cluster # 7355

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Schistosoma mansoni
cluster # 7355 cluster # 7355 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7355#0 length = 661 sequences # 4

consensus_7355#1 length = 343 sequences # 1

consensusID : consensus_7355#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 661
fasta sequence

                              [GAAGTTAGATTCTTGATATGTCGCGTAATACTTGAGTCCTCGAACGCTAGAACCCTTCCAAGTCGCAAAATCATAAGACAGAAGTCAAATAGAAGGAATGTTATTCCAAACAGTGTCAACTATGGTACAGAACTGTCAGGTATTTATAGTTTTTAGTAGAAACGAAATTATCATTAAAGTTATCCAATCTGCACACAGGAGGTTATTAGCGT-TCTTCAA-TAGGGAAAGCTACACTTAGTGATTCTAAAATATTTTTCCAGAAACTGATTGGATGAAATATGTTCGGCTCATTCTGGGCTTCTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTACAATACTTCCCTCAGTCATTCCTTCCTCCACAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCCCGCTCACCCGCCACTTCAATTCCCACGATCTCCGGTCCGTG]

[+] EMBL CD097752             [GAAGTTAGATTCTTGATATGTCGCGTAATACTTGAGTCCTCGAACGCTAGAACCCTTCCAAGTCGCAAAATCATAAGACAGAAGTCAAATAGAAGGAATGTTATTCCAAACAGTGTCAACTATGGTACAGAACTGTCAGGTATTTATAGTTTTTAGTAGAAACGAAATTATCATTAAAGTTATCCAATCTGCACACAGGAGGTTATTAGCGT TCTTCAA TAGGGAAAGCTACACTTAGTGATTCTAAAATATTCTTCCAGAAACTGATTGGATGGAATCTGT                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD060376             [                                                                                                                                                                                                   CAGGAGGTTATTAGCGTGTCTTCAAGTAGGGAAAGCTACACTTAGTGATTCTAAAATATTTTTCCAGAAACTGATTGGATGAAATATGTTCGGCTCATTCTGGGCTTCTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTACAATACTTCCCTCAGTCATTCCTTCC                                                                                                                                                                                                                       ]
[+] EMBL CD060379             [                                                                                                                                                                                                                                         CACTTAGTGATTCTAAAATATTTTTCCAGAAACTGA TGGATGAAATATGTTCGGCTCATTCTGGGCTTCTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTACAATACTTCCCTCAGTCATTCCTTCCTC                                                                                                                                                                                                                     ]
[-] EMBL CD169998             [                                                                                                                                                                                                                                                                                                                                                                                 GTCCGTGTACATCGCCTNCATTATTCATTGTCCTCCTTCACTCTACAACTGTACAATACTTCCCTCAGTCATTCCTTCCGACACAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCCCGCTCACCCGCCACTTCAATTCCCACGATCTCCGGTCCGTG]




>consensus_7355#0
GAAGTTAGATTCTTGATATGTCGCGTAATACTTGAGTCCTCGAACGCTAGAACCCTTCCA
AGTCGCAAAATCATAAGACAGAAGTCAAATAGAAGGAATGTTATTCCAAACAGTGTCAAC
TATGGTACAGAACTGTCAGGTATTTATAGTTTTTAGTAGAAACGAAATTATCATTAAAGT
TATCCAATCTGCACACAGGAGGTTATTAGCGTTCTTCAATAGGGAAAGCTACACTTAGTG
ATTCTAAAATATTTTTCCAGAAACTGATTGGATGAAATATGTTCGGCTCATTCTGGGCTT
CTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACG
ATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTA
CAATACTTCCCTCAGTCATTCCTTCCTCCACAACGAACGTCAACACTAACACCAACACCT
CTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCAC
TAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAA
TTCCCACGATCTCCGGTCCCCGCTCACCCGCCACTTCAATTCCCACGATCTCCGGTCCGT
G

consensusID : consensus_7355#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 343
fasta sequence

                              [CAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCCACTAAGCAAATATCT]

