGGAAGTCCATAAAGGTCATCGGTTTTAGATCCTAGTACTCAGGTTGATGTCATCGAT
GTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCA
CCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCA
AAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCG
GAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGACGAGACTGCACCAACTGTC
CAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATCTCGGT
GGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCT
ACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACA
TTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGGTANGCATTCGTCTGTGCATTGT
GGGACACAGCTCTGAGTTACTTTTCTAGAATCGAATAGTA

consensusID : consensus_7348#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 548
fasta sequence

                              [TTGATAAATTAATGTCGGCGCTCTTCCACTTTGTTTAAGATTCCTAGATTCACCTTCTCAACCTTTTAATGGCTCTTTCTGGGTCGAAGGAGTTTGTCGATATGCTTCTAGCTCGTGAATTTACAAGTGCTGATGATCAGGTACTTATTATGAATGGTTGTGATGTTAGTGGACATAGTTTTAAAGCGAACGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGATCCTAGTACTCAGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGGCGAGACTGCA]

[+] EMBL AI977547             [TTGATAAATTAATGTCGGCGCTCTTCCACTTTGTTTAAGATTCCTAGATTCACCTTCTCAACCTTTTAATGGCTCTTTCTGGGTCGAAGGAGTTTGTCGATATGCTTCTAGCTCGTGAATTTACAAGTGCTGATGATCAGGTACTTATTATGAATGGTTGTGATGTTAGTGGACATAGTTTTAAAGCGAACGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGATCCTAGTACTCAGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGGCGAGACTGCA]




>consensus_7348#1
TTGATAAATTAATGTCGGCGCTCTTCCACTTTGTTTAAGATTCCTAGATTCACCTTCTCA
ACCTTTTAATGGCTCTTTCTGGGTCGAAGGAGTTTGTCGATATGCTTCTAGCTCGTGAAT
TTACAAGTGCTGATGATCAGGTACTTATTATGAATGGTTGTGATGTTAGTGGACATAGTT
TTAAAGCGAACGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGTCTAAGACTTA
AGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGATCCTAGTACTC
AGGTTGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGG
TCGATCACTTTTCCTCACCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTT
CAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTG
TCACAACCTGTTGGCCGGAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGGCG
AGACTGCA

consensusID : consensus_7348#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 471
fasta sequence

                              [AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATTTCGGGGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGCTCTGAGTTACTTTTCTAGAATCGAATAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGCAAAAC]

[+] EMBL CD096811             [AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATTTCGGGGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGCTCTGAGTTACTTTTCTAGAATCGAATAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGCAAAAC]
[+] EMBL CD096812             [AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGTATGAAAGGCAGCTATACTGACTTCCATATAGATTTCGGTGG                                                                                                                                                                                                                                                                                                                                                                                  ]




>consensus_7348#2
AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTCCAAAAATACTGTCTTTTAAGT
ATGAAAGGCAGTTATACTGACTTCCATATAGATTTCGGGGGATCGTCTGTTTGGTACCAT
GTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCT
TATTGGCGATGGTGTATGAGCAGCAATCATAGGGCGACATTCTTCCCAGACTTTGTGGAT
AGTCTTCGGGAGCAAGCTCTGAGTTACTTTTCTAGAATCGAATAGTAACGTAAATAGACC
TACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGAT
CCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATT
GCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGCAAAAC

consensusID : consensus_7348#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 419
fasta sequence

                              [CCATATAGATTTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCGTAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGAATCGAATAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGTAAAACTCCAATTAAATTTCTTTTCCCCAATTTTGAGAAAGTTCATTGGTTTTATA]

[+] EMBL CD132770             [CCATATAGATTTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTTTTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAATCGTAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGAATCGAATAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGGGAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAAATGTAAAACTCCAATTAAATTTCTTTTCCCCAATTTTGAGAAAGTTCATTGGTTTTATA]




