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Schistosoma mansoni
cluster # 7358 cluster # 7358       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7358#0 length = 1152 sequences # 2  
consensus_7358#1 length = 545 sequences # 3  

consensusID : consensus_7358#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1152
fasta sequence
                              [GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCT-CCCAGCANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTG-AAGCTG-TCACTTACC-ATATTA-TAGA-CTGATCTA-CAGATTTATC-TCAGGGATTAAATTC-TATTGGAAGACGACGAT-TCTAGATG-AGATCGTTCCGTCC-CACTTGAAAGGAGCCTGGAAATGACTATGAACTCAATNNTAAATTTCTGATTTTGCATTTGACACAATCACTAGTCTATACTGCATTNCTGTATGTCATCATCACTCTAGAAATAAAGCGTATTAGATTCATGTAT-GCATTCTGCCATAG-TAAATATCCCTTATTATCTTTNTACATTCA]

[+] EMBL CD081532             [GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCT CCCAGCANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTG AAGCTG TCACTTACC ATATTA TAGA CTGATCTA CAGATTTATC TCAGGGATTAAATTC TATTGGAAGACGACGAT TCTAGATG AGATCGTTCCGTCC CACTTGAAAGGAGCCTGGAAATGACTATGAACTCAATNNTAAATTTCTGATTTTGCATTTGACACAATCACTAGTCTATACTGCATTNCTGTATGTCATCATCACTCTAGAAATAAAGCGTATTAGATTCATGTAT GCATTCTGCCATAG TAAATATCCCTTATTATCTTTNTACATTCA]
[+] EMBL CD081531             [    tGNAATTCGGCACCAGGTGCACCTAGNCCAATAATATCACATATTGTTAACTTGGGATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGGACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTTTTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTTTTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACGTGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATGTATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCCCTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCCATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATCGAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTATGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGAGATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTNTCCTCTGCCTCCCCAGCA GAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTCCGAATATCTGAATTTCGAAGATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTATCTTCAGGGATTAAATTCATATTGAAAGCAGACGATCCCTAGATGAAGATCGTT CGTCCACACTTGAAAAGAGCCTGGAAATGACTTCGAACTCAAT TTAAATTCCTGATTTTGCATTTGAC CAATCACTAGTCTATACTGCATT CTGTATGTCATCGACACTCTA ATATAAA CGTATTAGA TCATG ATGGCATT TG CATAGCTAAATATCACT  CTATCTATTTACtta  ]


>consensus_7358#0 GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGG ATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGG ACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTT TTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTT TTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACG TGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATG TATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCC CTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCC ATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATC GAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTA TGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGA GATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTG CACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAG CANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAATA TCTGAATTTCGAAGATATATAGAATATCGGGTGTGAAGCTGTCACTTACCATATTATAGA CTGATCTACAGATTTATCTCAGGGATTAAATTCTATTGGAAGACGACGATTCTAGATGAG ATCGTTCCGTCCCACTTGAAAGGAGCCTGGAAATGACTATGAACTCAATNNTAAATTTCT GATTTTGCATTTGACACAATCACTAGTCTATACTGCATTNCTGTATGTCATCATCACTCT AGAAATAAAGCGTATTAGATTCATGTATGCATTCTGCCATAGTAAATATCCCTTATTATC TTTNTACATTCA



consensusID : consensus_7358#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 545
fasta sequence
                              [AGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAACTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA]

[-] EMBL CD075354             [AGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACCCAAATTCAACTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA]
[-] EMBL CD075355             [     GCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAACTAGTTTTTAATCCCTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTTTCATGTAATAAAGA]
[+] EMBL SM670                [                                                                                                                                                                                                                                                                                                                                                                   CACAAATTCAACTAGTTCTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAAATAAAAAGCGTCTA TTCAGGAATTCGATct                                                                                        ]