[-] EMBL CD135941             [CAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCCGGTTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCCACTAAGCAAATATCT]




>consensus_7355#1
CAACGAACGTCAACACTAACACCAACACCTCTTTACTAGCACAATGTGACTACTACGACT
ACACAACCGATGGATGACAACGACAACCACTAACACAATTCAATCAGTCAACCAACACGC
TCAATACCCACTAACACATTTACACTTCAATTCCCACGATCTCCGGTCCGTGTACATCGC
CTCCTGATCTCTCAGTCGTCACCGTCTATCGCTCCATTCCACAACAAGTTCAGTTCCCGG
TTGATTACTCAACTCCTCATCCCATCGCCATCCGGCACTCACCAACACATTCATTCACCC
ACACGCTTGCTTGCTCGGTCACGCACCCACTAAGCAAATATCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7355#0      GAAGTTAGATTCTTGATATGTCGCGTAATACTTGAGTCCTCGAACGCTAGAACCCTTCCA 60
consensus_7355#1      ------------------------------------------------------------
                                                                                  

consensus_7355#0      AGTCGCAAAATCATAAGACAGAAGTCAAATAGAAGGAATGTTATTCCAAACAGTGTCAAC 120
consensus_7355#1      ------------------------------------------------------------
                                                                                  

consensus_7355#0      TATGGTACAGAACTGTCAGGTATTTATAGTTTTTAGTAGAAACGAAATTATCATTAAAGT 180
consensus_7355#1      ------------------------------------------------------------
                                                                                  

consensus_7355#0      TATCCAATCTGCACACAGGAGGTTATTAGCGTTCTTCAATAGGGAAAGCTACACTTAGTG 240
consensus_7355#1      ------------------------------------------------------------
                                                                                  

consensus_7355#0      ATTCTAAAATATTTTTCCAGAAACTGATTGGATGAAATATGTTCGGCTCATTCTGGGCTT 300
consensus_7355#1      ------------------------------------------------------------
                                                                                  

consensus_7355#0      CTTAGAGCTTCCTCAACTTCACCAGTGAACCGTACTCGCATTTACACTTCAATTCCCACG 360
consensus_7355#1      ------------------------------------------------------------
                                                                                  

consensus_7355#0      ATCTCCGGTCCGTGTACATCGCCTCCATTATTCATTGTCCTCCTTCACTCTACAACCGTA 420
consensus_7355#1      ------------------------------------------------------------
                                                                                  

consensus_7355#0      CAATACTTCCCTCAGTCATTCCTTCCTCCACAACGAACGTCAACACTAACACCAACACCT 480
consensus_7355#1      ------------------------------CAACGAACGTCAACACTAACACCAACACCT 30
                                                    ******************************

consensus_7355#0      CTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCAC 540
consensus_7355#1      CTTTACTAGCACAATGTGACTACTACGACTACACAACCGATGGATGACAACGACAACCAC 90
                      ************************************************************

consensus_7355#0      TAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAA 600
consensus_7355#1      TAACACAATTCAATCAGTCAACCAACACGCTCAATACCCACTAACACATTTACACTTCAA 150
                      ************************************************************

consensus_7355#0      TTCCCACGATCTCCGGTCCCCGCTCACCCGCCACT------TCAATTCCCACGATCT-CC 653
consensus_7355#1      TTCCCACGATCTCCGGTCCGTGTACATCGCCTCCTGATCTCTCAGTCGTCACCGTCTATC 210
                      *******************  *  ** *  *  **      *** *   ***  ***  *

consensus_7355#0      GGTCCGTG---------------------------------------------------- 661
consensus_7355#1      GCTCCATTCCACAACAAGTTCAGTTCCCGGTTGATTACTCAACTCCTCATCCCATCGCCA 270
                      * *** *                                                     

consensus_7355#0      ------------------------------------------------------------
consensus_7355#1      TCCGGCACTCACCAACACATTCATTCACCCACACGCTTGCTTGCTCGGTCACGCACCCAC 330
                                                                                  

consensus_7355#0      -------------
consensus_7355#1      TAAGCAAATATCT 343