These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7366#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 599 fasta sequence [GGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTAATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACATATACATCTGCAACAGTTCCA] [+] EMBL CD126344 [GGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTAATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACATATACATCTGCAACAGTTCCA] [-] EMBL CD126364 [ GACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGCTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACA ] [-] EMBL CD126459 [ GACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAATGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGC ] [+] EMBL CD126589 [ GGACAACATCGGTTCCAACTAACATCACAACATCAGGTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATCAAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACAgggt ] consensusID : consensus_7366#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 138 fasta sequence [GGTACCCGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACCTCCACCATAGCCACCACCATAGCTGCCGCCACAGTCACCAC] [+] EMBL CD129392 [GGTACCCGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTGGACAAACGCAAACCTCCACCATAGCCACCACCATAGCTGCCGCCACAGTCACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7366#0 GGACAACATCGGTTCCAACTAACATCACAACATCAAGTACTGTAGCCACAAATACATCTG 60 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 CAACAGTTCCACAAGTGAACACAACTACTTCATTTGACACTTCACTAACGTCATCAACTG 120 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 GACAAACGCAAACATTCACTACAGATCGCACACCGGCAACATTCACGAGCACTCCATCCA 180 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 CATCCACATCAACACCAACAACACTCACTAATAATCAAACTTCACTGACATCCACATCTT 240 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 CCAGCCAACTGACAGAATCCGTGAGGACAACATCGGTTCCAACTAACATCACAACATCAA 300 consensus_7366#1 -----------------------------------------------------------G 1 consensus_7366#0 GTACTGTAGCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTG 360 consensus_7366#1 GTACCC--GCCACAAATACATCTGCAACAGTTCCACAAGTGAACACAACTACTTCATTTG 59 **** **************************************************** consensus_7366#0 ACACTTCACTAACGTCATCAACTGGACAAACGCAAACATTCACTACAGATCGCACACCGG 420 consensus_7366#1 ACACTTCACTAACGTCATCAACTGGACAAACGCAAACCTCCACCATAGCCACCACCATAG 119 ************************************* * *** * ** *** * consensus_7366#0 CAACATTCACGAGCACTCCATCCACATCCACATCAACACCAACAACACTCACTGATAATC 480 consensus_7366#1 CTGCCGCCACAGTCACCAC----------------------------------------- 138 * * *** *** * consensus_7366#0 AAACTTCACTGACATCCACATCTTCCAGCCAACTGACAGAATCCGTGAGGACAACATCGG 540 consensus_7366#1 ------------------------------------------------------------ consensus_7366#0 TTCCAACTAACATCACAACATCAAGTACTGTAGCCACATATACATCTGCAACAGTTCCA 599 consensus_7366#1 ----------------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||