cluster # 7363

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Schistosoma mansoni
cluster # 7363 cluster # 7363 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7363#0 length = 774 sequences # 4

consensus_7363#1 length = 220 sequences # 1

consensusID : consensus_7363#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 774
fasta sequence

                              [TGGGATGTCATCATCACACTATCTACACCAATCATCTATATGGTCTACACTTGGTCAAGAAATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTTTGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGAAAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTACCAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATGGAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCTAGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAACTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGGAGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGAAGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTAGTATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGTACTCATTAGTGTTGTGGCATTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTCTTACGGATTTTGTAAAGTTCAAGGTTTTTCGCTTATTGTTAAACAAATAGAAACTG]

[-] EMBL CD061424             [TGGGATGTCATCATCACACTATCTACACCAATCATCTATATGGTCTACACTTGGTCAAGAAATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTTTGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGAAAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTACCAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATGGAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCTAGCCCGTAGCTTATTAGCTCAGAAACTTATCATTGATCTTGACAACTCCACAG AAACAACTTAG AAACCC ACAAGCAATAATTTACGTCACATAGCCAGTCAATTTGATCTGTATGGAGAGggt                                                                                                                                                                                                                                                                                               ]
[+] EMBL CD080312             [                        aggCCAATCATCTATATGGTCTACACTTGGTCAAGAAATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTTTGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGAAAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTACCAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATGGAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCTAGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAACTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGGAGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGAAGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTAGTATTTTTCAAGAATATAGNCACGACAGTAACT                                                                                                                                             ]
[-] EMBL CD074231             [                                                                                                                                                                                             CACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTACCAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATGGAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATTTAGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAACTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGGAGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGAAGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTAGTATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGTACTCATTAGTGTTGTGGCATTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTCTTACGGATTTTGTAAAGTTCAAGGTTTTTCGCTTATTGTTAAACAAATAGAAACTG]
[-] EMBL AW017266             [                                                                                                                                                                                                                                                                                                                                                                                                           ATCTTGACAACTCCACAGAAAACAACTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGGAGAGATTGCTGAAGATTATGCACATTTCNAAGAATATATAAGAAGGAAGAAATTAGATGAAGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTAGTATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGGACTCATTAGTGTTGTGGCATTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTCTTACGGATTTTGTAAAGTTCAAGCTTTTTCGCTTATTGTTTATCAAATAGAAACTG]




>consensus_7363#0
TGGGATGTCATCATCACACTATCTACACCAATCATCTATATGGTCTACACTTGGTCAAGA
AATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTT
TGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGA
AAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTAC
CAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATG
GAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCT
AGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAA
CTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGG
AGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGA
AGATAATAATAATAATGATAATTCAACATTTAGTTCTGTAGATAATAAACCTGATAAGTA
GTATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGTACTCATTAGTGTTGTGGCA
TTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTCTT
ACGGATTTTGTAAAGTTCAAGGTTTTTCGCTTATTGTTAAACAAATAGAAACTG

consensusID : consensus_7363#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 220
fasta sequence

                              [TTACTGATACTCAACACTTTAGTTCTGTAGATAATAAACCTGATAAGTAGGTATTTTCAAAGAATATTGCACGGCAGTAACTAATCATGTACTCATAGTGTTGTGGCATTTAAGAATGGGCAACCAATGGGGAGAAAATTCGTTGTTTTTGGTAATTCTAAATTCTTACGGATTTGTAAAGTTCAAGCTTTTTCGCTTATTGTTTACAAATAGAAACTGA]

[-] EMBL AI977793             [TTACTGATACTCAACACTTTAGTTCTGTAGATAATAAACCTGATAAGTAGGTATTTTCAAAGAATATTGCACGGCAGTAACTAATCATGTACTCATAGTGTTGTGGCATTTAAGAATGGGCAACCAATGGGGAGAAAATTCGTTGTTTTTGGTAATTCTAAATTCTTACGGATTTGTAAAGTTCAAGCTTTTTCGCTTATTGTTTACAAATAGAAACTGA]




>consensus_7363#1
TTACTGATACTCAACACTTTAGTTCTGTAGATAATAAACCTGATAAGTAGGTATTTTCAA
AGAATATTGCACGGCAGTAACTAATCATGTACTCATAGTGTTGTGGCATTTAAGAATGGG
CAACCAATGGGGAGAAAATTCGTTGTTTTTGGTAATTCTAAATTCTTACGGATTTGTAAA
GTTCAAGCTTTTTCGCTTATTGTTTACAAATAGAAACTGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7363#0      TGGGATGTCATCATCACACTATCTACACCAATCATCTATATGGTCTACACTTGGTCAAGA 60
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      AATATCGTGGGATGCAGTTGGATTGATTGATTCACGCCTACTTTTAACACGTGCTTTTTT 120
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      TGCTTCTTCCGCTACTACCGGTGATGATGATAATGATATTGAACATAAGTCATCTAAAGA 180
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      AAAGAATTCCACTGCTCGATCTTTTTCCCACATACCTGATTCTAGTATAGGTAGACTTAC 240
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      CAAAGGTGTTGTTTTCTATCTTACTCCAAAAGATAAAAGATTAGTTGGTATACTACTATG 300
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      GAATATGCCTGATGAAATTTATACAGATACAAATTATCCTGCACCTAGTCGGCTTAATCT 360
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      AGCCCGTAGCTTATTAGCTCAAAAACTTATCATTGATCTTGACAACTCCACAGAAAACAA 420
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      CTTAGAAAACCCAAAAAGCAATAATTTACGTCAAATAGCCAGTCAATTTGATCTGTATGG 480
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      AGAGATTGCTGAAGATTATGCACATTTACAAGAATATATAAGAAGGAAGAAATTAGATGA 540
consensus_7363#1      ------------------------------------------------------------
                                                                                  

consensus_7363#0      AGATAATAATAATAATGATAATTCAACA-TTTAGTTCTGTAGATAATAAACCTGATAAGT 599
consensus_7363#1      -----------TTACTGATA-CTCAACACTTTAGTTCTGTAGATAATAAACCTGATAAGT 48
                                  ** *****  ****** *******************************

consensus_7363#0      AG-TATTTTCAAAGAATATAGCAACGACAGTAACTAATCATGTACTCATTAGTGTTGTGG 658
consensus_7363#1      AGGTATTTTCAAAGAATATTGCA-CGGCAGTAACTAATCATGTACTCAT-AGTGTTGTGG 106
                      ** **************** *** ** ********************** **********

consensus_7363#0      CATTTAAGAATGAGCAACCAATGAGGAGAAAATTCGTTGTTTTTTGTTACTTCTAATTTC 718
consensus_7363#1      CATTTAAGAATGGGCAACCAATGGGGAGAAAATTCGTTGTTTTTGGTAA-TTCTAAATTC 165
                      ************ ********** ******************** ** * ****** ***

consensus_7363#0      TTACGGATTTTGTAAAGTTCAAGGTTTTTCGCTTATTGTTAAACAAATAGAAACTG- 774
consensus_7363#1      TTACGGATTT-GTAAAGTTCAAGCTTTTTCGCTTATTGTTTA-CAAATAGAAACTGA 220
                      ********** ************ **************** * *************