These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7390#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 656 fasta sequence [TAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTATATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTATGTTAATTACTGGGCTATCTTGATCAAGCTGCTTTAGATGGTCTAATTCTACCAAGTTCTACAAATACTAAAAATCCAAAATTAGCCGTTCTTCATCGAAACGGTGATCTACGTATATGGGATATAAAAACAATAACATTAATTGGTTCAATTAAATTATTCGATAAAAAATATTCTTCATTATCTAATCAATATGGTAACCATTTAGAAGTTTATCAAATTAATTCACCGCAATCATTTAATGACCAATTATCTAATTCTAATCATGATTTATTATTAATTGCTGGTAATGGATTTATATGTCCGGTTTCTATTAAATTTGATGAAGAATTACATTTTAAGGTTTTAGATATCATTAAAACAGGCGATGATGGATCAGTTGAAGCATTAAACTGTTCTTGGACCATNCATTGTTTGCTTTT] [+] EMBL CD162712 [TAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTATATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAACTGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATATGAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTATGTTAATTACTGGGCTATCTTGATCAAGCTGCTTTAGATGGTCTAATTCTACCAAGTTCTACAAATACTAAAAATCCAAAATTAGCCGTTCTTCATCGAAACGGTGATCTACGTATATGGGATATAAAAACAATAACATTAATTGGTTCAATTAAATTATTCGATAAAAAATATTCTTCATTATCTAATCAATATGGTAACCATTTAGAAGTTTATCAAATTAATTCACCGCAATCATTTAATGACCAATTATCTAATTCTAATCATGATTTATTATTAATTGCTGGTAATGGATTTATATGTCCGGTTTCTATTAAATTTGATGAAGAATTACATTTTAAGGTTTTAGATATCATTAAAACAGGCGATGATGGATCAGTTGAAGCATTAAACTGTTCTTGGACCATNCATTGTTTGCTTTT] consensusID : consensus_7390#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 395 fasta sequence [CATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTGCAAACATAAAAAACTAAGCGTGCGCAACTGATCGTTAAGCTATGAGAAAATTCTAAGTGTCACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAACCCCAAAACATAACTACACTTACCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTC] [+] EMBL CD135366 [CATAGTGTCCACGACCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTGCAAACATAAAAAACTAAGCGTGCGCAACTGATCGTTAAGCTATGAGAAAATTCTAAGTGTCACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAACCCCAAAACATAACTACACTTACCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGAC ] [+] EMBL CD144441 [ AACAGCCGTCTGCAAACATAAAAAACTAAGCGTGCGCAACTGATCGTTAAGCTATGAGAAAATTCTAAGTGTCACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAACCCCAAAACATAACTACACTTACCTCGACGACCATCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGTCCGCCGCGATAACCTCCGCCTCCACCTCTACCACCACCTCTTGGGGCAGCTTGGCAATCGCGAGCATAATGACCGGGACGTCCACATTTGAAACAGTCGTCCGACATCTTAAGAATACACTAACAGACCTTACACCCTGACTC] consensusID : consensus_7390#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 368 fasta sequence [AGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGGCATGTGGATCAGGTATCCCACCTGCTCCTCGTGGTACTCCTCAGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGG] [+] EMBL CD150221 [AGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGGCATGTGGATCAGGTATCCCACCTGCTCCTCGTGGTACTCCTCAGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTACAATGG] consensusID : consensus_7390#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 217 fasta sequence [CGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACAAGCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATCTGAGGAGTACCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGG] [+] EMBL CD160255 [CGCATCGGCTACCATCCGCTCAATCTCCTCTTTCGACAAACAAGCCTTGTCATTTGTGATCGTTATCTTGTTCTGCTTCCCAGTACCCTTGTCAACAGCAGATACGTTCAGAATACCGTTCGCATCTATATCAAACGTCACCTCAATCTGAGGAGTACCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7390#0 TAGTTTCAGTCCAAATGGTGATTATTTATGTACTGGTGATATGGCTGGAAATATTCGTAT 60 consensus_7390#3 ------------------------------------------------------------ consensus_7390#1 ------------------------------------------------------------ consensus_7390#2 ------------------------------------------------------------ consensus_7390#0 ATGGTTAAGACCATTAATAGAAGAAAATTCAAAAGAATGGAAATTATTAAGAACAGAAAC 120 consensus_7390#3 ------------------------------------------------------------ consensus_7390#1 ------------------------------------------------------------ consensus_7390#2 ------------------------------------------------------------ consensus_7390#0 TGTCAATGATTTACTATGGATTAAATGGTGGGTATCACCTTCAAATGCTGTACGAAATAT 180 consensus_7390#3 ------------------------------------------------------------ consensus_7390#1 ------------------------------------------------------------ consensus_7390#2 ------------------------------------------------------------ consensus_7390#0 GAACAATGAAGTTTCAAAGCCTGCTTTACTATTAGCTGGTGATGAACATAGTTATGTTAA 240 consensus_7390#3 ------------------------------------------------------------ consensus_7390#1 ----------------------------------------------CATAGTGTCCACGA 14 consensus_7390#2 ------------------------------------------------------------ consensus_7390#0 TTACTGG-GCTATCTTGATCAAGCTGCTTTAGATGGTCTAATTCTACCAAGT--TCTACA 297 consensus_7390#3 ------------------------------------------------------------ consensus_7390#1 CCACTGGTACAATCTCGAGCATAATGATCAAGCCCACCGCAGTTGAAACAGCCGTCTGCA 74 consensus_7390#2 ------------------------------------------------------------ consensus_7390#0 AATACTAAAAATCCAAAATTAGCCGTTCTTCATCGAAACGGTGATCTACGTATATGGGAT 357 consensus_7390#3 ------------------------------------------------------------ consensus_7390#1 AACATAAAAAACTAAGCGTGCGCAACTGATCGTT-AAGCTATGAGAAAATTCTAAGTGTC 133 consensus_7390#2 -------AGATTGAGGTGACGTTTGATATAGATGCGAACGGTATTCTGAACGTATCTGCT 53 consensus_7390#0 ATAAAAACAATAACATTAATTGGTTCAATTAAATTATTCGATAAAAAATATTCTTCATTA 417 consensus_7390#3 ------------------------------------------------------------ consensus_7390#1 ACATGACTAATAACTTTAATTTACCGTCAAAAATGTGTTTACAAAACCCCAAAACATAAC 193 consensus_7390#2 GTTGACAAGGGTACTGGGAAGCAGAACAAGATAACGATCACAAATGACAAGGGTCGTTTG 113 consensus_7390#0 TCTAATCAATATGGTAACCATTTAGAAGTTTATCAAATTAATTCACCGCAATCATTTAAT 477 consensus_7390#3 -CGCATCGGC-TACCATCCGCTCAATCTCCTCTTTCGACAAACAAGCCTTGTCATTTG-T 57 consensus_7390#1 TACACTTACCTCGACGACCA-TCGTTATTGTCACGATCTCTTCCACCACCGCCGCCTCGT 252 consensus_7390#2 TCGAAAGAGGAGATTGAGCGGATGGTAGCCGATGCGGACAAGTA--CAATGGCATGTG-- 169 * * * * consensus_7390#0 GACCAATTATCTAATT--CTAATCATGATTTATTATTAATTGC--TGGTAATGGATTTAT 533 consensus_7390#3 GATCG-TTATCTTGTT--CTGCTT----CCCAGTACCC-TTGT--CAACAGCAGATACGT 107 consensus_7390#1 CCGCCGCGATAACCTC--CGCCTCCACCTCTACCACCACCTCT--TGG-GGCAGCTTGGC 307 consensus_7390#2 GATCAGGTATCCCACCTGCTCCTCGTGGTACTCCTCAGATTGAGGTGACGTTTGATATAG 229 * ** * * * * * consensus_7390#0 ATGT---CCGGTTTCTATTAAATTTGA----TGAAGAATTACATTTTAAGGTTTTAGATA 586 consensus_7390#3 ---T---CAGAATACCGTTCGCATCTA----TATCAAACGTCACCTCAATCTGAGGAGTA 157 consensus_7390#1 A-AT---CGCGAGCATAATGACCGGGA----CGTCCACATTTGAAACAGT-CGTCCGACA 358 consensus_7390#2 ATGCGAACGGTATTCTGAACGTATCTGCTGTTGACAAGGGTACTGGGAAGCAGAACAAGA 289 * * * * consensus_7390#0 TCATTAAAACAGGCGATGATGGATCAGTTGAAGCATTAAACTGTTCTTGGACCATNCATT 646 consensus_7390#3 CCACAATGGCACGTGGATCACAATGGCACGTGGATCACAATGGCACGTGGATCACA-ATG 216 consensus_7390#1 TCTTAAGAATACACTAACAGACCTTACACCCTGACTC----------------------- 395 consensus_7390#2 TAACGATCACAAATGACAAGGGTCGTTTGTCGAAAGAGGAGATTGAGCGGATGGTAGCCG 349 * * consensus_7390#0 GTTTGCTTTT--------- 656 consensus_7390#3 G------------------ 217 consensus_7390#1 ------------------- consensus_7390#2 ATGCGGACAAGTACAATGG 368 |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||