cluster # 7352

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Schistosoma mansoni
cluster # 7352 cluster # 7352 Sequences # 5 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7352#0 length = 420 sequences # 1
consensus_7352#1 length = 288 sequences # 1

consensus_7352#2 length = 256 sequences # 1
consensus_7352#3 length = 244 sequences # 1
consensus_7352#4 length = 148 sequences # 1

consensusID : consensus_7352#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 420
fasta sequence

                              [GAGCTCACCTAGTTCCCAGGAATGGGATACTCTTTTCTGGGCCTCGGAAACCCCGCTGGTTTGGAGGAAAACGTCTAACCTGACGCCGCTCTTCATACACTGGAAAAGCAACTTCGGATGAATTTTGCAAATTACTCTTTGCCCTAGCTTTTTTGAGGTCCTTGAACCAAGTTAGCTCTACAGGGTAACCAAACATTGTTTTGCCGTTGTGTCTGAAAATTAGATGAATGTAAAGCTTACCGACGAAGCATTTCGCTGGCAATCTCGTGGGACTTGAATCGTATGGCGACTGAGAATCTTTTCTTATCTTCTGAAGTAGAAAAAAACTCCACAGAGCACCTGGAATTTGTTTCATTACAGAAAAAGTCCTTCACTTTAGTTACGTCTGTCGTCCCTGGAAGCCCTCTAATAAATAGGGTG]

[+] EMBL CD128762             [GAGCTCACCTAGTTCCCAGGAATGGGATACTCTTTTCTGGGCCTCGGAAACCCCGCTGGTTTGGAGGAAAACGTCTAACCTGACGCCGCTCTTCATACACTGGAAAAGCAACTTCGGATGAATTTTGCAAATTACTCTTTGCCCTAGCTTTTTTGAGGTCCTTGAACCAAGTTAGCTCTACAGGGTAACCAAACATTGTTTTGCCGTTGTGTCTGAAAATTAGATGAATGTAAAGCTTACCGACGAAGCATTTCGCTGGCAATCTCGTGGGACTTGAATCGTATGGCGACTGAGAATCTTTTCTTATCTTCTGAAGTAGAAAAAAACTCCACAGAGCACCTGGAATTTGTTTCATTACAGAAAAAGTCCTTCACTTTAGTTACGTCTGTCGTCCCTGGAAGCCCTCTAATAAATAGGGTG]




>consensus_7352#0
GAGCTCACCTAGTTCCCAGGAATGGGATACTCTTTTCTGGGCCTCGGAAACCCCGCTGGT
TTGGAGGAAAACGTCTAACCTGACGCCGCTCTTCATACACTGGAAAAGCAACTTCGGATG
AATTTTGCAAATTACTCTTTGCCCTAGCTTTTTTGAGGTCCTTGAACCAAGTTAGCTCTA
CAGGGTAACCAAACATTGTTTTGCCGTTGTGTCTGAAAATTAGATGAATGTAAAGCTTAC
CGACGAAGCATTTCGCTGGCAATCTCGTGGGACTTGAATCGTATGGCGACTGAGAATCTT
TTCTTATCTTCTGAAGTAGAAAAAAACTCCACAGAGCACCTGGAATTTGTTTCATTACAG
AAAAAGTCCTTCACTTTAGTTACGTCTGTCGTCCCTGGAAGCCCTCTAATAAATAGGGTG

consensusID : consensus_7352#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 288
fasta sequence

                              [TGGTCCCGGCAGATTCACAGCAGATTCCACGAGCCCGCTGCTACTCGGGCAACCCAACAACCCACATGCCATTGTCTTCAACTACAGGACTCTCACCTTCTCCGGCAGGCCATTCCAAACCACTTCACCTAACAACAACACACGAGCACGATGATGGTAGTCACCGCCAATTGGGGCCCACAACACCGCACACACAACCCCTACCAGGTATCACATGCACACGGTTTAGCCTCATCCACGTTCGTTCGCCACTACTAGCAGAATCATTATTATTTTCTCCCCCTACGG]

[+] EMBL CD111061             [TGGTCCCGGCAGATTCACAGCAGATTCCACGAGCCCGCTGCTACTCGGGCAACCCAACAACCCACATGCCATTGTCTTCAACTACAGGACTCTCACCTTCTCCGGCAGGCCATTCCAAACCACTTCACCTAACAACAACACACGAGCACGATGATGGTAGTCACCGCCAATTGGGGCCCACAACACCGCACACACAACCCCTACCAGGTATCACATGCACACGGTTTAGCCTCATCCACGTTCGTTCGCCACTACTAGCAGAATCATTATTATTTTCTCCCCCTACGG]




