These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1152 fasta sequence [GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCT-CCCAGCANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTG-AAGCTG-TCACTTACC-ATATTA-TAGA-CTGATCTA-CAGATTTATC-TCAGGGATTAAATTC-TATTGGAAGACGACGAT-TCTAGATG-AGATCGTTCCGTCC-CACTTGAAAGGAGCCTGGAAATGACTATGAACTCAATNNTAAATTTCTGATTTTGCATTTGACACAATCACTAGTCTATACTGCATTNCTGTATGTCATCATCACTCTAGAAATAAAGCGTATTAGATTCATGTAT-GCATTCTGCCATAG-TAAATATCCCTTATTATCTTTNTACATTCA] [+] EMBL CD081532 [GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCT CCCAGCANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTG AAGCTG TCACTTACC ATATTA TAGA CTGATCTA CAGATTTATC TCAGGGATTAAATTC TATTGGAAGACGACGAT TCTAGATG AGATCGTTCCGTCC CACTTGAAAGGAGCCTGGAAATGACTATGAACTCAATNNTAAATTTCTGATTTTGCATTTGACACAATCACTAGTCTATACTGCATTNCTGTATGTCATCATCACTCTAGAAATAAAGCGTATTAGATTCATGTAT GCATTCTGCCATAG TAAATATCCCTTATTATCTTTNTACATTCA] [+] EMBL CD081531 [ tGNAATTCGGCACCAGGTGCACCTAGNCCAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTNTCCTCTGCCTCCCCAGCA GAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTCCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTATCTTCAGGGATTAAATTCATATTGAAAGCAGACGATCCCTAGATGAAGATCGTT CGTCCACACTTGAAAAGAGCCTGGAAATGACTTCGAACTCAAT TTAAATTCCTGATTTTGCATTTGAC CAATCACTAGTCTATACTGCATT CTGTATGTCATCGACACTCTA ATATAAA CGTATTAGA TCATG ATGGCATT TG CATAGCTAAATATCACT CTATCTATTTACtta ] consensusID : consensus_7358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 545 fasta sequence [AGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAACTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA] [-] EMBL CD075354 [AGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACCCAAATTCAACTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA] [-] EMBL CD075355 [ GCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAACTAGTTTTTAATCCCTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTTTCATGTAATAAAGA] [+] EMBL SM670 [ CACAAATTCAACTAGTTCTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTA TTCAGGAATTCGATct ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7358#0 GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGG 60 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 ATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGG 120 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 ACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTT 180 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 TTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTT 240 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 TTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACG 300 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 TGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATG 360 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 TATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCC 420 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 CTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCC 480 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 ATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATC 540 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 GAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTA 600 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 TGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGA 660 consensus_7358#1 ------------------------------------------------------------ consensus_7358#0 GATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTG 720 consensus_7358#1 ------------------------------------------------------AGTTTG 6 ****** consensus_7358#0 CACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAG 780 consensus_7358#1 CACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAG 66 ************************************************************ consensus_7358#0 CANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAA-T 839 consensus_7358#1 CAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAAT 126 ** ********************************** ******************** * consensus_7358#0 ATCTGAATTTCGAAGA-TATATAGAATATCGGGTGTGAA-GCTGT-CACTTACCA-TATT 895 consensus_7358#1 ATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATT 186 **************** ********************** ***** ********* **** consensus_7358#0 AT-AGAC-TGATCTAC--AGATTTATCT-CAGGGATTAAATTC--TATTGGAA-GAC-GA 946 consensus_7358#1 ATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGA 246 ** **** ******** ******** *********** * ******** *** ** consensus_7358#0 CGATTC--TAGATGA-GATCGTTCCGTCCC---ACTTGAAAGG--AGCCT--GGAAATGA 996 consensus_7358#1 CGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGA 306 ****** ******* ******* *** ** ******** * ***** * ****** consensus_7358#0 -CTAT--GAACTCAA-TNNTAAA---TTTCTGATTTT--GCATTTGACACA---ATC--A 1042 consensus_7358#1 ACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAA 366 **** ******* * **** ** ******** ****** *** ** * consensus_7358#0 CTAGTCTATACT-----GCATTNCTGTATGTCAT--CATC-------ACTCTAGAAATAA 1088 consensus_7358#1 CTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAA 426 ***** * ** * **** **** * * * *** ***** * **** consensus_7358#0 AGCGTATTAGATTCATGTATGCATTCTGCCATAGTAAATATCCCTTATTATCTTTNTACA 1148 consensus_7358#1 ATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCT 486 * * * * * * * **** **** * ** * * * * consensus_7358#0 TTCA------------------------------------------------------- 1152 consensus_7358#1 TAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA 545 * * |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||