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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 970 fasta sequence
[GAGGCGATCACAAATTCAGAGAAAATGACTTCTAAACTTAGGAATAATGCTTAACTTACGTGTCGACTTGGTGTTCTGAAATTCTAATTTAATAATAAGGGAATCATTATAGTGTTTTCGTTTTTAAAGCAGAGTATTTGAGAGACAAAACTATAAAATATATGGAGTATCAAAGGAAAAATAAAAGAACCCAGTTATCAAAATCTAGGAAACTGAAAGTAAATTTCAAAACATTAGCGATTATTTTATAAGTATCAATAGCAAGGTTTGGTTTGCCAATTCTAGGTTCATGATGTCGCGAAGCGCCAGAAATCCAATTTTCCCATTCAGATACCAGGAATACATCACTATTTTATTGGTATTGATGATTTCTATGAATTACCAAGTACCGTAAAAGTGTATAACTTAGGATACATAATTTTTTTGAAGGTACTACTTGGATCCATCTAATTATATGAGAGCTTTTCATATAACGAATATTTCAGTTCAGTAAATAAAAGATTTCTTCATCTAGGGAAACAATTTGAATTACTTCCTCACAAGAACGTGATTCAGTAAACATTTTTGTCCACTGATAAATGCGAATTTTTATCTACATGGAGTTGATTGTATTCACAGAAATACACTNTACGATCCAGTGATGTTAAGTATACGTTACATTTAATAGTTTAATATTTGAAACTGTGGAAACATGACGTGTAGTATCGGTTGGTATATATAGTTCATATACTTCATTCCAGCTTCTGGGACAGCCCATTACTNTTNCATCATGAGTCATGTNTTGACCTTGNTAANTATCACTTATCATCCTGACATNNTTTTATATGACGATGTGGTGTACCTTTTATCTATCATCAATGCTGTACTTAGCTATCGACTGGATATGACACCTTGGTAAGTGAGTGGCTACANCATTCATGCNGCATNTGCTNGTCCTGATTGCCATAGGTGCATCGACTGGCATGTAAAA]
[+] EMBL CD081902 [GAGGCGATCACAAATTCAGAGAAAATGACTTCTAAACTTAGGAATAATGCTTAACTTACGTGTCGACTTGGTGTTCTGAAATTCTAATTTAATAATAAGGGAATCATTATAGTGTTTTCGTTTTTAAAGCAGAGTATTTGAGAGACAAAACTATAAAATATATGGAGTATCAAAGGAAAAATAAAAGAACCCAGTTATCAAAATCTAGGAAACTGAAAGTAAATTTCAAAACATTAGCGATTATTTTATAAGTATCAATAGCAAGGTTTGGTTTGCCAATTCTAGGTTCATGATGTCGCGAAGCGCCAGAAATCCAATTTTCCCATTCAGATACCAGGAATACATCACTATTTTATTGGTATTGATGATTTCTATGAATTACCAAGTACCGTAAAAGTGTATAACTTAGGATACATAATTTTTTTGAAGGTACTACTTGGATCCATCTAATTATATGAGAGCTTTTCATATAACGAATATTTCAGTTCAGTAAATAAAAGATTTCTTCATCTAGGGAAACAATTTGAATTACTTCCTCACAAGAACGTGATTCAGTAAACATTTTTGTCCACTGATAAATGCGAATTTTTATCTACATGGAGTTGATTGTATTCACAGAAATACACTNTACGATCCAGTGATGTTAAGTATACGTTACATTTAATAGTTTAATATTTGAAACTGTGGAAACATGACGTGTAGTATCGGTTGGTATATATAGTTCATATACTTCATTCCAGCTTCTGGGACAGCCCATTACTNTTNCATCATGAGTCATGTNTTGACCTTGNTAANTATCACTTATCATCCTGACATNNTTTTATATGACGATGTGGTGTACCTTTTATCTATCATCAATGCTGTACTTAGCTATCGACTGGATATGACACCTTGGTAAGTGAGTGGCTACANCATTCATGCNGCATNTGCTNGTCCTGATTGCCATAGGTGCATCGACTGGCATGTAAAA]
consensusID : consensus_7384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence
