cluster # 7394

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Schistosoma mansoni
cluster # 7394 cluster # 7394 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7394#0 length = 976 sequences # 1

consensus_7394#1 length = 615 sequences # 3
consensus_7394#2 length = 277 sequences # 1

consensusID : consensus_7394#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 976
fasta sequence

                              [GAGGAGTTTATTCCTTCATTGCTTGTCTTATTAAAAATTGCTATTAATAGGAGGTTGGAAGTTTTAAGTATCCATAAACGGGAACGCACATGCACAGTTCGTTCATTCATCTATGTATACGGATAAAGATGTAGTGACGAAAGAATTCAGTAAGACTTGATATATATATATATATACTTTTGCAAATTTTAGCAACATGTATTCATAACTTGTCTTATCTCTACATTTATATAGCAGCAGTTACCCATATAGTATAATAAATAATATGTTTTCAAAATACTTCATAATAATTCGTTTTTTACTAGAAGCAAATAAATAATTTCTTTTTCTCTTCTATCTGTACAGAAACAGTTGTAAATTTTCTTTTGTTTTTTTGTATACTTGTATGTATTTTTTGTTGTTATTGTCATTTGTTAAACGTTATATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGNTGCCCACACACATACTGTGCGTAGGGATTGTGTTGAGCTTTGACATGCGTTNTTCCTCACGTAAATTTCCAGACACTATTGCTACGCAACTTGATTTNCATCCATTTNCGTAATAGTCGAATATGAGAAACCATATATTTCTCGCTATACCTAATCCGGNTCTCAACTGGATGGNGCATCTTTCCATTTTANATGGGTGGTCAGNCACCACAGCAAGNAGTTAGTTTTTATTGCCTGACATGTATTCGCATTCGTATGCAGTCATAAAAC]

[+] EMBL CD081869             [GAGGAGTTTATTCCTTCATTGCTTGTCTTATTAAAAATTGCTATTAATAGGAGGTTGGAAGTTTTAAGTATCCATAAACGGGAACGCACATGCACAGTTCGTTCATTCATCTATGTATACGGATAAAGATGTAGTGACGAAAGAATTCAGTAAGACTTGATATATATATATATATACTTTTGCAAATTTTAGCAACATGTATTCATAACTTGTCTTATCTCTACATTTATATAGCAGCAGTTACCCATATAGTATAATAAATAATATGTTTTCAAAATACTTCATAATAATTCGTTTTTTACTAGAAGCAAATAAATAATTTCTTTTTCTCTTCTATCTGTACAGAAACAGTTGTAAATTTTCTTTTGTTTTTTTGTATACTTGTATGTATTTTTTGTTGTTATTGTCATTTGTTAAACGTTATATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGNTGCCCACACACATACTGTGCGTAGGGATTGTGTTGAGCTTTGACATGCGTTNTTCCTCACGTAAATTTCCAGACACTATTGCTACGCAACTTGATTTNCATCCATTTNCGTAATAGTCGAATATGAGAAACCATATATTTCTCGCTATACCTAATCCGGNTCTCAACTGGATGGNGCATCTTTCCATTTTANATGGGTGGTCAGNCACCACAGCAAGNAGTTAGTTTTTATTGCCTGACATGTATTCGCATTCGTATGCAGTCATAAAAC]




>consensus_7394#0
GAGGAGTTTATTCCTTCATTGCTTGTCTTATTAAAAATTGCTATTAATAGGAGGTTGGAA
GTTTTAAGTATCCATAAACGGGAACGCACATGCACAGTTCGTTCATTCATCTATGTATAC
GGATAAAGATGTAGTGACGAAAGAATTCAGTAAGACTTGATATATATATATATATACTTT
TGCAAATTTTAGCAACATGTATTCATAACTTGTCTTATCTCTACATTTATATAGCAGCAG
TTACCCATATAGTATAATAAATAATATGTTTTCAAAATACTTCATAATAATTCGTTTTTT
ACTAGAAGCAAATAAATAATTTCTTTTTCTCTTCTATCTGTACAGAAACAGTTGTAAATT
TTCTTTTGTTTTTTTGTATACTTGTATGTATTTTTTGTTGTTATTGTCATTTGTTAAACG
TTATATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAA
ATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATCT
TACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCT
CATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTT
CACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGNTGCCCACACACATA
CTGTGCGTAGGGATTGTGTTGAGCTTTGACATGCGTTNTTCCTCACGTAAATTTCCAGAC
ACTATTGCTACGCAACTTGATTTNCATCCATTTNCGTAATAGTCGAATATGAGAAACCAT
ATATTTCTCGCTATACCTAATCCGGNTCTCAACTGGATGGNGCATCTTTCCATTTTANAT
GGGTGGTCAGNCACCACAGCAAGNAGTTAGTTTTTATTGCCTGACATGTATTCGCATTCG
TATGCAGTCATAAAAC

consensusID : consensus_7394#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 615
fasta sequence

