cluster # 7385

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Schistosoma mansoni
cluster # 7385 cluster # 7385 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7385#0 length = 790 sequences # 2

consensus_7385#1 length = 582 sequences # 1
consensus_7385#2 length = 373 sequences # 2

consensusID : consensus_7385#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 790
fasta sequence

                              [TTTCTTCTTCTCCTTATTCTCGTCCTCCTCGTCCTCATCTAGATCTTCGACCATGTACAACACCTCGAATCCACGTTGAGTAAGTTTCTCAGCAAATGGTGAGTTCATCACTGCTTGCTTTGATTCACCTGTTATGTAGTAAATATCCTGCTGTTCAGGTTTCATACGTGACACATAGTCCTTCAGGCTAATCATTTCATCACCAGAAGCTGAAGAATAGAAACGTAATAATTCGGACAACTTCGCTCTATTCACACTATCTTCATGGATGCCCAATTTTATACTTTTTGAGAATTGCTCATAGAACTTCTTGTAGTTTTCTTTATCTTCTGCTATCTCTTCAAATAATTCAATACATTTCCTGACCAGGCTCTTACGGATGACCTTTAATACGTTGTTCTGTTGCAACACCTCACGACTGATGTTAAGAGGCAGGTCCTCGCTGTCGACAACTCCGCGAACGAAACTCAAGTACTCGGGAATCATATCCTCACAGGTATCCATGATGAGGACTCTTCGCACATACAATTTAATGTTGCTCCGCTTTTTCCGCGTCCCTTCAAACATATCAATTGGTGCGCGTTTAGGCACAAAAAGCAATGCACGGAACTCTAACTGACCTTCAACAGAAAAGTGCTTCACTGCAAGGTGGTCCTCCCAATCATTAGTTAACGACTTGTAAAACTCTGCATACTCTTCTGTAGTTATATCTTCGGGATTGCGCGTCCAGATGACAGTGAGATGCCGAAACGTGGCACTAAGGTGATATTACATCTGAAAGAAGACCAGC]

[+] EMBL CD121599             [TTTCTTCTTCTCCTTATTCTCGTCCTCCTCGTCCTCATCTAGATCTTCGACCATGTACAACACCTCGAATCCACGTTGAGTAAGTTTCTCAGCAAATGGTGAGTTCATCACTGCTTGCTTTGATTCACCTGTTATGTAGTAAATATCCTGCTGTTCAGGTTTCATACGTGACACATAGTCCTTCAGGCTAATCATTTCATCACCAGAAGCTGAAGAATAGAAACGTAATAATTCGGACAACTTCGCTCTATTCACACTATCTTCATGGATGCCCAATTTTATACTTTTTGAGAATTGCTCATAGAACTTCTTGTAGTTTTCTTTATCTTCTGCTATCTCTTCAAATAATTCAATACATTTCCTGACCAGGCTCTTA                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CD123298             [                                                                                                                                                                                                                                                                                  AATTTTATACTTTTTGAGAATTGCTCATAGAACTTCTTGTAGTTTTCTTTATCTTCTGCTATCTCTTCAAATAATTCAATACATTTCCTGACCAGGCTCTTACGGATGACCTTTAATACGTTGTTCTGTTGCAACACCTCACGACTGATGTTAAGAGGCAGGTCCTCGCTGTCGACAACTCCGCGAACGAAACTCAAGTACTCGGGAATCATATCCTCACAGGTATCCATGATGAGGACTCTTCGCACATACAATTTAATGTTGCTCCGCTTTTTCCGCGTCCCTTCAAACATATCAATTGGTGCGCGTTTAGGCACAAAAAGCAATGCACGGAACTCTAACTGACCTTCAACAGAAAAGTGCTTCACTGCAAGGTGGTCCTCCCAATCATTAGTTAACGACTTGTAAAACTCTGCATACTCTTCTGTAGTTATATCTTCGGGATTGCGCGTCCAGATGACAGTGAGATGCCGAAACGTGGCACTAAGGTGATATTACATCTGAAAGAAGACCAGC]