[CGGGNNAATTCGAATTGCCAGTAGCCAAACCNTGTCCTGGGAAAATAACTTTGTATTTTGATAACATTCCTACGGAAATTGAAGGAATTGAGTGGATATCGAAAATCAACGCTACATTCGGATGTGGAATGTATTTTTTGGATCATGAAATACCTGTTCCTGCAAAATGGATCAAAAGTGGCACGTTGGTGGAGTATGAAGTCATCGGAAAAAATTGTTGGAAATTTGATACAAGTGAAGCATGCCAAGGAGCGACCACACCGAATATGAGATGTATTTGGTGTCCAAAAGTGAACAAATGTATAGAAAGTAATGATAATGACACTCATGGACTGAAAGTGAATGACTGCCATGTTGAGAATCACCAAAGCAGGATCACCGAAGCAACGTAGGAGCATACACCAGACAAGTCACATGGATACTTTGACTTTCTATATCCTCTGGTCTCTCTATTTTTCATGTTTTTCGGTTATATAATGTGAATGTGATTACTCATAAAAAAGAGCAGTGATGAATGATTCTCAAAAACGTCTTATAAATCGCTTTGAAAACTCTGTAAACGTTGTCTCAATTTCGTATTTCCATTGAATATTTTGAAATTTCTTTTTTGATT]
[+] EMBL CD162105 [CGGGNNAATTCGAATTGCCAGTAGCCAAACCNTGTCCTGGGAAAATAACTTTGTATTTTGATAACATTCCTACGGAAATTGAAGGAATTGAGTGGATATCGAAAATCAACGCTACATTCGGATGTGGAATGTATTTTTTGGATCATGAAATACCTGTTCCTGCAAAATGGATCAAAAGTGGCACGTTGGTGGAGTATGAAGTCATCGGAAAAAATTGTTGGAAATTTGATACAAGTGAAGCATGCCAAGGAGCGACCACACCGAATATGAGATGTATTTGGTGTCCAAAAGTGAACAAATGTATAGAAAGTAATGATAATGACACTCATGGACTGAAAGTGAATGACTGCCATGTTGAGAATCACCAAAGCAGGATCACCGAAGCAACGTAGGAGCATACACCAGACAAGTCACATGGATACTTTGACTTTCTATATCCTCTGGTCTCTCTATTTTTCATGTTTTTCGGTTATATAATGTGAATGTGATTACTCATAAAAAAGAGCAGTGATGAATGATTCTCAAAAACGTCTTATAAATCGCTTTGAAAACTCTGTAAACGTTGTCTCAATTTCGTATTTCCATTGAATATTTTGAAATTTCTTTTTTGATT]
consensusID : consensus_7384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 548 fasta sequence
[TAATCTCCATGTCAAATGCATATGAAAGTCCCTACCCGTGTTCTTGTTCCCTACACCATTATTGTTAGCCATATTTGTTTGTGATATATTTGCGCAATACATTTCGAACAATCTGATCACACATATACTTGTTAAGACTAAAAGGGCGATTAGACAGGTTAAAGGTAAGCAGTAACAAAGAAAACTACAGTACACAAAAACAATGTGATAATGACTCTGGATAATAAATCAGCATTACCAGCGTAGTTTAAAGGTAAGAACAGATTGTTTTTGAACATATAAAGTGGGTTTCAGTTTCAGCATACTCAAGGCTTCAGTAAACCCTAGTATTCGTCGAAATTTATCAAAGGGACTAATTGTATTAAATATTTAATTGTATGAACTTACTTAATAGTAGAAACAATGTTGAGAAAACTTTCTGACATTCCTTGACTAGATTTCTAATAATAGTTNTATATTTCAAAAAAATCAACCTGCTACAATATTAAGATTAGTTTAAATGACAGAGTAATGCTGACTGGGAGATCACTGTCTATCAGATAAGCAAT]
[+] EMBL CD132000 [TAATCTCCATGTCAAATGCATATGAAAGTCCCTACCCGTGTTCTTGTTCCCTACACCATTATTGTTAGCCATATTTGTTTGTGATATATTTGCGCAATACATTTCGAACAATCTGATCACACATATACTTGTTAAGACTAAAAGGGCGATTAGACAGGTTAAAGGTAAGCAGTAACAAAGAAAACTACAGTACACAAAAACAATGTGATAATGACTCTGGATAATAAATCAGCATTACCAGCGTAGTTTAAAGGTAAGAACAGATTGTTTTTGAACATATAAAGTGGGTTTCAGTTTCAGCATACTCAAGGCTTCAGTAAACCCTAGTATTCGTCGAAATTTATCAAAGGGACTAATTGTATTAAATATTTAATTGTATGAACTTACTTAATAGTAGAAACAATGTTGAGAAAACTTTCTGACATTCCTTGACTAGATTTCTAATAATAGTTNTATATTTCAAAAAAATCAACCTGCTACAATATTAAGATTAGTTTAAATGACAGAGTAATGCTGACTGGGAGATCACTGTCTATCAGATAAGCAAT]