                              [TAAACGTACTATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTC-AAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGTTGCCCACACACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTTTCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATATGAGAAACCAATATTATTTCTTCGCTATTACTTATTTCTGTTTCTTCATACTGTAATGTGCATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCACCAGCAAAGTAAGTTTAGTTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTTAAAATACTAAGTGTT]

[-] EMBL CD074170             [TAAACGTACTATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTGATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCTAAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGTTGCCCACACACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTTTCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATATGAGAAACCAATATTATTTCTTCGCTATTACTTATTTCTGTTTCTTCATACTGTAATGTGCATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCACCAGCAAAGTAAGTTTAGTTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTTAAAATACTAAGTGTT]
[-] EMBL CD075581             [                                                                   TGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTC AAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTTTAAGGATTTATTTTGTTGCCCACACACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTTTCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATATGAGAAACCAATATTATTTTTTCGCTATTACTTATTTCTGTTTTTTCATACTGTAATGTGCATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCCCCAGCAAAGTAAGTTTAGTTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTTAAAATACTAAGT   ]
[+] EMBL SMAA69206            [                                                                     ATTGAGAACAATCGGAATTTTTAAAAATTCCTATTTC AAATTGTTAAGGTGATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCATTATTTCACCAATTGTAAGTCTCA                                                                                                                                                                                                                                                                                                                                                               ]




>consensus_7394#1
TAAACGTACTATTTTATCCTAAAGTAAATTGCTTTTTGAATCTAATGGTAGTCTACTCTG
ATATAAATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTG
ATATCTTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTC
AAGTCTCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTCATACAACTATTGTCA
TTATTTCACCAATTGTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGTTGCCCACA
CACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTT
TCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATAT
GAGAAACCAATATTATTTCTTCGCTATTACTTATTTCTGTTTCTTCATACTGTAATGTGC
ATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCACCAGCAAAGTAAGTTTAG
TTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTT
AAAATACTAAGTGTT

consensusID : consensus_7394#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence

                              [TATATTTTATCCTAAAGTAAATTGCTTTTNGNTTTNTNATGGTAGCCTACTCTNATATAAATGATCGGGAACAATCGGNATTTTTAAAANTCCCTATCTCAAATTGTTAAGGTGATATCTNACTGTGTCCTCAATATAAAATAGGTTGCAGTCTAGATACATCTNCTTCGCTCCANGTCTCATNAANTTCGTGATTATTTAATTATATTANGTGCNTCCCACACAACTATTGNCCATTATNTTCACCNAATCGNTNAGCNCTCAAAANNTGTTTNCC]

[+] EMBL SM377                [TATATTTTATCCTAAAGTAAATTGCTTTTNGNTTTNTNATGGTAGCCTACTCTNATATAAATGATCGGGAACAATCGGNATTTTTAAAANTCCCTATCTCAAATTGTTAAGGTGATATCTNACTGTGTCCTCAATATAAAATAGGTTGCAGTCTAGATACATCTNCTTCGCTCCANGTCTCATNAANTTCGTGATTATTTAATTATATTANGTGCNTCCCACACAACTATTGNCCATTATNTTCACCNAATCGNTNAGCNCTCAAAANNTGTTTNCC]




