cluster # 7364

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Schistosoma mansoni
cluster # 7364 cluster # 7364 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7364#0 length = 614 sequences # 2
consensus_7364#1 length = 410 sequences # 1

consensus_7364#2 length = 409 sequences # 1
consensus_7364#3 length = 258 sequences # 1

consensusID : consensus_7364#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 614
fasta sequence

                              [CCGGCCGCGGGAATTTGATTGCCCCGAACATCTACAGCCATCAATATCACCAACAAACTGATAAATAATAAAAAGACAATTGTCAATTGCACACACACACACACAACACCAAATCTCTCATCAAATTTATGCGTTTCTTCAATACTATCTCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTATCATCACCAAATTACGTCTCGCTTATCTAATTGTAAATTTAGTTACACAACAACAACAAACACACAAACAGTCAGTCAACCATCGAACATTACATAAACACCATCACAACACCACACACAACTATACTACCACATAAATCTACTCACCTCTCTTATCACTCGACACAATTAACGCCACAACCAGTTGGTACAAACACCAAATCACACCAACTCTCTACAATATAAACAAAATTTACATTATTAACACACAAATACACCACAATCCAACACACAATATACACTTGCATGCAACATTTCAGTATTCACTAAACTATATCATGTCTCGGTCAACAGACCGTCGTGAATATATTCACATCATATCATACACATCTCTCTCACTCACTCACACACACACACACACAACCAACATCTCATTCATTCATCCAT]

[-] EMBL CD089939             [CCGGCCGCGGGAATTTGATTGCCCCGAACATCTACAGCCATCAATATCACCAACAAACTGATAAATAATAAAAAGACAATTGTCAATTGCACACACACACACACAACACCAAATCTCTCATCAAATTTATGCGTTTCTTCAATACTATCTCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTATCATCACCAAATTACGTCTCGCTTATCTAATTGTAAATTTAGTTACACAACAACAACAAACACACAAACAGTCAGTCAACCATCGAACATTACATAAACACCATCACAACACC                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD187599             [                                                                                                                                                                                   GGCAAGTTATCATCACCAAATTACGTCTCGCTTACCTAATTGCAAATTTAGTTACACAACAACAACAAACACACAAACAGTCAGTCAACCATCGAACATTACATAAACACCATCACAACACCACACACAACTATACTACCACATAAATCTACTCACCTCTCTTATCACTCGACACAATTAACGCCACAACCAGTTGGTACAAACACCAAATCACACCAACTCTCTACAATATAAACAAAATTTACATTATTAACACACAAATACACCACAATCCAACACACAATATACACTTGCATGCAACATTTCAGTATTCACTAAACTATATCATGTCTCGGTCAACAGACCGTCGTGAATATATTCACATCATATCATACACATCTCTCTCACTCACTCACACACACACACACACAACCAACATCTCATTCATTCATCCAT]




>consensus_7364#0
CCGGCCGCGGGAATTTGATTGCCCCGAACATCTACAGCCATCAATATCACCAACAAACTG
ATAAATAATAAAAAGACAATTGTCAATTGCACACACACACACACAACACCAAATCTCTCA
TCAAATTTATGCGTTTCTTCAATACTATCTCAGATAGAGCCCAATCACTGATCATAGAGG
GCAAGTTATCATCACCAAATTACGTCTCGCTTATCTAATTGTAAATTTAGTTACACAACA
ACAACAAACACACAAACAGTCAGTCAACCATCGAACATTACATAAACACCATCACAACAC
CACACACAACTATACTACCACATAAATCTACTCACCTCTCTTATCACTCGACACAATTAA
CGCCACAACCAGTTGGTACAAACACCAAATCACACCAACTCTCTACAATATAAACAAAAT
TTACATTATTAACACACAAATACACCACAATCCAACACACAATATACACTTGCATGCAAC
ATTTCAGTATTCACTAAACTATATCATGTCTCGGTCAACAGACCGTCGTGAATATATTCA
CATCATATCATACACATCTCTCTCACTCACTCACACACACACACACACAACCAACATCTC
ATTCATTCATCCAT

consensusID : consensus_7364#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 410
fasta sequence