[+] EMBL CD131988 [TAATCTCCATGTCAAATGCATATGAAAGTCCCTACCCGTGTTCTTGTTCCCTACACCATTATTGTTAGCCATATTTGTTTGTGATATATTTGCGCAATACATTTCGAACAATCTGATCACACATATACTTGTTAAGACTAAAAGGGCGATTAGACAGGTTAAAGGTAAGCAGTAACAAAGAAAACTACAGTACACAAAAACAATGTGATAATGACTCTGGATAATAAATCAGCATTACCAGCGTAGTTTAAAGGTAAGAACAGATTGTTTTTGAACATATAAAGTGGGTTTCAGTTTCAGCATACTCAAGGCTTCAGTAAACCCTAGTATTCGTCGAAATTTATCAAAGGGACTAATTGTATTAAATATTTAATTGTATGAACTTACTTAATAGTAGAAACAATGTTGAGAAAACTTTCTGACATTCCTTGACTAGATTTCTAATAATAGTTTTATATTTCAAAAAAATCAACCTGCTACAATATTAAGATTAGTTTAAATGACAGAGTAATGCTGACTGNGAGATCACTGTCTATCAGATAAGCAAT]
consensusID : consensus_7384#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence
[CTTAACTGGCTGTGCTAGGCAAATAGCAGGACCGACAAGTACTCTAGACTGCCCATATGGTTTTCGTGTATCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTTTTGCCACGTTATACATTATCAGGGCATCCACTCGACCACAAGTTATAACAAATATCCATATGGTTTTCGGCACATATAAAACGCTCTAGTTTTTCAGGTGACTTCTGCACCAAATGAACACGAAATGTATCTTGACTGACGTGTCATTGCCTAGTCTAATTATCAATAGAGATGAAAGTAGTTGAGTGTGTTAACCATCTCACTTGTTTCTATAGTTTAAGTAGTGCTGATGAAGTTTTGTCCTACTGAGTTCTTCGTACTATAACCAAAGCAACTGAAAAGT]
[+] EMBL CD183373 [CTTAACTGGCTGTGCTAGGCAAATAGCAGGACCGACAAGTACTCTAGACTGCCCATATGGTTTTCGTGTATCACTGTTCCAATCGATAATTCGCTGCTCCCTGATTGGCGGTTTTGCCACGTTATACATTATCAGGGCATCCACTCGACCACAAGTTATAACAAATATCCATATGGTTTTCGGCACATATAAAACGCTCTAGTTTTTCAGGTGACTTCTGCACCAAATGAACACGAAATGTATCTTGACTGACGTGTCATTGCCTAGTCTAATTATCAATAGAGATGAAAGTAGTTGAGTGTGTTAACCATCTCACTTGTTTCTATAGTTTAAGTAGTGCTGATGAAGTTTTGTCCTACTGAGTTCTTCGTACTATAACCAAAGCAACTGAAAAGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7384#0 GAGGCGATCACAAATTCAGAGAAAATGACTTCTAAACTTAGGAATAATGCTTAACTTACG 60
consensus_7384#2 ------------------------------------------------------------
consensus_7384#3 ------------------------------------------------------------
consensus_7384#1 ------------------------------------------------------------
consensus_7384#0 TGTCGACTTGGTGTTCTGAAATTCTAATTTAATAATAAGGGAATCATTATAGTGTTTTCG 120
consensus_7384#2 ------------------------------------------------------------
consensus_7384#3 ------------------------------------------------------------
consensus_7384#1 ------------------------------------------------------------
consensus_7384#0 TTTTTAAAGCAGAGTATTTGAGAGACAAAACTATAAAATATATGGAGTATCAAAGGAAAA 180
consensus_7384#2 ------------------------------------------------------------