>consensus_7352#1
TGGTCCCGGCAGATTCACAGCAGATTCCACGAGCCCGCTGCTACTCGGGCAACCCAACAA
CCCACATGCCATTGTCTTCAACTACAGGACTCTCACCTTCTCCGGCAGGCCATTCCAAAC
CACTTCACCTAACAACAACACACGAGCACGATGATGGTAGTCACCGCCAATTGGGGCCCA
CAACACCGCACACACAACCCCTACCAGGTATCACATGCACACGGTTTAGCCTCATCCACG
TTCGTTCGCCACTACTAGCAGAATCATTATTATTTTCTCCCCCTACGG

consensusID : consensus_7352#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 256
fasta sequence

                              [TACCTTCCGCTTCAAACGTCATCACGTTATCCACTCAGCTACTGAGTCCTGATAGCCACTTGCTTGTGCAATGGACGCGTTCTGGATTCCCCTGCTAGCCACTATCCATCTTTGCTTACAATGCTTGTGAAATAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCGATAAGTGACTGACCAGTTGCAGTCCTAAACATCAATGGGAAGATTCAACAAGTAGTACCAAGTGAACTTACACTAGATCAA]

[+] EMBL AI764834             [TACCTTCCGCTTCAAACGTCATCACGTTATCCACTCAGCTACTGAGTCCTGATAGCCACTTGCTTGTGCAATGGACGCGTTCTGGATTCCCCTGCTAGCCACTATCCATCTTTGCTTACAATGCTTGTGAAATAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCGATAAGTGACTGACCAGTTGCAGTCCTAAACATCAATGGGAAGATTCAACAAGTAGTACCAAGTGAACTTACACTAGATCAA]




>consensus_7352#2
TACCTTCCGCTTCAAACGTCATCACGTTATCCACTCAGCTACTGAGTCCTGATAGCCACT
TGCTTGTGCAATGGACGCGTTCTGGATTCCCCTGCTAGCCACTATCCATCTTTGCTTACA
ATGCTTGTGAAATAAGGCTATATCGAGGCAATACGCACAGTATGCACATATGCCGATAAG
TGACTGACCAGTTGCAGTCCTAAACATCAATGGGAAGATTCAACAAGTAGTACCAAGTGA
ACTTACACTAGATCAA

consensusID : consensus_7352#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 244
fasta sequence

                              [GAAGGAGCGTTTAGATCAAGTGTTAAANGCTCATTTAGGTGAANATATGGTCTGCGCAACAAACGCGAAGTGGGAGAGAAAAATTTCCTTCCCTTTTTTAACCAAGATACGTAATAGCCCGCGAGCTGAGCTGTTGACACTGGATGATAAAGACCCCAGACGACTTTTTGGAGGGTCCGCTCTGCTGAGACGCTTAGTTCGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTT]

[+] EMBL CD144566             [GAAGGAGCGTTTAGATCAAGTGTTAAANGCTCATTTAGGTGAANATATGGTCTGCGCAACAAACGCGAAGTGGGAGAGAAAAATTTCCTTCCCTTTTTTAACCAAGATACGTAATAGCCCGCGAGCTGAGCTGTTGACACTGGATGATAAAGACCCCAGACGACTTTTTGGAGGGTCCGCTCTGCTGAGACGCTTAGTTCGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTTCGTT]




>consensus_7352#3
GAAGGAGCGTTTAGATCAAGTGTTAAANGCTCATTTAGGTGAANATATGGTCTGCGCAAC
AAACGCGAAGTGGGAGAGAAAAATTTCCTTCCCTTTTTTAACCAAGATACGTAATAGCCC
GCGAGCTGAGCTGTTGACACTGGATGATAAAGACCCCAGACGACTTTTTGGAGGGTCCGC
TCTGCTGAGACGCTTAGTTCGAGTTGGTGTACTTCCCGAAGATAGGATGAAACTGGATTT
CGTT

consensusID : consensus_7352#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 148
fasta sequence

                              [CAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGGGCTCTGAATGTCAAAGGGAAGAAATTCAACCAAGCGCGGGTAAACGGCGG]

[+] EMBL CD130529             [CAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTCCACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGGGCTCTGAATGTCAAAGGGAAGAAATTCAACCAAGCGCGGGTAAACGGCGG]




