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Schistosoma mansoni
cluster # 7393 cluster # 7393       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7393#0 length = 891 sequences # 4  
consensus_7393#1 length = 282 sequences # 1  

consensusID : consensus_7393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 891
fasta sequence
                              [TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCATTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCATCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTTGTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATACAACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTGCGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA]

[-] EMBL CD190106             [TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD162094             [              CGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTCGACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAATACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCCGAAGACTAAATGGGAAGTTCTTTTGGAGACGTCTATGCTTGATTATGCCGCAGATACTTATAGAATTATATACTATACAGAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTC                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD170208             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                         TTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGAT                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CD153011             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ACTTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACATTTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCATTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCATCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTTGTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATACAACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTGCGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA]


>consensus_7393#0 TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTC GACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAA TACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTT CTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACA GAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACA GAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCC CAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACA GAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAAC TTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACAT TTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCA TTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCA TCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTT GTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATAC AACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTG CGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA



consensusID : consensus_7393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence
                              [CTTATAGAATTATATACTATACAGAGCCTCCAAAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAG]

[+] EMBL CD189684             [CTTATAGAATTATATACTATACAGAGCCTCCAAAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAG]


>consensus_7393#1 CTTATAGAATTATATACTATACAGAGCCTCCAAAAGAGAGAAAAAGTCTTGGAGAGTATT CAAGAAACAGAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAG GAAGTTGCCCAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAAC TTCAAGACAGAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGA AATTACAACTTAGCATCTGAATATCTAAAAATAGTCCGTCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7393#0      TGCTTTATGAAGAGCGCCTAATACAATAGTACCGCCACCGTCAGCATAATGTCTGAATTC 60
consensus_7393#1      ------------------------------------------------------------
                                                                                  

consensus_7393#0      GACCTGACAAAGAAGATAAGTGGTTTTCTCGATAAACACTTGACTTTACCACTGCTGGAA 120
consensus_7393#1      ------------------------------------------------------------
                                                                                  

consensus_7393#0      TACATATCTGTAAAAAATATATATGATGAAAAAAGCATTCTGAAGACTAAATGGGAAGTT 180
consensus_7393#1      ------------------------------------------------------------
                                                                                  

consensus_7393#0      CTTTTGGAGACGTCTATGGTTGATTATGCCGCAGATACTTATAGAATTATATACTATACA 240
consensus_7393#1      -------------------------------------CTTATAGAATTATATACTATACA 23
                                                           ***********************

consensus_7393#0      GAGCCTCCAAAAGGCTTACTTGACAAGAGAGAAAAAGTCTTGGAGAGTATTCAAGAAACA 300
consensus_7393#1      GAGCCTCCAAAAG--------------AGAGAAAAAGTCTTGGAGAGTATTCAAGAAACA 69
                      *************              *********************************

consensus_7393#0      GAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCC 360
consensus_7393#1      GAGGTTAAGTTGAAACCAGTGAAGGTAATATTTAGTCAAGAAACAATGAAGGAAGTTGCC 129
                      ************************************************************

consensus_7393#0      CAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACA 420
consensus_7393#1      CAATGTAAAAACGCCAAAGATCTACTGGCTAGTCTGGAGACCAAATACAACTTCAAGACA 189
                      ************************************************************

consensus_7393#0      GAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAAC 480
consensus_7393#1      GAGATGCTTAACGACATGTTTGATGCTGCACGCGTATTTTATGATGCTGGAAATTACAAC 249
                      ************************************************************

consensus_7393#0      TTAGCATCTGAATATCTAAAAATAGTCCGTCAGCTCGTAACCCCTGGGACACAAAGACAT 540
consensus_7393#1      TTAGCATCTGAATATCTAAAAATAGTCCGTCAG--------------------------- 282
                      *********************************                           

consensus_7393#0      TTGGATGCCAGTTGGGGCCGCCTAGCCAGTGAAATTTTAGTTCAAAACTGGGATGAAGCA 600
consensus_7393#1      ------------------------------------------------------------
                                                                                  

consensus_7393#0      TTGGAAGATTTAGAAAAGTTGAAGGATGCTATAGATTGTCAAAACGAAGATAGACCTGCA 660
consensus_7393#1      ------------------------------------------------------------
                                                                                  

consensus_7393#0      TCTCGTACATACCTGATACAACTACAACAACGTACATGGATGTTGCATTGGTCACTTTTT 720
consensus_7393#1      ------------------------------------------------------------
                                                                                  

consensus_7393#0      GTTTTTTTTCAATCATCCACAAGGCAAAGAAAAGTTAATTGAATGGTTTATGCAAAATAC 780
consensus_7393#1      ------------------------------------------------------------
                                                                                  

consensus_7393#0      AACACATTTGAACGCCATCCAAACGTTAGCGCCACATTTATTGCGTTACCTCACTGTGTG 840
consensus_7393#1      ------------------------------------------------------------
                                                                                  

consensus_7393#0      CGTAATCACTAGTACTGATAAGAAGAAAAAGAATCTTATACGAGATTTAAA 891
consensus_7393#1      ---------------------------------------------------
                                                                         




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)