These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7356#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 584 fasta sequence [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTCTCGAGGTCACTTAAGATTCGTTCAAAGGTCGTTCATAAATTATGGTCTCACCAACTTATCANATGCTCAATTCTATGTAGATTGTATATAACATGCCAATCAAC] [+] EMBL CD085150 [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTCTCGAGGTCACTTAAGATTCGTTCAAAGGTCGTTCATAAATTATGGTCTCACCAACTTATCANATGCTCAATTCTATGTAGATTGTATATAACATGCCAATCAAC] [+] EMBL CD085161 [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTTCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTCTCGAGGTCACTTAAGATTCGTTCANAGGTCGTTCATANATTATGGTCTCACCAACTTATCANATGCTCAATTCTATGT ] [+] EMBL CD085132 [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATTCTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATTTCTCGAGGTCACTTAAGATTC ] consensusID : consensus_7356#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [AAGTTTTTGAGCTATATGAAAGAAGTGTATCCACTTTAGTTATTTAGTTTTGTATAATATATTTTTACTCCATTCTGACTGTCTACTGATTGACTAACATTTCTCAAGGTCACTTAAGATTCTTTATGGACGAGTCAATCAGAGGCGTTTGAGGGATTTCAAGGTCACGGCGCCAACTTCAGTACCTGATGCTCATGTACGATCGGTTCACAGAGAATCTTAGAGAACACTTGACCATTAAGCGGCTACAACAAATGAAACTACTAAGAAGTTCCTGTATTTGTAAATACGAGTATTAAATGACTTTTAGACCTTGTGCAGACTACTGTGATGTTGTCCTTCGATGTAATATATGTTGACGGAAGACGTTTGCTAGAATACGAACCTTTATCGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCACCAACTGTATAATAAAAGCATCAGTAACGTTGGTCGCAATAATCGCAGATGTTACTGAAGCTTCCGCTGTTCAGTGGTATGAGTATTGTAGGGACATATTCATAATAAAAATGA] [-] EMBL CD096339 [AAGTTTTTGAGCTATATGAAAGAAGTGTATCCACTTTAGTTATTTAGTTTTGTATAATATATTTTTACTCCATTCTGACTGTCTACTGATTGACTAACATTTCTCAAGGTCACTTAAGATTCTTTATGGACGAGTCAATCAGAGGCGTTTGAGGGATTTCAAGGTCACGGCGCCAACTTCAGTACCTGATGCTCATGTACGATCGGTTCACAGAGAATCTTAGAGAACACTTGACCATTAAGCGGCTACAACAAATGAAACTACTAAGAAGTTCCTGTATTTGTAAATACGAGTATTAAATGACTTTTAGACCTTGTGCAGACTACTGTGATGTTGTCCTTCGATGTAATATATGTTGACGGAAGACGTTTGCTAGAATACGAACCTTTATCGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCACCAACTGTATAATAAAAGCATCAGTAACGTTGGTCGCAATAATCGCAGATGTTACTGAAGCTTCCGCTGTTCAGTGGTATGAGTATTGTAGGGACATATTCATAATAAAAATGA] consensusID : consensus_7356#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACTGTTGACGGAAAGAAG] [+] EMBL CD085377 [AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCGCCAACTGTATAATAAAAGCACCAGTAACATTGGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAGGGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACAAGCAATGATGAAGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACTATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGAACCTTTCTCTAACCTTGACTGTTGACGGAAAGAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7356#0 AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTG 60 consensus_7356#2 AATATATGTTGAAGGAAGACGTTTGCTAGAATAGGAATCTTTATTGCTCGATCCAGATTG 60 consensus_7356#1 ---AAGTTTTTGAGCTATATGAAAGA-AGTGTATCCACTTTAGTTATTTAGTTTTGTATA 56 * * ** ** * * * * ** ** * ** ** * * * * consensus_7356#0 AGACTAAGGCATATTATAATAATTGCC-GCCAACTGTATAATAAAAGCACCAGTAACATT 119 consensus_7356#2 AGACTAAGGCATATTATAATAATTGCC-GCCAACTGTATAATAAAAGCACCAGTAACATT 119 consensus_7356#1 ATATATTTTTACTCCATTCTGACTGTCTACTGATTGACTAACATTTCTCAAGGTCACTTA 116 * * * ** * * ** * * * ** *** * ** ** * consensus_7356#0 GGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAG 179 consensus_7356#2 GGCTGCAATAATCGCAGATGTTACTAAAGCTTCGGCTGTTCAGTTGTATGAATGTTGTAG 179 consensus_7356#1 AGAT----TCTTTATGGACG--AGTCAATCAGAGGCGTTTGAGGGATTTCAAGGTCACGG 170 * * * * ** * * * ** * *** ** ** * * ** ** * consensus_7356#0 GGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACA-AGCAATGATGA 238 consensus_7356#2 GGACATATCCATAATAAAAATGATAAACATACACAACCGGAGTACACA-AGCAATGATGA 238 consensus_7356#1 CGCCAACTTCAGTACC----TGATGCTCATGTACGATCGGTTCACAGAGAATCTTAGAGA 226 * ** * ** * **** *** ** * *** *** * * * ** consensus_7356#0 AGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACT 298 consensus_7356#2 AGCTATGTGTTCTAGGCTGAGAGGGTTTTTGTGACCTTATCATGGTTCCAGAGACCAACT 298 consensus_7356#1 ACACTTGACCATTAAGCGGCTACAACAAATGAAACTACTAAGAAGTTCCTGTATTTGTAA 286 * ** ** ** * * ** ** ***** * consensus_7356#0 ATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGA 358 consensus_7356#2 ATTATGGAGCCAGATGGATGAGTTACTCTACCTTATGGATTACAATTTTGGAACCTTTGA 358 consensus_7356#1 ATACGAGTATTAAATGACTTTTAGACCTTG---TGCAGACTACTGTGATGTTGTCCTTCG 343 ** * * *** * ** * * ** *** * ** * ** consensus_7356#0 ACCTTTCTCTAACCTTGACATGTTTTGGGACCATATAGAAGAAGTGTATCCATTTCAATT 418 consensus_7356#2 ACCTTTCTCTAACCTTGAC---TGTTGA---CGGAAAGAAG------------------- 393 consensus_7356#1 A--TGTAATATATGTTGACG------GAAGACGTTTGCTAGAA---TACGAACCTTTATC 392 * * * * ***** * * ** consensus_7356#0 CTTTGGTTTTGTATAATATATCTTTACTCTATGTTGACTGTTAACTGATTGGCTAACATT 478 consensus_7356#2 ------------------------------------------------------------ consensus_7356#1 GCTCGATCCAGATTGAGACTAAGGCATATTATAATAATTGCCA-CCAACTGTATAATAAA 451 consensus_7356#0 TCTCGAGGTCACTTAAGATTCGTTCAAAGGTCGTTCATAAATTATGGTCTCACCAACTTA 538 consensus_7356#2 ------------------------------------------------------------ consensus_7356#1 ----AGCATCAGTAACGTTGGTCGCAATAATCG--CAGATGTTACTGAAGCTTCCGCTGT 505 consensus_7356#0 TCANATGCTCAATTCTATGTAGATTGTATATAACATGCCAATCAAC 584 consensus_7356#2 ---------------------------------------------- consensus_7356#1 TCAGTGGTATGAGTATTGTAGGGACATATTCATAATAAAAATGA-- 549 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||