cluster # 7383

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Schistosoma mansoni
cluster # 7383 cluster # 7383 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7383#0 length = 328 sequences # 1

consensus_7383#1 length = 323 sequences # 4

consensusID : consensus_7383#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 328
fasta sequence

                              [ACCAATTTATCCATAAATTCGACAAGCGAAATCGGAGAGTCACATGTACGGTCATACGAATGATTAGAGAACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAGAATTGTTTGTATT]

[+] EMBL CD202350             [ACCAATTTATCCATAAATTCGACAAGCGAAATCGGAGAGTCACATGTACGGTCATACGAATGATTAGAGAACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAGAATTGTTTGTATT]




>consensus_7383#0
ACCAATTTATCCATAAATTCGACAAGCGAAATCGGAGAGTCACATGTACGGTCATACGAA
TGATTAGAGAACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTA
CACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGA
TATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAG
AATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGA
ACTTAAAAAGCGTAGAATTGTTTGTATT

consensusID : consensus_7383#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 323
fasta sequence

                              [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA-AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGAGA]

[+] EMBL CD199746             [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTACCAGG GGAAAAACCCCGATTTC TTTTACATCAGT AAGAAATCATTAAATGGTGATTTTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATAGAGAATGAAGAANATCGTGAATACATATCACAGCCAGAGAGA]
[+] EMBL CD199800             [AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAG   ]
[-] EMBL CD199721             [ GTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATATATATCACAGCCAGAGA  ]
[-] EMBL CD199634             [ GTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAAACCGATTACATATTA AACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAGATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAAAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTCATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTGAATACATATCACAGCCAGAGA  ]




>consensus_7383#1
AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAACAGGAGGAAAAAA
ACCGATTACATATTAAACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAAG
ATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTAA
AAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTTC
ATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGTG
AATACATATCACAGCCAGAGAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7383#0      -------------------------------------ACCAATTTATCCATAAATTCGAC 23
consensus_7383#1      AGTTAACATTCACCACTCTAGTGAATAATATGTAAGAACCCACTTAAC-AGGAGGAAAAA 59
                                                           *** * *** * *  *     * 

consensus_7383#0      AAGCGAA-----ATCGGAGAGTCACATGTACGGTCATACGAATGATTAGA---GAACCAA 75
consensus_7383#1      AACCGATTACATATTAAACAATAAAAAAATCAATAAAATGTGATATTTCATTTACACCAA 119
                      ** ***      **   * * * * *    *  * * * *    ***  *     *****

consensus_7383#0      GATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTA 135
consensus_7383#1      GATAACACAGTCCAAGTTTTCGTTTTAGAAATAGTCCAAGTGTTACACCTTGTCTAGGTA 179
                      ************************************************************

consensus_7383#0      AAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTT 195
consensus_7383#1      AAAGATTGATAGGTAATTTGTTATCAACAGCTGATGATATTCCGATATTTTGATTACTTT 239
                      ************************************************************

consensus_7383#0      CATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGT 255
consensus_7383#1      CATATAACTTGTCGTTGGTACAATATATTTGATGAGTAGATGGAGAATGAAGAAAATCGT 299
                      ************************************************************

consensus_7383#0      GAATACATATCACAGCCAGAGAGATACTATCCAGTAAGCGGTTGAACTTAAAAAGCGTAG 315
consensus_7383#1      GAATACATATCACAGCCAGAGAGA------------------------------------ 323
                      ************************                                    

consensus_7383#0      AATTGTTTGTATT 328
consensus_7383#1      -------------