These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7393#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 891 fasta sequence [TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCATTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCATCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTTGTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATACAACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTGCGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA] [-] EMBL CD190106 [TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCA ] [+] EMBL CD162094 [ CGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCCGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGCTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTC ] [-] EMBL CD170208 [ TTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGAT ] [+] EMBL CD153011 [ ACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCATTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCATCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTTGTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATACAACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTGCGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA] consensusID : consensus_7393#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [CTTATAGAATTATATACTATACAGAGCCTCCAAAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAG] [+] EMBL CD189684 [CTTATAGAATTATATACTATACAGAGCCTCCAAAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7393#0 TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTC 60 consensus_7393#1 ------------------------------------------------------------ consensus_7393#0 GACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAA 120 consensus_7393#1 ------------------------------------------------------------ consensus_7393#0 TACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTT 180 consensus_7393#1 ------------------------------------------------------------ consensus_7393#0 CTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACA 240 consensus_7393#1 -------------------------------------CTTATAGAATTATATACTATACA 23 *********************** consensus_7393#0 GAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACA 300 consensus_7393#1 GAGCCTCCAAAAG--------------AGAGAAAAAGTCTTGGAGAGTATTCAAGAAACA 69 ************* ********************************* consensus_7393#0 GAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCC 360 consensus_7393#1 GAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCC 129 ************************************************************ consensus_7393#0 CAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACA 420 consensus_7393#1 CAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACA 189 ************************************************************ consensus_7393#0 GAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAAC 480 consensus_7393#1 GAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAAC 249 ************************************************************ consensus_7393#0 TTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACAT 540 consensus_7393#1 TTAGCATCTGAATATCTAAAAATAGTCCGTCAG--------------------------- 282 ********************************* consensus_7393#0 TTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCA 600 consensus_7393#1 ------------------------------------------------------------ consensus_7393#0 TTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCA 660 consensus_7393#1 ------------------------------------------------------------ consensus_7393#0 TCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTT 720 consensus_7393#1 ------------------------------------------------------------ consensus_7393#0 GTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATAC 780 consensus_7393#1 ------------------------------------------------------------ consensus_7393#0 AACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTG 840 consensus_7393#1 ------------------------------------------------------------ consensus_7393#0 CGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA 891 consensus_7393#1 --------------------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||