>consensus_7385#0
TTTCTTCTTCTCCTTATTCTCGTCCTCCTCGTCCTCATCTAGATCTTCGACCATGTACAA
CACCTCGAATCCACGTTGAGTAAGTTTCTCAGCAAATGGTGAGTTCATCACTGCTTGCTT
TGATTCACCTGTTATGTAGTAAATATCCTGCTGTTCAGGTTTCATACGTGACACATAGTC
CTTCAGGCTAATCATTTCATCACCAGAAGCTGAAGAATAGAAACGTAATAATTCGGACAA
CTTCGCTCTATTCACACTATCTTCATGGATGCCCAATTTTATACTTTTTGAGAATTGCTC
ATAGAACTTCTTGTAGTTTTCTTTATCTTCTGCTATCTCTTCAAATAATTCAATACATTT
CCTGACCAGGCTCTTACGGATGACCTTTAATACGTTGTTCTGTTGCAACACCTCACGACT
GATGTTAAGAGGCAGGTCCTCGCTGTCGACAACTCCGCGAACGAAACTCAAGTACTCGGG
AATCATATCCTCACAGGTATCCATGATGAGGACTCTTCGCACATACAATTTAATGTTGCT
CCGCTTTTTCCGCGTCCCTTCAAACATATCAATTGGTGCGCGTTTAGGCACAAAAAGCAA
TGCACGGAACTCTAACTGACCTTCAACAGAAAAGTGCTTCACTGCAAGGTGGTCCTCCCA
ATCATTAGTTAACGACTTGTAAAACTCTGCATACTCTTCTGTAGTTATATCTTCGGGATT
GCGCGTCCAGATGACAGTGAGATGCCGAAACGTGGCACTAAGGTGATATTACATCTGAAA
GAAGACCAGC

consensusID : consensus_7385#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [AAGAAAAATGAATCTATCTTGTTCACTTCTTGTCAATTTGTTCCATCTACTTTTTCATTTATCTAATTGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAAAAGTATCTATGGAATTAAAAAATCATTGATGAATTACGATCGGCTAATAACTAATGAAAAGAGTCAATTTCAAGAGAAGGTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATAAATACAGGTTAGTTGAAAAATTGTTCATTATGTAAAGCACATTCAACTGGATCATGTGATAGCTTAACTGAATATTGATAACCTCTTATCAACTTCCCTTTATTTTTTATAACATCTATCTTGATCTACACTTCTATCATTCCCAATCCACATATTGATTAACTTGAGAAAACCCTTCTCATTACGCAGTATATTCACAGAATGATATTATTTCAGTTTTCAAATGTTACTGTTGTACAGATTGTGACTGAACACGTAACTCCAAATAGTTCTGACATTAATTAAATGACAGTTCT]

[+] EMBL CD153421             [AAGAAAAATGAATCTATCTTGTTCACTTCTTGTCAATTTGTTCCATCTACTTTTTCATTTATCTAATTGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAAAAGTATCTATGGAATTAAAAAATCATTGATGAATTACGATCGGCTAATAACTAATGAAAAGAGTCAATTTCAAGAGAAGGTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTTCAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATAAATACAGGTTAGTTGAAAAATTGTTCATTATGTAAAGCACATTCAACTGGATCATGTGATAGCTTAACTGAATATTGATAACCTCTTATCAACTTCCCTTTATTTTTTATAACATCTATCTTGATCTACACTTCTATCATTCCCAATCCACATATTGATTAACTTGAGAAAACCCTTCTCATTACGCAGTATATTCACAGAATGATATTATTTCAGTTTTCAAATGTTACTGTTGTACAGATTGTGACTGAACACGTAACTCCAAATAGTTCTGACATTAATTAAATGACAGTTCT]




>consensus_7385#1
AAGAAAAATGAATCTATCTTGTTCACTTCTTGTCAATTTGTTCCATCTACTTTTTCATTT
ATCTAATTGTCATGGCATAGATCTGAAACAATTTTACCTGTCAAAAAGTATCTATGGAAT
TAAAAAATCATTGATGAATTACGATCGGCTAATAACTAATGAAAAGAGTCAATTTCAAGA
GAAGGTAGATGAAATGAACAACAGAGCTTTTAATGAAACGGCATCGATTGAAGAGTATTT
CAATTGTATTACTAGAGTATTTAAATTACAGATTATCGATGAAATAAATACAGGTTAGTT
GAAAAATTGTTCATTATGTAAAGCACATTCAACTGGATCATGTGATAGCTTAACTGAATA
TTGATAACCTCTTATCAACTTCCCTTTATTTTTTATAACATCTATCTTGATCTACACTTC
TATCATTCCCAATCCACATATTGATTAACTTGAGAAAACCCTTCTCATTACGCAGTATAT
TCACAGAATGATATTATTTCAGTTTTCAAATGTTACTGTTGTACAGATTGTGACTGAACA
CGTAACTCCAAATAGTTCTGACATTAATTAAATGACAGTTCT