>consensus_7352#4
CAGAACTGGCACGGACCAGGGGAATCCGACTGTCTAATTAAAACAAAGCATTGCGATGTC
CACTGATTGGTTTTGACGCAATGTGATTTCTGCCCAGGGCTCTGAATGTCAAAGGGAAGA
AATTCAACCAAGCGCGGGTAAACGGCGG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7352#0      GAGCTCACCTAGTTCCCAGGAATGGGATACTCTTTTCTGGGCCTCGGAAACCCCGCTGGT 60
consensus_7352#4      ------------------------------------------------------------
consensus_7352#2      ------------------------------------------------------------
consensus_7352#1      ------------------------------------------------------------
consensus_7352#3      ------------------------------------------------------------
                                                                                  

consensus_7352#0      TTGGAGGAAAACGTCTAACCTGACGCCGCTCTTCATACACTGGAAAAGCAACTTCGGATG 120
consensus_7352#4      ------------------------------------------------------------
consensus_7352#2      ------------------------------------------------------------
consensus_7352#1      -------------------------------------------------TGGTCCCGGCA 11
consensus_7352#3      ------------------------------------------------------------
                                                                                  

consensus_7352#0      AATTTTGCAAATTACTCTTTGCCCTAGCTTTTTTGAGGTCCTTGAACCAAGTTAGCTCTA 180
consensus_7352#4      ------------------------------------------------------------
consensus_7352#2      ---------------------------TACCTTCCGCTTCAAACGTCATCACGTTATCCA 33
consensus_7352#1      GATTCACAGCAGATTCCACGAGCCCGCTGCTACTCGGGCAACCCAACAACCCACATGCCA 71
consensus_7352#3      ----------------------GAAGGAGCGTTTAGATCAAGTGTTAAANGCTCATTTAG 38
                                                                                  

consensus_7352#0      CAGGGTAACCAA-ACATTGTTTTGCCGTTGTGTCTGAAAATTAGATGAATGTAAAGCTTA 239
consensus_7352#4      ----------------CAGAACTGGCACGGACCAGGGGAATCCGAC---TGTCTAATTAA 41
consensus_7352#2      CTCAGCTACTGA-GTCCTGA-TAGCCACTTGCTTGTGCAAT-GGACGCGTTCTGGATTCC 90
consensus_7352#1      TT--GTCTTCAA-CTACAGGACTCTCACCTTCTCCGGCAGGCCATTCCAAACCACTTCAC 128
consensus_7352#3      GTGAANATATGGTCTGCGCAACAAACGCGAAGTGGGAGAGAAAAATTTCCTTCCCTTTTT 98
                                               *            *                     

consensus_7352#0      CCGACGAAGCATTTCGCTGGCAATCTCGTGGGACTTGAATCGTATGGCGACTGAGAAT-C 298
consensus_7352#4      --AACAAAGCATTGCGATGTCCA-CTGATTGGTTTTGA--CGCAATGTGATTTCTGCC-C 95
consensus_7352#2      CCTGCTAGCCACTATCCATCTTTGCTTACAATGCTTGTGAAATAAGGCTATATCGAGG-C 149
consensus_7352#1      CTAACAA--CAACACACGAGCACGATGATGGTAGTCACCGCCAATTGGGGCCCACAACAC 186
consensus_7352#3      TAACCAAGATA-CGTAATAGCCCGCGAGCTGAGCTGTTGACACTGGATGATAAAGACC-C 156
                          * *   *                       *                        *

consensus_7352#0      TTTTCTTATCTTCT-GAAGTAGAAAAAAACTCCACAGAGCACCTGGAATTTGTTTCATTA 357
consensus_7352#4      AGGGCTCTGAATGT-CAAA-GGGAAGAAATTCAACCAAGCGCGGGTAAACGGCGG----- 148
consensus_7352#2      AATACGCACAGTATGCACATATGCCGATAAGTGACTGACCAGTTGCAGTCCTAAACATCA 209
consensus_7352#1      CGCACACACAACCCCTACCAGGTATCACATGCACACGGTTTAGCCTCATCCACGTTCGTT 246
consensus_7352#3      CAGACG-ACTTTTTGGAGGGTCCGCTCTGCTGAGACGCTTAGTTCGAGTTGGTGTACTTC 215
                          *           *                                           

consensus_7352#0      CAGAAAAAGTCCTTCACTTTAGTTACGTCTGTCGTCCCTGGAAGCCCTCTAATAAATAGG 417
consensus_7352#4      ------------------------------------------------------------
consensus_7352#2      ATGGGAAGATTCAACAAGTAGTACCAAGTGAACTTACACTAGATCAA------------- 256
consensus_7352#1      CGCCACTACTAGCAGAATCATTATTATTTTCTCCCCCTACGG------------------ 288
consensus_7352#3      CCGAAGATAGGATGAAACTGGATTTCGTT------------------------------- 244
                                                                                  

consensus_7352#0      GTG 420
consensus_7352#4      ---
consensus_7352#2      ---
consensus_7352#1      ---
consensus_7352#3      ---