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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7370#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 708 fasta sequence
[ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAGATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGCGGTGTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTATCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC]
[+] EMBL CD084090 [ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAGATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGC ]
[+] EMBL CD181268 [ AAAGTCTATTATCCTTATGATCCTGCACCATTTTGTGA TTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAGATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACC ]
[+] EMBL CD081479 [ AGCCCA ATTGTTTAGTTAAAATGC ACTAGATCCTGGAACAAGCAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTTATTATACATTACGTGTTTATTCAACAGCACCATTTACCTTGTCAAAAATCAAAGATCCCTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTATAAATGACAAAGAAAGTTATAGTACTAATCCACGATTCGAGATTAATGTACCAAATAATGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGCGGTGTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTATCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC]
[-] EMBL CD113148 [ TCTCTCGGTTAAATCCATAAGAAATTTTTCAATAACTCCCATACGATGAAGATAATGAAGAATATTATCACATCTCCCTCCTCCTCATTGTCATCATTACTCTGTTTTCTTTGAAGTCT ]
consensusID : consensus_7370#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence
[ATTTTGATTATTTTATGACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGGTAATTAATTGTGGTGAAAAAAATAGCTAATTGACATTTATATTTAACAGATTCTTAATTGTATTCATAGGTTCCATCCCCTTTCTCTGCCTACGTGGTTCTGAGCATTCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAACCCATGTACTCTTATTCAGTTACATTAACCGTACTCGATTAGCTTATTTTACAGTTTTAGTTCTTAGTATGCAGTTTGCAGTGCATGTCAATTGCTTCAGATTTCACGCTAATTAGTTTAACTAGATTTTTGTATTTCACTTAGTCCTTATTCGACCAGCTTAATAGAAGAATAAGTGCTTTTGGGCGGTAGTTGAA]
[+] EMBL CD165454 [ATTTTGATTATTTTATGACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAGGTAATTAATTGTGGTGAAAAAAATAGCTAATTGACATTTATATTTAACAGATTCTTAATTGTATTCATAGGTTCCATCCCCTTTCTCTGCCTACGTGGTTCTGAGCATTCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAACCCATGTACTCTTATTCAGTTACATTAACCGTACTCGATTAGCTTATTTTACAGTTTTAGTTCTTAGTATGCAGTTTGCAGTGCATGTCAATTGCTTCAGATTTCACGCTAATTAGTTTAACTAGATTTTTGTATTTCACTTAGTCCTTATTCGACCAGCTTAATAGAAGAATAAGTGCTTTTGGGCGGTAGTTGAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7370#0 ACGAGGGGTTGTTTATAAAGATGTAAAATCTCGTAAAGTCTATTATCCTTATGATCCTGC 60
consensus_7370#1 ------------------------------------------------------------
consensus_7370#0 ACCATTTTGTGAGTTCTGTACGTATTAATAGCCCACATTGTTTAGTTAAAATGCTTCAAG 120
consensus_7370#1 ------------------------------------------------------------
consensus_7370#0 ATCCTGGAACATGTAATTACATTCTTTTAATTTCACAATACGAGAAATCAATAACAATTT 180
consensus_7370#1 --------------------------------------------------------ATTT 4
****
consensus_7370#0 ATTATACATTACGTGTTTATTCAACAGC-ACCATTTACCTTGTCAAAAATCAAAG-ATCC 238
consensus_7370#1 TGATTATTTTATG-ACCTATTTTACAGAGATTATGCACTGGGCTTAGAATTAATTCGTAT 63
** *** * **** **** * ** ** * * *** ** *
consensus_7370#0 CTATACTATATCAAAACAAATTACTGGTGAATGGAAAGGATCAAATGCTGGCGGCTGTA- 297
consensus_7370#1 ATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAACTACTGGAGATTACAG 123
* * *** * * *** * * * ** ****** * **** * * *
consensus_7370#0 -TAAATGACAAAGAAAGTTATAGTA-CTAATCCACGATTCGAGATTAATGTACCAGATAA 355
consensus_7370#1 GTAATTAATTGTGGTGAAAAAAATAGCTAATTGAC-ATTTATATTTAACAGAT----TCT 178
*** * * * * * ** ***** ** *** **** * *
consensus_7370#0 TGATTGTGATAATCAGCTGTTGATTGAATTACGTGGACCAAGAGATTATGCACTGGGCTT 415
consensus_7370#1 TAATTGTATTCATAGGTT--CCATCCCCTTTCTCTGCCTACGTGGTT-----CTGAGCAT 231
* ***** * ** * * ** ** * * * * * * ** *** ** *
consensus_7370#0 AGAATTAATTCGTATATCTGCTACAAATGATCAAGCACCCAATCAGCAAAATCGATCAAC 475
consensus_7370#1 TCGATTAGCATCAGTAGTCTTCATATTAAGCTTGTGACCCAGTTTATGTATTTGAAC--C 289
**** ** * * ***** * * * ** * *
consensus_7370#0 TACTGGAGATTACAGAAGAGGATATGTTGTTCTAGAACAAGCTGGTCTTTCTGGC--GGT 533
consensus_7370#1 CATGTACTCTTATTCAGTTACATTAACCGTACTCGATTA-GCTTATTTTACAGTTTTAGT 348
* *** * ** ** ** ** * *** * ** * * **
consensus_7370#0 GTATACAATGTAATTGTTTCCACTTATCGACCTGGCCAAGAAGGACCATTTATTCTCTCG 593
consensus_7370#1 TCTTAGTATGCAGTTTGCAGTGCATGTCAAT-TGCTTCAGATTTCACGCTAATTAGTTTA 407
** *** * ** * * ** * ** *** * * *** *
consensus_7370#0 GTTAAATCCATAAGAAATTTTTCAATAACTCCCATATGATGAAGATAATTAAGAATATTA 653
consensus_7370#1 ACTAGATTTTTGTA----TTTCACTTAGTCCTTATTCGACCAGCTTAAT-AGAAGAATAA 462
** ** * *** ** * ** ** * **** * * ** *
consensus_7370#0 TCACATCTCCCTCCTNCTCATTGTCATCATTACTCTGGTTTCTTTGAAGTCTTAC 708
consensus_7370#1 GTGCTTTTGGGCGGTAGTTGAA--------------------------------- 484
* * * * *
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||