consensusID : consensus_7385#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 373
fasta sequence

                              [ACTTTCACGATTGCACCAGATGACAGTGAGATGCCGAAACGTGGCACTAAGGTGATATTACATCTGAAAGAAGACCAGCTAGAATATCTTGAAGAAAGGAAGATACGAGATATAGTGAAGAAGCATTCCAGTTTTATCAACTATCCTATCAAG-CTGGTTGTAAATAAAGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAAT]

[+] EMBL CD161693             [ACTTTCACGATTGCACCAGATGACAGTGAGATGCCGAAACGTGGCACTAAGGTGATATTACATCTGAAAGAAGACCAGCTAGAATATCTTGAAGAAAGGAAGATACGAGATATAGTGAAGAAGCATTCCAGTTTTATCAACTATCCTATCAAG CTGGTTGTAAATAAAGAGCGAGCGAGTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAGTGTATTTTTGAAT]
[+] EMBL CD149020             [                                                                                                                                              gcggcgaCAAGAGTGGTTG   AT GTGAGTGAGCGAGTGTATTTTTGAGTTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGTGGCGGCGACAAGAGTGAGTGGTTGATGAGTTTCACGAGCGAAGACGGTGGTGTTGGTTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGT                                       ]




>consensus_7385#2
ACTTTCACGATTGCACCAGATGACAGTGAGATGCCGAAACGTGGCACTAAGGTGATATTA
CATCTGAAAGAAGACCAGCTAGAATATCTTGAAGAAAGGAAGATACGAGATATAGTGAAG
AAGCATTCCAGTTTTATCAACTATCCTATCAAGCTGGTTGTAAATAAAGAGCGAGCGAGT
GTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGTTTTTGTGGCGGCGGCGGT
GGCGGCGACAAGAGTGGTTGGTTGATGAGTTTCAGGAGCGAAGACGGTGGTGTTGGTTTG
GCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTGTATCGAGAGATGTGAGCGAGCGAG
TGTATTTTTGAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7385#0      TTTCTTCTTCTCCTTATTCTCGTCCTCCTCGTCCTCATCTAGATCTTCGACCATGTACAA 60
consensus_7385#2      ------------------------------------------------------------
consensus_7385#1      ------------------------------------------------------------
                                                                                  

consensus_7385#0      CACCTCGAATCCACGTTGAGTAAGTTTCTCAGCAAATGGTGAGTTCATCACTGCTTGCTT 120
consensus_7385#2      ------------------------------------------------------------
consensus_7385#1      ------------------------------------------------------------
                                                                                  

consensus_7385#0      TGATTCACCTGTTATGTAGTAAATATCCTGCTGTTCAGGTTTCATACGTGACACATAGTC 180
consensus_7385#2      --------------------------------------------------------ACTT 4
consensus_7385#1      -----------------AAGAAAAATGAATCTATCTTGTTCACTTCTTGTCAATTTGTTC 43
                                                                                * 

consensus_7385#0      CTTCAGGCTAATCATTTCATCACCAGAAGCTGAAGAATAGAA---ACGTAATAATTCGGA 237
consensus_7385#2      TCACGATTGCACCAGATGACAGTGAGATGCCGAAACGTGGCACTAAGGTGATATTACATC 64
consensus_7385#1      CATCTACTTTTTCATTT---ATCTAATTGTCATGGCATAGATCTGAAACAATTTTACCTG 100
                         *        **  *       *   *        * *     *    **  * *   