>consensus_7394#2
TATATTTTATCCTAAAGTAAATTGCTTTTNGNTTTNTNATGGTAGCCTACTCTNATATAA
ATGATCGGGAACAATCGGNATTTTTAAAANTCCCTATCTCAAATTGTTAAGGTGATATCT
NACTGTGTCCTCAATATAAAATAGGTTGCAGTCTAGATACATCTNCTTCGCTCCANGTCT
CATNAANTTCGTGATTATTTAATTATATTANGTGCNTCCCACACAACTATTGNCCATTAT
NTTCACCNAATCGNTNAGCNCTCAAAANNTGTTTNCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7394#0      GAGGAGTTTATTCCTTCATTGCTTGTCTTATTAAAAATTGCTATTAATAGGAGGTTGGAA 60
consensus_7394#1      ------------------------------------------------------------
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      GTTTTAAGTATCCATAAACGGGAACGCACATGCACAGTTCGTTCATTCATCTATGTATAC 120
consensus_7394#1      ------------------------------------------------------------
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      GGATAAAGATGTAGTGACGAAAGAATTCAGTAAGACTTGATATATATATATATATACTTT 180
consensus_7394#1      ------------------------------------------------------------
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      TGCAAATTTTAGCAACATGTATTCATAACTTGTCTTATCTCTACATTTATATAGCAGCAG 240
consensus_7394#1      ------------------------------------------------------------
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      TTACCCATATAGTATAATAAATAATATGTTTTCAAAATACTTCATAATAATTCGTTTTTT 300
consensus_7394#1      ------------------------------------------------------------
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      ACTAGAAGCAAATAAATAATTTCTTTTTCTCTTCTATCTGTACAGAAACAGTTGTAAATT 360
consensus_7394#1      ------------------------------------------------------------
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      TTCTTTTGTTTTTTTGTATACTTGTATGTATTTTTTGTTGTTATTGTCATTTGTTAAACG 420
consensus_7394#1      ------------------------------------------------------TAAACG 6
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      TTATATTTTATCCTAAAGTAAATTGCTTTTTGAAT-CTAATGGTAGTCTACTCTGATATA 479
consensus_7394#1      TACTATTTTATCCTAAAGTAAATTGCTTTTTGAAT-CTAATGGTAGTCTACTCTGATATA 65
consensus_7394#2      -TATATTTTATCCTAAAGTAAATTGCTTTTNGNTTTNTNATGGTAGCCTACTCTNATATA 59
                         *************************** *  *  * ******* ******* *****

consensus_7394#0      AATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATC 539
consensus_7394#1      AATGATTGTGAACAATCGGAATTTTTAAAAATCCCTATTTCAAATTGTTAAGGTGATATC 125
consensus_7394#2      AATGATCGGGAACAATCGGNATTTTTAAAANTCCCTATCTCAAATTGTTAAGGTGATATC 119
                      ****** * ********** ********** ******* *********************

consensus_7394#0      TTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTC 599
consensus_7394#1      TTACTGTGTTCTCAATATAAAATAGGTTGCAGTCTAGATACATTTTCTTCGTTTCAAGTC 185
consensus_7394#2      TNACTGTGTCCTCAATATAAAATAGGTTGCAGTCTAGATACATCTNCTTCGCTCCANGTC 179
                      * ******* ********************************* * ***** * ** ***

consensus_7394#0      TCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTC-ATACAACTATTGTC-ATTA 657
consensus_7394#1      TCATTAAATTCGTGATTATTTAAATATATTAAGTGCTTTC-ATACAACTATTGTC-ATTA 243
consensus_7394#2      TCATNAANTTCGTGATTATTTAATTATATTANGTGCNTCCCACACAACTATTGNCCATTA 239
                      **** ** *************** ******* **** * * * ********** * ****

consensus_7394#0      TTT-CACCAATT--GTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGNTGCCCACA 714
consensus_7394#1      TTT-CACCAATT--GTAAGTCTCAAAAATGTTTTTCTAAGGATTTATTTTGTTGCCCACA 300
consensus_7394#2      TNTTCACCNAATCGNTNAGCNCTCAAAANNTGTTTNCC---------------------- 277
                      * * **** * *   * **     ****  * ***                         

consensus_7394#0      CACATACTGTGCGTAGGGATTGTGTTGAGCTTTGACATGCGTTNTTCCTCACGTAAATTT 774
consensus_7394#1      CACATACTGTGCGTAGGATTTGTGTTGAGCTTGACCATGCGTTTTTCCTCACGTAAATTT 360
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      -CCAGACACTATTGCTACGCAACTTGATTTNCA-TCCATTTNCGTAA-TAGTCGA-ATAT 830
consensus_7394#1      TCCAGACACTATTGCTACGCAACTTGATTTCCAATCCATTTCCGTAAATAGTCGATATAT 420
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      GAGAAACCA-TAT-ATTTCT-CGCTAT-ACCTAATCCGGNTC--TCA-ACTGGATGGNGC 883
consensus_7394#1      GAGAAACCAATATTATTTCTTCGCTATTACTTATTTCTGTTTCTTCATACTGTAATGTGC 480
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      ATCTTT---CCATTTTAN--ATGGGTGGT-------CAGNCACCACAGCAAGNAGTTAGT 931
consensus_7394#1      ATTCTTTTCCCATTTTTATCATGGTTGGTTCCAGTACAACCACCAGCAAAGTAAGTTTAG 540
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      TTTTATTGCCTGACA-TGTATTCGCA---TTCGTA-TGCAGTCATAAAAC---------- 976
consensus_7394#1      TTTTTTTATATGGCACTGTACATGTACATTTCGCAATTTCGTTATTGCACAAGTTCATTT 600
consensus_7394#2      ------------------------------------------------------------
                                                                                  

consensus_7394#0      ---------------
consensus_7394#1      AAAATACTAAGTGTT 615
consensus_7394#2      ---------------