>consensus_7348#3
CCATATAGATTTCGGTGGATCGTCTGTTTGGTACCATGTCATGTGGGGCGAAAAGGTGTT
TTACTTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAG
CAATCGTAGGGCGACATTCTTCCCAGACTTTGTGGATAGTCTTCGGGAGCAAGAATCGAA
TAGTAACGTAAATAGACCTACAGTTTACTGCCTTCGTATTTTACCGGGCCAAACAATCTT
CCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGATTGTCTAGTTTTTGGAGG
GAATTTCCTAAGTGGATTGCATGTATCTATGCAACTCAGAATTTATCGCATGGAACAAAA
ATGTAAAACTCCAATTAAATTTCTTTTCCCCAATTTTGAGAAAGTTCATTGGTTTTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7348#2      ------------------------------------------------------------
consensus_7348#3      ------------------------------------------------------------
consensus_7348#0      GGACATAGTTTTAAAGCGAATGGTTTCTCAAAACCCGTTTTGGTACGATCAAAAGATGGT 60
consensus_7348#1      ------------------------------------------------------------
                                                                                  

consensus_7348#2      ------------------------------------------------------------
consensus_7348#3      ------------------------------------------------------------
consensus_7348#0      CTAAGACTTAAGGTCCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGGT 120
consensus_7348#1      ------------------------------------------------------------
                                                                                  

consensus_7348#2      ------------------------------------------------------------
consensus_7348#3      ------------------------------------------------------------
consensus_7348#0      ACTGGAAGTCCATAAAGGTCATCGGTTTTAGATCCTAGTACTCAGGTTGATGTCATCGAT 180
consensus_7348#1      ------------------------------------------------------------
                                                                                  

consensus_7348#2      ------------------------------------------------------------
consensus_7348#3      ------------------------------------------------------------
consensus_7348#0      GTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACTGGTCGATCACTTTTCCTCA 240
consensus_7348#1      ------------------------------------------------------------
                                                                                  

consensus_7348#2      ------------------------------------------------------------
consensus_7348#3      ------------------------------------------------------------
consensus_7348#0      CCTCGTCGACAGGTGCTGTTAAATATGCTGAGTCTGGAGTTTTCAAGAACCAGCCTTGCA 300
consensus_7348#1      ------------------------------------------------------------
                                                                                  

consensus_7348#2      ------------------------------------------------------------
consensus_7348#3      ------------------------------------------------------------
consensus_7348#0      AAGTTTGTACATCCTCCGCATGTCGTTTCGGAACTTAGTCTTGTCACAACCTGTTGGCCG 360
consensus_7348#1      ------------------------------------------------------TTGATA 6
                                                                                  

consensus_7348#2      ---------------------AAAGATATCGAATTTGTTGGCGAGACTGCACCAACTGTC 39
consensus_7348#3      ------------------------------------------------------------
consensus_7348#0      GAAGATGACCCTAACGACCTTAAAGATATCGAATTTGTTGACGAGACTGCACCAACTGTC 420
consensus_7348#1      AATTAATGTCGGCGCTCTTCCACTTTGTTTAAGATTCCTAGATTCACCTTCTCAACCTTT 66
                                                                                  

consensus_7348#2      CAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATTT---- 95
consensus_7348#3      --------------------------------------------CCATATAGATTT---- 12
consensus_7348#0      CAAAAATACTGTCTTTTAAGTATGAAAGGCAGTTATACTGACTTCCATATAGATCT---- 476
consensus_7348#1      TAATGGCTCTTTCTGGGTCGAAGGAGTTTGTCGATATGCTTCTAGCTCGTGAATTTACAA 126
                                                                   *   *  ** *    

consensus_7348#2      ---CGGGGGATCGTCTGTTTGGTACCA-----TGTCATGTGGGGCGAAAAGGTGTTTTAC 147
consensus_7348#3      ---CGGTGGATCGTCTGTTTGGTACCA-----TGTCATGTGGGGCGAAAAGGTGTTTTAC 64
consensus_7348#0      ---CGGTGGATCGTCTGTTTGGTACCA-----TGTCATGTGGGGCGAAAAGGTGTTTTAC 528
consensus_7348#1      GTGCTGATGATCAGGTACTTATTATGAATGGTTGTGATGTTAGTGGACATAGTTTTAAAG 186
                         * *  ****   *  **  **  *     *** ****  *  ** *  ** **  * 