                              [CTTTTACAGCTATACTTAACTCATCTGATGGATGCATGAATTCTAGTTAACTCTAGACACTCTTTTCTTTTTCTTTTCAAAATTAATGTGATGGAATAATACGTGATCGTCGTGAACTGATCACATGGGAAATTTTTCATATTCCAGGAGACTAGTTAACTAAAAGGATTCAGTTGAAAGAGTATAGTAGTTTAGATTTTTCAATGAAATGCATACAACTGTTTGCAGTAACCAGTGGAGTTTAACCAAGTCTGTTGTAGAGATATCAACTCACTGAAGACGATTGGTGAACGGTTACTGAGCTTCGCGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGTATCAGTGGTCTATCGGTTAAGTGCTCTGGCACGAGACTGGTAGGTCCTGGGTTCGAATCTGG]

[+] EMBL CD128176             [CTTTTACAGCTATACTTAACTCATCTGATGGATGCATGAATTCTAGTTAACTCTAGACACTCTTTTCTTTTTCTTTTCAAAATTAATGTGATGGAATAATACGTGATCGTCGTGAACTGATCACATGGGAAATTTTTCATATTCCAGGAGACTAGTTAACTAAAAGGATTCAGTTGAAAGAGTATAGTAGTTTAGATTTTTCAATGAAATGCATACAACTGTTTGCAGTAACCAGTGGAGTTTAACCAAGTCTGTTGTAGAGATATCAACTCACTGAAGACGATTGGTGAACGGTTACTGAGCTTCGCGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGTATCAGTGGTCTATCGGTTAAGTGCTCTGGCACGAGACTGGTAGGTCCTGGGTTCGAATCTGG]




>consensus_7364#1
CTTTTACAGCTATACTTAACTCATCTGATGGATGCATGAATTCTAGTTAACTCTAGACAC
TCTTTTCTTTTTCTTTTCAAAATTAATGTGATGGAATAATACGTGATCGTCGTGAACTGA
TCACATGGGAAATTTTTCATATTCCAGGAGACTAGTTAACTAAAAGGATTCAGTTGAAAG
AGTATAGTAGTTTAGATTTTTCAATGAAATGCATACAACTGTTTGCAGTAACCAGTGGAG
TTTAACCAAGTCTGTTGTAGAGATATCAACTCACTGAAGACGATTGGTGAACGGTTACTG
AGCTTCGCGGATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGTATCAGTGGTCTA
TCGGTTAAGTGCTCTGGCACGAGACTGGTAGGTCCTGGGTTCGAATCTGG

consensusID : consensus_7364#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 409
fasta sequence

                              [TAATTTTATCCTATATTTGGGAATGTTTGAAGTGTTTTGTATAATAATTCATTAATAAGTGAGAATACAGTTGTGGGCGCGAAAATAAGATGTCCGTCAACGGTTTTATTGTTTTCTTTTTAGTTAGTTACAATTTAGTGAGCGCGATCAATGTGCAAGTGAGAATGTTTGCTTACTGAAGAGTCGTTTTGCAAAGACCATATTTAATAAAAATTAATAAAAAATTATTTTATAGAGTTCAGATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGAAGGCCGTTTCGTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGATCCCGCACTCGCGAGATTCGAACCCAGGATCTACCAGTCTCGCGCAAGAGCACTTAACCGATAAGACA]

[+] EMBL CD181973             [TAATTTTATCCTATATTTGGGAATGTTTGAAGTGTTTTGTATAATAATTCATTAATAAGTGAGAATACAGTTGTGGGCGCGAAAATAAGATGTCCGTCAACGGTTTTATTGTTTTCTTTTTAGTTAGTTACAATTTAGTGAGCGCGATCAATGTGCAAGTGAGAATGTTTGCTTACTGAAGAGTCGTTTTGCAAAGACCATATTTAATAAAAATTAATAAAAAATTATTTTATAGAGTTCAGATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGAAGGCCGTTTCGTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGATCCCGCACTCGCGAGATTCGAACCCAGGATCTACCAGTCTCGCGCAAGAGCACTTAACCGATAAGACA]




