cluster # 7365

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Schistosoma mansoni
cluster # 7365 cluster # 7365 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7365#0 length = 593 sequences # 4

consensus_7365#1 length = 588 sequences # 1

consensusID : consensus_7365#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 593
fasta sequence

                              [GACGTATAATTCGCGAAATCCAGCTGTCAAACGGTTGATGAAAGAAGCACAAGAGCTCTAGAAGCCTACCGAACTATACTTTGCGAGACCTCTAGAGGATAATCTGTTCGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCTTTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAATGAAGAAGCCAATGAAGCTGCTGCTCAAATATCTATGATGAGTGAGGAAGAATTTAGAAATAAAAAAGCATTGGCTAATTCAAACACTTCTC]

[+] EMBL AI975908             [GACGTATAATTCGCGAAATCCAGCTGTCAAACGGTTGATGAAAGAAGCACAAGAGCTCTAGAAGCCTACCGAACTATACTTTGCGAGACCTCTAGAGGATAATCTGTTCGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAAGGCGGTTTATATAATGGCAGAATTCTTTTTCCTTCATAATATCCGATGAAGCCTGCAAATATCGTACTGTTAACTC                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CD096102             [                                                                                                            CGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCTTTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGGAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAATGAAGAAGCCAATGAAGCTGCTGCTCANATATCTATGATGAGTGAGGAAGAATTTAGAGATAAAAAAGCATTGGCTAATTCANACACTTCTC]
[+] EMBL CD096062             [                                                                                                            CGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCTTTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCGTGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAATGAAGAAGCCAATGAAGCTGCTGCTCAAATATCTATGATGAGTGAGGAAGAATTTAGAAATAAAAAAGCATTGGCTAATTCAAACA      ]
[+] EMBL CD095866             [                                                                                                            CGAATGGCACTTCACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCTTTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAACGAAGAAGCCAATGAAGCTGCTGCTCAAATATCTATGATGAGTGAGGAAGAATTTAGAAATACAAAAGCATTGGCTAATTCAAACA      ]




>consensus_7365#0
GACGTATAATTCGCGAAATCCAGCTGTCAAACGGTTGATGAAAGAAGCACAAGAGCTCTA
GAAGCCTACCGAACTATACTTTGCGAGACCTCTAGAGGATAATCTGTTCGAATGGCACTT
CACGATTAGAGGTCCTGAAGATTCTGACTTTCAGGGCGGTTTATATCATGGAAGAATTCT
TTTTCCTTCAGAATATCCGATGAAGCCTCCAAATATCGTACTGTTAACTCCAAATGGACG
TTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAG
ACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGG
TGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAA
ATCACAGAGTTACGTTTGCAGCATATGTGGACCAACTAACAATTTACTTCTACCCTTAAC
TACCGCTTCATCATCAATGAATGAAGAAGCCAATGAAGCTGCTGCTCAAATATCTATGAT
GAGTGAGGAAGAATTTAGAAATAAAAAAGCATTGGCTAATTCAAACACTTCTC

consensusID : consensus_7365#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 588
fasta sequence

                              [TTAGCCAGAATAACAGCATCGTTTGGATTATAAAGTATATAACTCAATATCCTGGGATGTTGTCAATATAGCTCGTAGTGGAGATTAGTAGCGTCCGTATTGTAATTTAATTTTGCATTTTTAAAAACTACAAATAGGAAATTTAGGATGAATGCTTTTATTTAACCTATTTCCTTTGGTATTATTCTGACTTTCACTCTTTATTTTCTCACATTATTATTTTCTCTCCTCTTACATTCCTTGATATGTTATTTTATCAAGCATTTTTTGTTACGATAGCATCGCAAAATACTCTAAAATGTAGTCACTTTGTGGTCCACTTAAGTACGTATAAGGTGTTCCTAAATATCTATTAACACACCATTTTTTCTCTTCAGCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAACTGACTGACTATTATTTTAC]

[+] EMBL CD202351             [TTAGCCAGAATAACAGCATCGTTTGGATTATAAAGTATATAACTCAATATCCTGGGATGTTGTCAATATAGCTCGTAGTGGAGATTAGTAGCGTCCGTATTGTAATTTAATTTTGCATTTTTAAAAACTACAAATAGGAAATTTAGGATGAATGCTTTTATTTAACCTATTTCCTTTGGTATTATTCTGACTTTCACTCTTTATTTTCTCACATTATTATTTTCTCTCCTCTTACATTCCTTGATATGTTATTTTATCAAGCATTTTTTGTTACGATAGCATCGCAAAATACTCTAAAATGTAGTCACTTTGTGGTCCACTTAAGTACGTATAAGGTGTTCCTAAATATCTATTAACACACCATTTTTTCTCTTCAGCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTATTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAGCTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAAAAGAAGAACGTCAGTTATTGGCTCGCAACTGACTGACTATTATTTTAC]




