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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 891 fasta sequence
[TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCATTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCATCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTTGTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATACAACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTGCGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA]
[-] EMBL CD190106 [TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCA ]
[+] EMBL CD162094 [ CGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCCGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGCTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTC ]
[-] EMBL CD170208 [ TTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGAT ]
[+] EMBL CD153011 [ ACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCATTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCATCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTTGTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATACAACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTGCGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA]
consensusID : consensus_7393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence
[CTTATAGAATTATATACTATACAGAGCCTCCAAAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAG]
[+] EMBL CD189684 [CTTATAGAATTATATACTATACAGAGCCTCCAAAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7393#0 TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTC 60
consensus_7393#1 ------------------------------------------------------------
consensus_7393#0 GACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAA 120
consensus_7393#1 ------------------------------------------------------------
consensus_7393#0 TACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTT 180
consensus_7393#1 ------------------------------------------------------------
consensus_7393#0 CTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACA 240
consensus_7393#1 -------------------------------------CTTATAGAATTATATACTATACA 23
***********************
consensus_7393#0 GAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACA 300
consensus_7393#1 GAGCCTCCAAAAG--------------AGAGAAAAAGTCTTGGAGAGTATTCAAGAAACA 69
************* *********************************
consensus_7393#0 GAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCC 360
consensus_7393#1 GAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCC 129
************************************************************
consensus_7393#0 CAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACA 420
consensus_7393#1 CAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACA 189
************************************************************
consensus_7393#0 GAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAAC 480
consensus_7393#1 GAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAAC 249
************************************************************
consensus_7393#0 TTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACAT 540
consensus_7393#1 TTAGCATCTGAATATCTAAAAATAGTCCGTCAG--------------------------- 282
*********************************
consensus_7393#0 TTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCA 600
consensus_7393#1 ------------------------------------------------------------
consensus_7393#0 TTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCA 660
consensus_7393#1 ------------------------------------------------------------
consensus_7393#0 TCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTT 720
consensus_7393#1 ------------------------------------------------------------
consensus_7393#0 GTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATAC 780
consensus_7393#1 ------------------------------------------------------------
consensus_7393#0 AACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTG 840
consensus_7393#1 ------------------------------------------------------------
consensus_7393#0 CGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA 891
consensus_7393#1 ---------------------------------------------------
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||