>consensus_7364#2
TAATTTTATCCTATATTTGGGAATGTTTGAAGTGTTTTGTATAATAATTCATTAATAAGT
GAGAATACAGTTGTGGGCGCGAAAATAAGATGTCCGTCAACGGTTTTATTGTTTTCTTTT
TAGTTAGTTACAATTTAGTGAGCGCGATCAATGTGCAAGTGAGAATGTTTGCTTACTGAA
GAGTCGTTTTGCAAAGACCATATTTAATAAAAATTAATAAAAAATTATTTTATAGAGTTC
AGATCATGAGTCAATTGAAGCTAGACCACCATCGAAAACCTGGAAGCACTGGAAGGCCGT
TTCGTCCTATTATGGGACTCCTCAGCAGTGCGCATCCACGATCCCGCACTCGCGAGATTC
GAACCCAGGATCTACCAGTCTCGCGCAAGAGCACTTAACCGATAAGACA

consensusID : consensus_7364#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 258
fasta sequence

                              [AGCGTTTATTCAATACTATATCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTATCATCACCAAATTACGTCTCGCTTACCGAATTACAAACAGATTTACACAACAACAACAACAACAACAACAACAAACAATCACTCAACCATCGAACATTACATAAACACCATAACAACACCACACACAACTATACTACCACATAAATCTACTCACCTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACA]

[-] EMBL CD155152             [AGCGTTTATTCAATACTATATCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTATCATCACCAAATTACGTCTCGCTTACCGAATTACAAACAGATTTACACAACAACAACAACAACAACAACAACAAACAATCACTCAACCATCGAACATTACATAAACACCATAACAACACCACACACAACTATACTACCACATAAATCTACTCACCTCTTTTATTACTCGACATAATTAGCGCCACAACCAGTTCGTACA]




>consensus_7364#3
AGCGTTTATTCAATACTATATCAGATAGAGCCCAATCACTGATCATAGAGGGCAAGTTAT
CATCACCAAATTACGTCTCGCTTACCGAATTACAAACAGATTTACACAACAACAACAACA
ACAACAACAACAAACAATCACTCAACCATCGAACATTACATAAACACCATAACAACACCA
CACACAACTATACTACCACATAAATCTACTCACCTCTTTTATTACTCGACATAATTAGCG
CCACAACCAGTTCGTACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7364#0      CCGGCCGCGGGAATTTGATTGCCCCGAACATCTACAGCCATCAATATCACCAACAAACTG 60
consensus_7364#3      ------------------------------------------------------------
consensus_7364#1      ------------------------------------------------------------
consensus_7364#2      ------------------------------------------------------------
                                                                                  

consensus_7364#0      ATAAATAATAAAAAGACAATTGTCAATTGCACACACACACACACAACACCAAATCTCTCA 120
consensus_7364#3      ------------------------------------------------------------
consensus_7364#1      -------------------------------------CTTTTACAGCTATACTTAACTCA 23
consensus_7364#2      ------------------------------TAATTTTATCCTATATTTGGGAATGTTTGA 30
                                                                                  

consensus_7364#0      TCAAATTTATGCGTTTCTTCAATACTATCTCAGA-TAGAGCCCAATCACTGATCATAGAG 179
consensus_7364#3      ---------AGCGTTTATTCAATACTATATCAGA-TAGAGCCCAATCACTGATCATAGAG 50
consensus_7364#1      TCTGATGGATGCATGAATTCTAGTTAACTCTAGA-CACTCTTTTCTTTTTCTTTTCAAAA 82
consensus_7364#2      AGTGTTTTGTATAATAATTCATTAATAAGTGAGAATACAGTTGTGGGCGCGAAAATAAGA 90
                                       ***      *    ***  *                   *   