consensus_7385#0      CAACTTCGCTCT-----ATTCACACTATCTTCATGGATGCCCAATTTTATACTTTTTGAG 292
consensus_7385#2      TGAAAGAAGACC-----AGCTAGAATATCTTGAAGAAAGGAAGATACGAGATATAGTGAA 119
consensus_7385#1      TCAAAAAGTATCTATGGAATTAAAAAATCATTGATGAATTACGATCGGCTAATAACTAAT 160
                        *              *   * *  *** *     *      **     *     * * 

consensus_7385#0      AATTGCTCATAGAACTTCTTGTAGTTTTCTTTATCTTCTGCTATCTCTTCAAATAATTCA 352
consensus_7385#2      GAAGCATTCCAGTTTTATCAACTATCCTATCAAGCTGGTTGTAAATAAA-GAGCGAGCGA 178
consensus_7385#1      GAAAAGAGTCAATTTCAAGAGAAGGTAGATGAAATGAACAACAGAGCTTTTAATGA--AA 218
                       *        *                  *  *         *        *   *   *

consensus_7385#0      ATACATTTCCTGACCAGGCTCTTACGGATGACCTTTAATACGTTGTTCTG-TTGCAACAC 411
consensus_7385#2      GTGTATTTTTGAATTGGAGTGTACTGACTAGACGGGAGTATAGT-TTTTG-TGGCGGCG- 235
consensus_7385#1      CGGCATCGATTGA--AGAGTATTTCAATTG--TATTACTAGAGTATTTAAATTACAG--- 271
                          **      *   *  * *      *       * **   * **    *  *     

consensus_7385#0      CTCACGACTGATGTTAAGAG-GCAGGTCCTCGCTGTCGACAACTCCGCGA-ACGAAACTC 469
consensus_7385#2      ---GCGGTGGCGGCGACAAG-AGTGGT--TGGTTGATG--AGTTTCAGGA-GCGAAGACG 286
consensus_7385#1      ---ATTATCGATGAAATAAATACAGGT--TAGTTGAAAAATTGTTCATTATGTAAAGCAC 326
                               *  *  *  *     ***  * * **        * *   *    **    

consensus_7385#0      AAGTACTCGG-GAATCATATCCTCACAGGTATCCATGATGAGGACTCTTCG-CACATACA 527
consensus_7385#2      GTGGTGTTGG-TTTGGCGATGGAGAGAGTGGACTGTGAAGAGGTGTAGTTG-TATCGAGA 344
consensus_7385#1      ATTCAACTGGATCATGTGATAGCTTAACTGAATATTGATAACCTCTTATCAACTTCCCTT 386
                              **        **      *        ***  *    *  *           

consensus_7385#0      -ATTTAATGTTGCTCCGCTTTTTCCGCGTCCCTTCAAACATATCAATTGGTGCGC-GTTT 585
consensus_7385#2      GATGTGAGCGAGCGAGTGTATTTTTGAAT------------------------------- 373
consensus_7385#1      TATTTTTTATAACATCTATCTTGATCTACACTTCTATCATTCCCAATCCACATATTGATT 446
                       ** *       *     * **                                      

consensus_7385#0      AGGCACAAAAAGCAATGCACGGAACTCTAACTGACCTTCAACAGAAAAGTGCTTCACTGC 645
consensus_7385#2      ------------------------------------------------------------
consensus_7385#1      AACTTGAGAAAACCCTTCTCATTACGCAGTATATTCACAGAATGATATTATTTCAGTTTT 506
                                                                                  

consensus_7385#0      AAGGTGGTCCTCCCAATCATTAGTTAACGACTTGTAAAACTCTGCATACTCTTCTGTAGT 705
consensus_7385#2      ------------------------------------------------------------
consensus_7385#1      CAAATGTTACTGTTGTACAGATTGTGACTGAACACGTAACTCCAAATAG--TTCTGACAT 564
                                                                                  

consensus_7385#0      TATATCTTCGGGATTGCGCGTCCAGATGACAGTGAGATGCCGAAACGTGGCACTAAGGTG 765
consensus_7385#2      ------------------------------------------------------------
consensus_7385#1      TAATTAAATGACAGTTCT------------------------------------------ 582
                                                                                  

consensus_7385#0      ATATTACATCTGAAAGAAGACCAGC 790
consensus_7385#2      -------------------------
consensus_7385#1      -------------------------