consensus_7384#3 ------------------------------------------------------------
consensus_7384#1 ------------------------------------------------------------
consensus_7384#0 ATAAAAGAACCCAGTTATCAAAATCTAGGAAACTGAAAGTAAATTTCAAAACATTAGCGA 240
consensus_7384#2 ------------------------------------------------------------
consensus_7384#3 ------------------------------------------------------------
consensus_7384#1 ------------------------------------------------------------
consensus_7384#0 TTATTTTATAAGTATCAATAGCAAGGTTTGGTTTGCCAATTCTAGGTTCATGATGTCGCG 300
consensus_7384#2 --------------------------------------------TAATCTCCATGTCA-A 15
consensus_7384#3 ------------------------------------------------------------
consensus_7384#1 -------------------------------CGGGNNAATTCGAATTGCCAGTAGCCAAA 29
consensus_7384#0 AAGCGCC-AGAAATCCAATTTTCCCATTCAGATACCAGGAATACATCACTATT-TTATTG 358
consensus_7384#2 ATGCATA-TGAAAGTCCCTACCCGTGTTCTTGTTCC----CTACACCATTATTGTTAGCC 70
consensus_7384#3 ------------------------------------------------------------
consensus_7384#1 CCNTGTCCTGGGAAAATAACTTTGTATTTTGATAACATTCCTACGGAAATTGAAGGAATT 89
consensus_7384#0 GTATTGATGATTTCTATGAATTACCAAGTACCGTAAAAGTGTATAACTTAGGATACATAA 418
consensus_7384#2 ATATTTGTTTGTGATAT-ATTTGCGCAATACATTTCGAACA---ATCTGATCACACATAT 126
consensus_7384#3 --CTTAACTGGCTGTGCTAG--GCAAATAGCAGGACCGACAAGTACTCTAGACTGCCCAT 56
consensus_7384#1 GAGTGGATATCGAAAATCAAC-GCTACATTCGGATGTGGAATGTATTTTTTGGATCATGA 148
* * * * * *
consensus_7384#0 TTTTTTTGAAGGTACTACTTGGATCCAT--CTAATTATATGAGAGCTTTTCATATAACGA 476
consensus_7384#2 ACTTGTTAAGACTAAAAGGGCGATTAGA--CAGGTTAAAGGTAAGCAGTA---ACAAAGA 181
consensus_7384#3 ATGGTTTTCGTGTATCACT--GTTCCAA--TCGATAATTCGCTGCTCCCT--GATTGGCG 110
consensus_7384#1 AATACCTGTTCCTGCAAAATGGATCAAAAGTGGCACGTTGGTGGAGTATGAAGTCATCGG 208
* * * * * *
consensus_7384#0 ATATTTCAGTTCAGTAAATAAAAGATTTCTTCA-TCTAGGGAAACAATTTGAATTACTTC 535
consensus_7384#2 AAACTACAGTACACAAAAACAATGTGATAATGACTCTGGATAATAAATCAGCATTACC-- 239
consensus_7384#3 GTTTTGCCACGTTATACATTATCAGGGCATCCA--CTCGACCACAAGTTATAACAAATAT 168
consensus_7384#1 AAAAAATTGTTGGAAATTTGATACAAGTGAAGCATGCCAAGGAGCGACCACACCGAATAT 268
* * * *
consensus_7384#0 CTCACAAGAACGTGATTCAGTAAACATTTTTGTCCACTGATAAATGCGAATTTTTATCTA 595
consensus_7384#2 --------AGCGTAGTT---TAAAGGT--------AAGAACAGATT---GTTTTTGAACA 277
consensus_7384#3 C-------CATATGGTTTTCGGCACAT---------ATAAAACGCTCTAGTTTTTC---- 208