consensus_7364#0      GGCAAGTTATCATCACCAAATTACGTCTCGCTTATCTAATTGTAAATTTAGTTACAC--- 236
consensus_7364#3      GGCAAGTTATCATCACCAAATTACGTCTCGCTTACCGAATTACAAACAGATTTACAC--- 107
consensus_7364#1      TTAATGTGAT-GGAATAATACGTGATCGTCGTGAACTGATCACATGGGAAATTTTTC--- 138
consensus_7364#2      TGTCCGTCA--ACGGTTTTATTGTTTTCTTTTTAGTTAGTTACAATTTAGTGAGCGCGAT 148
                           ** *          *     *     * *     *   *            *   

consensus_7364#0      --A-ACAACAACAAACACA---------CAAACAGTCAGTCAACCATCGAACATTACATA 284
consensus_7364#3      --A-ACAACAACAACAACAACAACAA--CAAACAATCACTCAACCATCGAACATTACATA 162
consensus_7364#1      --ATATTCCAGGAGACTAGTTAACTA--AAAGGATTCAGTTGAAAGAGTATAGTAGTTTA 194
consensus_7364#2      CAATGTGCAAGTGAGAATGTTTGCTTACTGAAGAGTCGTTTTGCAAA-GACCATATTTAA 207
                        *      *                    *  * **  *         *   *     *

consensus_7364#0      AACACCATCACAACACCACACACAACTAT-----ACTACCACATAAATCTACTCACCTCT 339
consensus_7364#3      AACACCATAACAACACCACACACAACTAT-----ACTACCACATAAATCTACTCACCTCT 217
consensus_7364#1      GATTTTTCAATGA-AATGCATACAACTGTTTGCAGTAACCAGTGGAGTTTAACCAAGTCT 253
consensus_7364#2      TAAAAATTAATAAAAAATTATTTTATAGAGTTCAGATCATGAGTCAATTGAAGCTAGACC 267
                       *       *  * *    *    *                    * *  *  *    * 

consensus_7364#0      CTTATCACTCGACACAATTAACGCCACAACCAGTTGGT--ACAAACACCAAATCACACCA 397
consensus_7364#3      TTTATTACTCGACATAATTAGCGCCACAACCAGTTCGT--ACA----------------- 258
consensus_7364#1      GTTGTAGA--GATATCAACT-CACTGAAGACGATTGGTGAACGGTTACTGAGCTTCGCGG 310
consensus_7364#2      ACCATCGAAAACCTGGAAGCACTGGAAGGCCGTTTCGT--CCTATTATGGGACTCCTCAG 325
                          *           *    *        *  ** **   *                  

consensus_7364#0      ACTCTCTACAATATAAACAAAATTTACATTATTAACACACAAATACACCACAATCCAACA 457
consensus_7364#3      ------------------------------------------------------------
consensus_7364#1      ATTGGTTGAAGTTAGACATTAACACCGTTGGATGCCGTATCAGTGGTCTATCGGTTAAGT 370
consensus_7364#2      -CAGTGCGCATCCACGATCCCGCACTCGCGAGATTCGAACCCAGGATCTACCAGTCTCGC 384
                                                                                  

consensus_7364#0      CACAATATACACTTGCATGCAACATTTCAGTATTCACTAAACTATATCATGTCTCGGTCA 517
consensus_7364#3      ------------------------------------------------------------
consensus_7364#1      GCTCTGGCACGAGACTGGTAGGTCCTGGGTTCGAATCTGG-------------------- 410
consensus_7364#2      GCAAGAGCACTTAACCGATAAGACA----------------------------------- 409
                                                                                  

consensus_7364#0      ACAGACCGTCGTGAATATATTCACATCATATCATACACATCTCTCTCACTCACTCACACA 577
consensus_7364#3      ------------------------------------------------------------
consensus_7364#1      ------------------------------------------------------------
consensus_7364#2      ------------------------------------------------------------
                                                                                  

consensus_7364#0      CACACACACACAACCAACATCTCATTCATTCATCCAT 614
consensus_7364#3      -------------------------------------
consensus_7364#1      -------------------------------------
consensus_7364#2      -------------------------------------