consensus_7348#2      TTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAAT 207
consensus_7348#3      TTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAAT 124
consensus_7348#0      TTGATGCCGCCTACACCCGAGTTTGTTTCTGCTTATTGGCGATGGTGTATGAGCAGCAAT 588
consensus_7348#1      CGAACGGTTTCTCAAAACCCGTTTTGGTACGATCA--AAAGATGGTCTAAGACTTAAGGT 244
                         * *    **  *  *  ****   *  * * *     ****** ** **       *

consensus_7348#2      CATAG-GGCGACATTCTTCC-CAGACTTTGTGGATAGTCTTCGGGAGCAAGCTCTGAGTT 265
consensus_7348#3      CGTAG-GGCGACATTCTTCC-CAGACTTTGTGGATAGTCTTCGGGAGCAAG--------- 173
consensus_7348#0      CATAG-GGCGACATTCTTCC-CAGACTTTGTGGATAGTCTTCGGGAGCAAGGT------- 639
consensus_7348#1      CCCGCTGGACTCATTCTCTCACACAGATTTAACCAGGTTTATAGATCCTAGTACTCAGGT 304
                      *     **   ******  * ** *  **       ** *   *   * **         

consensus_7348#2      ACTTTTCTAGAATCGAATAGTAAC-GTAAATAGACCTACAGTTTACTGCCTTCGTATTTT 324
consensus_7348#3      ----------AATCGAATAGTAAC-GTAAATAGACCTACAGTTTACTGCCTTCGTATTTT 222
consensus_7348#0      ----------ANGCATTCGTCTGT-GCATTGTGGGACACAGCT--CTGAGTTACTTTTCT 686
consensus_7348#1      ----TGATGTCATCGATGTTCGTCAGCAAGTCGAGATACAAATGACACTCCAAGAACT-- 358
                                   *           * *    *    ***  *  *           *  

consensus_7348#2      ACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGA 384
consensus_7348#3      ACCGGGCCAAACAATCTTCCTACCATCTGGTTGGATCCACGCTGTTTACACGCCTTCTGA 282
consensus_7348#0      A--GAATCGAATAGTA-------------------------------------------- 700
consensus_7348#1      ----GGTCGATCACTTTTCCT--CACCTCGTCG-ACAGGTGCTGTTAA---ATATGCTGA 408
                             * *  * *                                             

consensus_7348#2      TTGTCTAGTTTTTG-GAGGGAATTTCCTAAGTGGATTGCATGTATC-TATG-CAACTCAG 441
consensus_7348#3      TTGTCTAGTTTTTG-GAGGGAATTTCCTAAGTGGATTGCATGTATC-TATG-CAACTCAG 339
consensus_7348#0      ------------------------------------------------------------
consensus_7348#1      GTCTGGAGTTTTCAAGAACCAGCCTTGCAAAGTTTGTACATCCTCCGCATGTCGTTTCGG 468
                                                                                  

consensus_7348#2      AATTTATCGCATGGAACAAAAATGCAAAAC------------------------------ 471
consensus_7348#3      AATTTATCGCATGGAACAAAAATGTAAAACTCCAATTAAATTTCTTTTCCCCAATTTTGA 399
consensus_7348#0      ------------------------------------------------------------
consensus_7348#1      AACTTAGT-CTTGTCACAACC-TGTTGGCCGGAAGATGACCCTAACGACCTTAAAGAT-A 525
                                                                                  

consensus_7348#2      -----------------------
consensus_7348#3      GAAAGTTCATTGGTTTTATA--- 419
consensus_7348#0      -----------------------
consensus_7348#1      TCGAATTTGTTGGCGAGACTGCA 548