cluster # 7361

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Schistosoma mansoni
cluster # 7361 cluster # 7361 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7361#0 length = 942 sequences # 4

consensus_7361#1 length = 317 sequences # 1

consensusID : consensus_7361#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 942
fasta sequence

                              [CAGGTAAAGTTTATCTATTAAAAACGTACTTACCTAAAATCCCTCAAGCTGTTAATTGAAATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTGTTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAATAAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACATCTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAAACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAAAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTTTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTTTCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTATTTCTAAATTCAGAAATAACGTATTGCACTACTGGTGAATAGTCAAAAGGTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTAACTCCCAATTCAAATAGTCCTCGTGCCGAATNTTGGCTGCGAG]

[+] EMBL CD074374             [CAGGTAAAGTTTATCTATTAAAAACGTACTTACCTAAAATCCCTCAAGCTGTTAATTGAAATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTGTTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAATAAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACATCTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAAACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAAAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTTTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTTTCAGCTAGATGAACA                                                                                                                                                                                                                                                                           ]
[+] EMBL CD074364             [CAGGTAAAGTTTATCTATTAAAAACGTACTTACCCAAAATCCCTCAAGCTGTTAATTGAAATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTGTTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAATAAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACATCTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAAACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAAAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTNTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAA                                                                                                                                                                                                                                                                                                      ]
[-] EMBL CD080452             [                                                                                                                                                                                                                                                                                    AGTTGATNNTCATGATGTATGTAAACGTTCTCTA TGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTANAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTTTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTTTCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTATTTCTAAATTCAGAAATAACGTATTGCACTACTGGTGAATAGTCAAAAGGTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTAACTCCCAATTCAAATAGT                         ]
[-] EMBL CD080463             [                                                                                                                                                                                                                                                                                                                                             CAAATAGGATAGTTAATGTTGATTTAAAATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACCTATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAATATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTTGTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTTTTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTTTCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTATTTCTAAATTCAGAAATAACGTATTGCACTACTGGTGAATAGTCAAAAGGTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTAACTCCCAATTCAAATAGTCCTCGTGCCGAATNTTGGCTGCGAG]




>consensus_7361#0
CAGGTAAAGTTTATCTATTAAAAACGTACTTACCTAAAATCCCTCAAGCTGTTAATTGAA
ATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTG
TTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAAT
AAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACAT
CTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAA
ACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAA
AATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACC
TATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAAT
ATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTT
GTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTT
TTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTT
TCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTA
TTTCTAAATTCAGAAATAACGTATTGCACTACTGGTGAATAGTCAAAAGGTGCTCTTTGA
TTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGAC
ATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTAA
CTCCCAATTCAAATAGTCCTCGTGCCGAATNTTGGCTGCGAG

consensusID : consensus_7361#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 317
fasta sequence

                              [TGCACTACTGGTGAATAGTCAAAAGGTAACTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATCTATAGTTAGTGGTAGGATAAGTACTTCATGATGAAAAGATATAAAGAAATATTTTGAGGCAAAAAAATTGTACATTTAAGTTGATAATTTTAGAGATTTGACTAGTAAGTGTAAAGCCGTTTCATTACGAAACAACATTATTTTTTAGGACCAAAAAACATCAGATTCCCTCGTGCCGAATCTTGGCC]

[-] EMBL CD077915             [TGCACTACTGGTGAATAGTCAAAAGGTAACTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGATGAATTTATCTATAGTTAGTGGTAGGATAAGTACTTCATGATGAAAAGATATAAAGAAATATTTTGAGGCAAAAAAATTGTACATTTAAGTTGATAATTTTAGAGATTTGACTAGTAAGTGTAAAGCCGTTTCATTACGAAACAACATTATTTTTTAGGACCAAAAAACATCAGATTCCCTCGTGCCGAATCTTGGCC]




