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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7358#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1152 fasta sequence
[GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCT-CCCAGCANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTG-AAGCTG-TCACTTACC-ATATTA-TAGA-CTGATCTA-CAGATTTATC-TCAGGGATTAAATTC-TATTGGAAGACGACGAT-TCTAGATG-AGATCGTTCCGTCC-CACTTGAAAGGAGCCTGGAAATGACTATGAACTCAATNNTAAATTTCTGATTTTGCATTTGACACAATCACTAGTCTATACTGCATTNCTGTATGTCATCATCACTCTAGAAATAAAGCGTATTAGATTCATGTAT-GCATTCTGCCATAG-TAAATATCCCTTATTATCTTTNTACATTCA]
[+] EMBL CD081532 [GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCT CCCAGCANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTG AAGCTG TCACTTACC ATATTA TAGA CTGATCTA CAGATTTATC TCAGGGATTAAATTC TATTGGAAGACGACGAT TCTAGATG AGATCGTTCCGTCC CACTTGAAAGGAGCCTGGAAATGACTATGAACTCAATNNTAAATTTCTGATTTTGCATTTGACACAATCACTAGTCTATACTGCATTNCTGTATGTCATCATCACTCTAGAAATAAAGCGTATTAGATTCATGTAT GCATTCTGCCATAG TAAATATCCCTTATTATCTTTNTACATTCA]
[+] EMBL CD081531 [ tGNAATTCGGCACCAGGTGCACCTAGNCCAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTNTCCTCTGCCTCCCCAGCA GAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTCCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTATCTTCAGGGATTAAATTCATATTGAAAGCAGACGATCCCTAGATGAAGATCGTT CGTCCACACTTGAAAAGAGCCTGGAAATGACTTCGAACTCAAT TTAAATTCCTGATTTTGCATTTGAC CAATCACTAGTCTATACTGCATT CTGTATGTCATCGACACTCTA ATATAAA CGTATTAGA TCATG ATGGCATT TG CATAGCTAAATATCACT CTATCTATTTACtta ]
consensusID : consensus_7358#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 545 fasta sequence
[AGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAACTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA]
[-] EMBL CD075354 [AGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACCCAAATTCAACTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA]
[-] EMBL CD075355 [ GCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAACTAGTTTTTAATCCCTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTTTCATGTAATAAAGA]
[+] EMBL SM670 [ CACAAATTCAACTAGTTCTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTA TTCAGGAATTCGATct ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7358#0 GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGG 60
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 ATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGG 120
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 ACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTT 180
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 TTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTT 240
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 TTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACG 300
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 TGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATG 360
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 TATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCC 420
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 CTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCC 480
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 ATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATC 540
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 GAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTA 600
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 TGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGA 660
consensus_7358#1 ------------------------------------------------------------
consensus_7358#0 GATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTG 720
consensus_7358#1 ------------------------------------------------------AGTTTG 6
******
consensus_7358#0 CACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAG 780
consensus_7358#1 CACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAG 66
************************************************************
consensus_7358#0 CANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAA-T 839
consensus_7358#1 CAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAAT 126
** ********************************** ******************** *
consensus_7358#0 ATCTGAATTTCGAAGA-TATATAGAATATCGGGTGTGAA-GCTGT-CACTTACCA-TATT 895
consensus_7358#1 ATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATT 186
**************** ********************** ***** ********* ****
consensus_7358#0 AT-AGAC-TGATCTAC--AGATTTATCT-CAGGGATTAAATTC--TATTGGAA-GAC-GA 946
consensus_7358#1 ATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGA 246
** **** ******** ******** *********** * ******** *** **
consensus_7358#0 CGATTC--TAGATGA-GATCGTTCCGTCCC---ACTTGAAAGG--AGCCT--GGAAATGA 996
consensus_7358#1 CGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGA 306
****** ******* ******* *** ** ******** * ***** * ******
consensus_7358#0 -CTAT--GAACTCAA-TNNTAAA---TTTCTGATTTT--GCATTTGACACA---ATC--A 1042
consensus_7358#1 ACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAA 366
**** ******* * **** ** ******** ****** *** ** *
consensus_7358#0 CTAGTCTATACT-----GCATTNCTGTATGTCAT--CATC-------ACTCTAGAAATAA 1088
consensus_7358#1 CTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAA 426
***** * ** * **** **** * * * *** ***** * ****
consensus_7358#0 AGCGTATTAGATTCATGTATGCATTCTGCCATAGTAAATATCCCTTATTATCTTTNTACA 1148
consensus_7358#1 ATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCT 486
* * * * * * * **** **** * ** * * * *
consensus_7358#0 TTCA------------------------------------------------------- 1152
consensus_7358#1 TAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA 545
* *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||