>consensus_7358#1 AGTTTGCACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCC TCCCAGCAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTT CGAAATATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACC AATATTATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAA GACAGACGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGA AAATGAACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAA ATTCAACTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTA AGATAAATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAAT AAGGCTTAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAAT AAAGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7358#0      GGCCAGNAATTCGGCACGAGGTGCACCTAGNACAATAATATCACATATTGTTAACTTGGG 60
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      ATATTTTTGAGTATTTTACCCTTACTGGATCTGTAGAATGTTAGAAATAGACGACTAAGG 120
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      ACCGTCAGTGGGTCGCTTTCGAATCAAATTGGATCATAAGTAGATGGGTATTTTTGTTTT 180
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      TTAGATCTTAAACATCTTATCAGATTAAAGGTATTGCGAAACAAGTTGTATCCGCCTCTT 240
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      TTTTTCATTTCCATACTTCATTTTTACCTCCCGTGATGTTGAACAGCGTAGCGGCTTACG 300
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      TGTTTACTTCATTAATTCAGGTATAATTTCCTGTTTTTGTCACACCAAAGTTCCTTTATG 360
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      TATATTTGTGGGGTATATCACGAGAGGTGTTATCCTGTTTTGCATATACTCTTCCTTCCC 420
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      CTCTAGATTGATCGGTAAAATCATGCAGTTATTTAAGTTTATACTCAGGAAGGATACTCC 480
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      ATTACAAATTGCCTATCGGTAAGACTTGATTACCACTTAGCTTTCATACAAATAGATATC 540
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      GAAGTTATGGTATCAAATTAAAAAGTTTTGATCCACCTTATTTGTCTGTCAAACCACCTA 600
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      TGCATGTTTATCAAAGTGTGCAGTTTGACATAAGAGGGCATGACTACGTGCAGCTAGAGA 660
consensus_7358#1      ------------------------------------------------------------
                                                                                  

consensus_7358#0      GATTCACTTCATACGTTCACAAGTTTTTCATCAATTGTGGTTATGAAGTTGAAAAGTTTG 720
consensus_7358#1      ------------------------------------------------------AGTTTG 6
                                                                            ******

consensus_7358#0      CACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAG 780
consensus_7358#1      CACCACTTTTAAATCAATTAATTTTCAATTATTTTAAATTAGTTTTCCTCTGCCTCCCAG 66
                      ************************************************************

consensus_7358#0      CANGAAGCTCTACCGACTATATCATACTAATTCGACANATATCCGGTCAGATTTCGAA-T 839
consensus_7358#1      CAAGAAGCTCTACCGACTATATCATACTAATTCGACAAATATCCGGTCAGATTTCGAAAT 126
                      ** ********************************** ******************** *

consensus_7358#0      ATCTGAATTTCGAAGA-TATATAGAATATCGGGTGTGAA-GCTGT-CACTTACCA-TATT 895
consensus_7358#1      ATCTGAATTTCGAAGAATATATAGAATATCGGGTGTGAAAGCTGTTCACTTACCAATATT 186
                      **************** ********************** ***** ********* ****

consensus_7358#0      AT-AGAC-TGATCTAC--AGATTTATCT-CAGGGATTAAATTC--TATTGGAA-GAC-GA 946
consensus_7358#1      ATTAGACCTGATCTACCAGAATTTATCTTCAGGGATTAAAATTCATATTGGAAAGACAGA 246
                      ** **** ********    ******** *********** *   ******** *** **

consensus_7358#0      CGATTC--TAGATGA-GATCGTTCCGTCCC---ACTTGAAAGG--AGCCT--GGAAATGA 996
consensus_7358#1      CGATTCCTTAGATGAAGATCGTTTCGTTCCCCAACTTGAAAAGGAAGCCTTGGAAAATGA 306
                      ******  ******* ******* *** **   ******** *  *****  * ******

consensus_7358#0      -CTAT--GAACTCAA-TNNTAAA---TTTCTGATTTT--GCATTTGACACA---ATC--A 1042
consensus_7358#1      ACTATCGAAACTCAAATTTTAAAAATTTCCTGATTTTTGGCATTTTGTACACAAATTCAA 366
                       ****   ******* *  ****   ** ********  ******   ***   **   *

consensus_7358#0      CTAGTCTATACT-----GCATTNCTGTATGTCAT--CATC-------ACTCTAGAAATAA 1088
consensus_7358#1      CTAGTTTTTAATCACTGACATTTCTGTTTATTGTTCCATTCGATCGAACTCTTAAGATAA 426
                      ***** * ** *      **** **** * *  *  ***        *****  * ****

consensus_7358#0      AGCGTATTAGATTCATGTATGCATTCTGCCATAGTAAATATCCCTTATTATCTTTNTACA 1148
consensus_7358#1      ATAAAAAGCGTCTATTTCAGGAATTCGATTGTAGTGGACATTTTCTGTACAAATAAGGCT 486
                      *    *   *  *  *  * * ****     ****  * **    * *     *    * 

consensus_7358#0      TTCA------------------------------------------------------- 1152
consensus_7358#1      TAAAATATCATCCCCCTATCATTAATTACTACTTTTTTACAATTCTCATGTAATAAAGA 545
                      *  *                                                       




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)