These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 774 fasta sequence [TGGGATGTCATCATCACACTATCTACACCAATCATCTATATGGTCTACACTTGGTCAAGAAATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTTTGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGAAAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTACCAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATGGAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCTAGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAACTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGGAGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGAAGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTAGTATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGTACTCATTAGTGTTGTGGCATTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTCTTACGGATTTTGTAAAGTTCAAGGTTTTTCGCTTATTGTTAAACAAATAGAAACTG] [-] EMBL CD061424 [TGGGATGTCATCATCACACTATCTACACCAATCATCTATATGGTCTACACTTGGTCAAGAAATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTTTGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGAAAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTACCAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATGGAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCTAGCCCGTAGCTTATTAGCTCAGAAACTTATCATTGATCTTGACAACTCCACAG AAACAACTTAG AAACCC ACAAGCAATAATTTACGTCACATAGCCAGTCAATTTGATCTGTATGGAGAGggt ] [+] EMBL CD080312 [ aggCCAATCATCTATATGGTCTACACTTGGTCAAGAAATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTTTGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGAAAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTACCAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATGGAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCTAGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAACTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGGAGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGAAGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTAGTATTTTTCAAGAATATAGNCACGACAGTAACT ] [-] EMBL CD074231 [ CACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTACCAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATGGAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATTTAGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAACTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGGAGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGAAGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTAGTATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGTACTCATTAGTGTTGTGGCATTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTCTTACGGATTTTGTAAAGTTCAAGGTTTTTCGCTTATTGTTAAACAAATAGAAACTG] [-] EMBL AW017266 [ ATCTTGACAACTCCACAGAAAACAACTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGGAGAGATTGCTGAAGATTATGCACATTTCNAAGAATATATAAGAAGGAAGAAATTAGATGAAGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTAGTATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGGACTCATTAGTGTTGTGGCATTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTCTTACGGATTTTGTAAAGTTCAAGCTTTTTCGCTTATTGTTTATCAAATAGAAACTG] consensusID : consensus_7363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 220 fasta sequence [TTACTGATACTCAACACTTTAGTTCTGTAGATAATAAACCTGATAAGTAGGTATTTTCAAAGAATATTGCACGGCAGTAACTAATCATGTACTCATAGTGTTGTGGCATTTAAGAATGGGCAACCAATGGGGAGAAAATTCGTTGTTTTTGGTAATTCTAAATTCTTACGGATTTGTAAAGTTCAAGCTTTTTCGCTTATTGTTTACAAATAGAAACTGA] [-] EMBL AI977793 [TTACTGATACTCAACACTTTAGTTCTGTAGATAATAAACCTGATAAGTAGGTATTTTCAAAGAATATTGCACGGCAGTAACTAATCATGTACTCATAGTGTTGTGGCATTTAAGAATGGGCAACCAATGGGGAGAAAATTCGTTGTTTTTGGTAATTCTAAATTCTTACGGATTTGTAAAGTTCAAGCTTTTTCGCTTATTGTTTACAAATAGAAACTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7363#0 TGGGATGTCATCATCACACTATCTACACCAATCATCTATATGGTCTACACTTGGTCAAGA 60 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 AATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTT 120 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 TGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGA 180 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 AAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTAC 240 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 CAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATG 300 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 GAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCT 360 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 AGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAA 420 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 CTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGG 480 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 AGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGA 540 consensus_7363#1 ------------------------------------------------------------ consensus_7363#0 AGATAATAATAATAATGATAATTCAACA-TTTAGTTCTGTAGATAATAAACCTGATAAGT 599 consensus_7363#1 -----------TTACTGATA-CTCAACACTTTAGTTCTGTAGATAATAAACCTGATAAGT 48 ** ***** ****** ******************************* consensus_7363#0 AG-TATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGTACTCATTAGTGTTGTGG 658 consensus_7363#1 AGGTATTTTCAAAGAATATTGCA-CGGCAGTAACTAATCATGTACTCAT-AGTGTTGTGG 106 ** **************** *** ** ********************** ********** consensus_7363#0 CATTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTC 718 consensus_7363#1 CATTTAAGAATGGGCAACCAATGGGGAGAAAATTCGTTGTTTTTGGTAA-TTCTAAATTC 165 ************ ********** ******************** ** * ****** *** consensus_7363#0 TTACGGATTTTGTAAAGTTCAAGGTTTTTCGCTTATTGTTAAACAAATAGAAACTG- 774 consensus_7363#1 TTACGGATTT-GTAAAGTTCAAGCTTTTTCGCTTATTGTTTA-CAAATAGAAACTGA 220 ********** ************ **************** * ************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||