>consensus_7361#1
TGCACTACTGGTGAATAGTCAAAAGGTAACTGCTCTTTGATTCTTTCGAACGTGTCGAAG
TTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGACATTGTCGATTATTTGATGAT
GAATTTATCTATAGTTAGTGGTAGGATAAGTACTTCATGATGAAAAGATATAAAGAAATA
TTTTGAGGCAAAAAAATTGTACATTTAAGTTGATAATTTTAGAGATTTGACTAGTAAGTG
TAAAGCCGTTTCATTACGAAACAACATTATTTTTTAGGACCAAAAAACATCAGATTCCCT
CGTGCCGAATCTTGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7361#0      CAGGTAAAGTTTATCTATTAAAAACGTACTTACCTAAAATCCCTCAAGCTGTTAATTGAA 60
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      ATCACTCGAATAAATCGAGTTCTTACTCGAAAATTTGGTACTAATAGTGATGTAAATTTG 120
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      TTAAGAGATATGAAGTTTGTTCATGAATAATGATTAGTCAGTATTCTTTTATAGTGCAAT 180
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      AAATAACAGTTGGGTCAAGACACGGTGAAAGTTCATGAATCTTTTAAGATTGTGGTACAT 240
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      CTATCGGAAGGGATGATAAAAAACTCAACAGGAACCAGTTGATTTTCATGATGTATGTAA 300
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      ACGTTCTCTATTGAAGAACTATTTTACACAGAACAAATAGGATAGTTAATGTTGATTTAA 360
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      AATTAAAATCAAATTTTAAAACAGTATGAACAAAAGTATATGAATACTACCTTATAAACC 420
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      TATTCGAACATCTAATGAATTCATGCTAGAAACAATATCTAACAATGAAAATAGGAAAAT 480
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      ATACAATGGAATATATCCTAGGTAAAATATCATAAGTATTCCTATTATTTATGATAATTT 540
consensus_7361#1      ------------------------------------------------------------
                                                                                  

consensus_7361#0      GTTTCTGGTAGAGCTAATCCAACCATTTTGGCAGCTTCTTCAGTTGTTTTCTCTTTGGTT 600
consensus_7361#1      --------------------------------------------TGCACTACTGGTGAAT 16
                                                                  **   *     **  *

consensus_7361#0      TTATACAATTCCACGAGTTCTGAATGTTTTCGTAAACTTTGCAAATAATTTAAATATGTT 660
consensus_7361#1      AGTCAAAAGGTAACTGCTCTTTGATTCTTTCGAACGTGTCGAAGTTCACGGAGA-ATATT 75
                          * **    **   *  *  **  ***** *    * * *  * *   * * ** **

consensus_7361#0      TCAGCTAGATGAACACTTTCATTTTGTCTAGCACATTTTTGAGCATCGGTTAAATGATTA 720
consensus_7361#1      TCGG-------AATAGCTGAATCCT--CGATGACATTGTCGATTATTTGATGA-TGAATT 125
                      ** *       ** *  *  **  *  * *  ***** * **  **  * * * *** * 

consensus_7361#0      TTTCTAAATTCAGAAATAACGTATTGCACTAC-TGGTGAATAGTCAAAAGGTGCTCTTTG 779
consensus_7361#1      TATCTATAGTTAGTGGTAGGATAA-GTACTTCATGATGAAAAGATATAAAGAAATATTTT 184
                      * **** * * **   **   **  * *** * ** **** **  * ** *   * *** 

consensus_7361#0      ATTCTTTCGAACGTGTCGAAGTTCACGGAGAATATTTCGGAATAGCTGAATCCTCGATGA 839
consensus_7361#1      GAGGCAAAAAAATTGT--ACATTTAAGTTGATAATTTTAGAG-ATTTGACTAGTAAGTGT 241
                               **  ***  *  ** * *  **  ****  **  *  *** *  *   ** 

consensus_7361#0      CATTGTCGATTATTTGATGATGAATTTATTAAAAAATATCCGCAAACTCAGGAGCAAGTA 899
consensus_7361#1      AA-----AGCCGTTTCATTACGAAAC-----AACATTATTT-----TTTAGGACCAAAAA 286
                       *          *** ** * ***       ** * ***        * **** ***  *

consensus_7361#0      ACTCCCAATTCAAATAGTCCTCGTGCCGAATNTTGGCTGCGAG 942
consensus_7361#1      ACATCAGATTC-------CCTCGTGCCGAATCTTGGCC----- 317
                      **  *  ****       ************* *****