consensus_7384#1 G--AGATGTATTTGGTGTCCAAAAGTGAACAAATGTATAGAAAGTAATGATAATGACACT 326
* * * * * *
consensus_7384#0 CATGGAGTTGATTGTATTCACAGAAATAC----ACTNTACGATCCAGTGATGTTAAGTAT 651
consensus_7384#2 TATAAAGTGGGTTTCAGTTTCAG---CAT----ACTCAAGGCTTCAGTAAACCCTAGTAT 330
consensus_7384#3 -----AGGTGACTTCTGCACCAAATGAAC----ACGAAATGTATCTTGACTGACGTGTCA 259
consensus_7384#1 CATGGACTGAAAGTGAATGACTGCCATGTTGAGAATCACCAAAGCAGGATCACCGAAGCA 386
* * * *
consensus_7384#0 ACGTTACATTTAATAGTTTAATATTTGAAACTGTGGAAACATGACGTGTAGTATCGGTTG 711
consensus_7384#2 TCGTCGAAATTTAT----CAAAGGGACTAATTGTATTAA-ATATTTAATTGTATGAACTT 385
consensus_7384#3 TTGCCTAGTCTAATTAT-CAATAGAGATGAAAGTAGTTGAGTGTGTTAACCATCTCACTT 318
consensus_7384#1 ACGTAGGAGCATACA---CCAGACAAGTCACATGGATACTTTGACTTTCTATATCCTCTG 443
* * * * * *
consensus_7384#0 GTATATATAGTTCATATACTTCATTCCAGCTTCTGGGACAGCCCATTACTN---TTNCAT 768
consensus_7384#2 ACTTA-ATAGTAGAAACAATGTTGAGAAAACTTTCTGACATTCCTTGACTAGATTTCTAA 444
consensus_7384#3 GTTTCTATAGTTTAAGTAGTGCTGATGAAGTTTTGTCCTACTGAGTTCTTCGTACTATAA 378
consensus_7384#1 GTCTCTCTATTTTTCATGTTTTTCGGTTATATAATGTGAATGTGATTACTC-ATAAAAAA 502
* ** * * * * * * *
consensus_7384#0 CATGAGTCATGTNTTGACCTTGNTAANTATCACTTA-TCATCCTGACATNNTTTTATATG 827
consensus_7384#2 TAATAGTTNTATATTT-CAAAAAAATCAACCTGCTA-CAATATTAAGATTAGTTTAAATG 502
consensus_7384#3 CCAAAGCAACTGAAAAGT------------------------------------------ 396
consensus_7384#1 GAGCAGTGATGAATGATTCTCAAAAACGTCTTATAAATCGCTTTGAAAACTCTGTAAACG 562
**
consensus_7384#0 ACGATGTGGTGTACCTTTTATCTATCATCAATGCTGTACTTAGCTATCGACTGGATATGA 887
consensus_7384#2 ACAGAGTAATGC-TGACTGGGAGATCACTGTCTATCAGATAAGCAAT------------- 548
consensus_7384#3 ------------------------------------------------------------
consensus_7384#1 TTGTCTCAATTT-CGTATTTCCATTGAATATTTTGAAATTTCTTTTTTGATT-------- 613
consensus_7384#0 CACCTTGGTAAGTGAGTGGCTACANCATTCATGCNGCATNTGCTNGTCCTGATTGCCATA 947
consensus_7384#2 ------------------------------------------------------------
consensus_7384#3 ------------------------------------------------------------
consensus_7384#1 ------------------------------------------------------------
consensus_7384#0 GGTGCATCGACTGGCATGTAAAA 970
consensus_7384#2 -----------------------
consensus_7384#3 -----------------------
consensus_7384#1 -----------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||