>consensus_7365#1
TTAGCCAGAATAACAGCATCGTTTGGATTATAAAGTATATAACTCAATATCCTGGGATGT
TGTCAATATAGCTCGTAGTGGAGATTAGTAGCGTCCGTATTGTAATTTAATTTTGCATTT
TTAAAAACTACAAATAGGAAATTTAGGATGAATGCTTTTATTTAACCTATTTCCTTTGGT
ATTATTCTGACTTTCACTCTTTATTTTCTCACATTATTATTTTCTCTCCTCTTACATTCC
TTGATATGTTATTTTATCAAGCATTTTTTGTTACGATAGCATCGCAAAATACTCTAAAAT
GTAGTCACTTTGTGGTCCACTTAAGTACGTATAAGGTGTTCCTAAATATCTATTAACACA
CCATTTTTTCTCTTCAGCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTA
TTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAG
CTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAA
AAGAAGAACGTCAGTTATTGGCTCGCAACTGACTGACTATTATTTTAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7365#0      ------------------------------------------------------------
consensus_7365#1      TTAGCCAGAATAACAGCATCGTTTGGATTATAAAGTATATAACTCAATATCCTGGGATGT 60
                                                                                  

consensus_7365#0      ------------------------------------------------GACGTATAATTC 12
consensus_7365#1      TGTCAATATAGCTCGTAGTGGAGATTAGTAGCGTCCGTATTGTAATTTAATTTTGCATTT 120
                                                                       *  *   *** 

consensus_7365#0      GCGAAATCCAGCTGTCAAACGGTT--GATGAAAGA--------AGCACAAGAGCTCTAGA 62
consensus_7365#1      TTAAAAACTACAAATAGGAAATTTAGGATGAATGCTTTTATTTAACCTATTTCCTTTGGT 180
                         *** * *    *   *   **  ****** *         * *  *    ** * * 

consensus_7365#0      AGCCTACCGAACTATACTTTGCGAGACCTCTAGAGGATAATCTGT-TCGAATGGCACTTC 121
consensus_7365#1      ATTATTCTGACTTTCACTCTTTATTTTCTCACATTATTATTTTCTCTCCTCTTACATTCC 240
                      *   * * **  *  *** *       ***       ** * * * **   *  ** * *

consensus_7365#0      ACGATTAGAGGTCCTGAAGATTCTGACTT-TCAGGGCGGTTT------ATATCATGGAA- 173
consensus_7365#1      TTGATATGTTATTTTATCAAGCATTTTTTGTTACGATAGCATCGCAAAATACTCTAAAAT 300
                        ***  *   *  *    *   *   ** * * *   *  *      ***   *  ** 

consensus_7365#0      GAATTCTTTTT-----CCTTCAGAATATCCG-ATGAAGCCTCCAAATATC-------GTA 220
consensus_7365#1      GTAGTCACTTTGTGGTCCACTTAAGTACGTATAAGGTGTTCCTAAATATCTATTAACACA 360
                      * * **  ***     **     * **     * *  *   * *******         *

consensus_7365#0      CTGTTAACTC--------CAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTA 272
consensus_7365#1      CCATTTTTTCTCTTCAGCCAAATGGACGTTTCGAAGTACATCGGAAAATATGTTTAAGTA 420
                      *  **   **        ******************************************

consensus_7365#0      TTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAG 332
consensus_7365#1      TTTCAGGACATCATCCCGAATCATGGAGACCATCATGGTCTATTCGTACTACATTGTTAG 480
                      ************************************************************

consensus_7365#0      CTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAA 392
consensus_7365#1      CTCTGATTGGATTCATGCCTACTTGTGGTGTCGGTGCAATTGGCTCACTTAATCAACCAA 540
                      ************************************************************

consensus_7365#0      AAGAAGAACGTCAGTTATTGGCTCGCAAATCACAGAGTTACGTTTGCAGCATATGTGGAC 452
consensus_7365#1      AAGAAGAACGTCAGTTATTGGCTCGCAACTGACTGACTATTATTTTAC------------ 588
                      **************************** * ** ** *    ***               

consensus_7365#0      CAACTAACAATTTACTTCTACCCTTAACTACCGCTTCATCATCAATGAATGAAGAAGCCA 512
consensus_7365#1      ------------------------------------------------------------
                                                                                  

consensus_7365#0      ATGAAGCTGCTGCTCAAATATCTATGATGAGTGAGGAAGAATTTAGAAATAAAAAAGCAT 572
consensus_7365#1      ------------------------------------------------------------
                                                                                  

consensus_7365#0      TGGCTAATTCAAACACTTCTC 593
consensus_7365#1      ---------------------