cluster # 7395

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Schistosoma mansoni
cluster # 7395 cluster # 7395 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7395#0 length = 719 sequences # 3

consensus_7395#1 length = 362 sequences # 1
consensus_7395#2 length = 253 sequences # 1

consensusID : consensus_7395#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 719
fasta sequence

                              [CCGCGATTGACGACAGATAATGGAATCGAGTGCGCACTGAAAATTAGGACGGTGTTCGCACGCTCTGTTTCATCCTCAATACTCTGGAGCTCATCACGAATTTTACTGGCAAAACTGTTAATTAGCGGGGGGAAAACAGGCCATCTGTCAATAAAGGACCAGATCGGCCCAGGTCTATTGTTCTGTACGGAAGGAAGCTCAATACTTTCCACCCCATTGAAATTTTTTTCTTCACTTTCGTAATGACGAACAACGGTATTTAAGCTGCTTCCCGAAGTAGTACAGCTGTATTGTGGATACTGACTAAAAGCAACAACACGCTCTACGCCGTCTCTTTCTATTTCATTAACACAAGATTCTACAAGAGGATGGACATAACGAAATGCAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTAATAGCATCTAAGTGTTTTATCATCATTTCACCCTGTACTTTGGTCCAATATAGAATTGGAGACCCACCACCAATATGAGAATACTGTTTCTCGATCTTAGGCGACCTTCTCCATGCTACGAAACGAGCTAAAAGATCTTGGAACGGCATACGGATAATTTCTTTGTCAGAGAATAGACGTGTTAAAAAATTTTGTACTTCCTTTGTAGTTTCCGGGCCACCCATGTTTAGCAACATTATGCCAGTTTTCGCTTTTTGCGAGCATTGTCGGATTATGTCA-ACAGCAACGATTACCAAAGT]

[+] EMBL CD095931             [CCGCGATTGACGACAGATAATGGAATCGAGTGCGCACTGAAAATTAGGACGGTGTTCGCACGCTCTGTTTCATCCTCAATACTCTGGAGCTCATCACGAATTTTACTGGCAAAACTGTTAATTAGCGGGGGGAAAACAGGCCATCTGTCAATAAAGGACCAGATCGGCCCAGGTCTATTGTTCTGTACGGAAGGAAGCTCAATACTTTCCACCCCATTGAAATTTTTTTCTTCACTTTCGTAATGACGAACAACGGTATTTAAGCTGCTTCCCGAAGTAGTACAGCTGTATTGTGGATACTGACTAAAAGCAACAACACGCTCTACGCCGTCTCTTTCTATTTCATTAACACAAGATTCTACAAGAGGATGGACATAACGAAATGCAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTAATAGCATCTAAGTGTTTCATCATCATTTCACCCTGTACTTTGGTCCAATATAGAATTGGAGACCCACCACCAATATGAGAATACTGTTTCTCGATC                                                                                                                                                                                                            ]
[-] EMBL CD135452             [                                                                                                                                                                                                                                                                                                                                                                                              ATGCAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTAATAGCATCTAAGTGTTTTATCATCATTTCACCCTGTACTTTGGTCCAATATAGAATTGGAGACCCACCACCAATATGAGAATACTGTTTCTCGATCTTAGGCGACCTTCTCCATGCTACGAAACGAGCTAAAAGATCTTGGAACGGCATACGGATAATTTCTTTGTCAGAGAATAGACGTGTTAAAAAATTTTGTACTTCCTTTGTAGTTTCCGGGCCACCCATGTTTAGCAACATTATGCCAGTTTTCGCTTTTTGCGAGCATTGTCGGATTATGTCA ACAGCA              ]
[+] EMBL CD154671             [                                                                                                                                                                                                                                                                                                                                                                                                 CAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTAATAGCATCTAAGTGTTTTATCATCATTTCACCCTGTACTTTGGTCCAATATAGAATTGGAGACCCACCACCAATATGAGAATACTGTTTCTCGATCTTAGGCGACCTTCTCCATGCTACGAAACGAGCTAAAAGATCTTGGAACGGCATACGGATAATTTCTTTGTCAGAGAATAGACGTGTTAAAAAATTTTGTACTTCCTTTGTAGTTTCCGGGCCACCCATGTTTAGCAACATTATGCCAGTTTTCGCTTTTTGCGAGCATTGTC GATTATG CACACAGTAACGATTACCAAAGT]




>consensus_7395#0
CCGCGATTGACGACAGATAATGGAATCGAGTGCGCACTGAAAATTAGGACGGTGTTCGCA
CGCTCTGTTTCATCCTCAATACTCTGGAGCTCATCACGAATTTTACTGGCAAAACTGTTA
ATTAGCGGGGGGAAAACAGGCCATCTGTCAATAAAGGACCAGATCGGCCCAGGTCTATTG
TTCTGTACGGAAGGAAGCTCAATACTTTCCACCCCATTGAAATTTTTTTCTTCACTTTCG
TAATGACGAACAACGGTATTTAAGCTGCTTCCCGAAGTAGTACAGCTGTATTGTGGATAC
TGACTAAAAGCAACAACACGCTCTACGCCGTCTCTTTCTATTTCATTAACACAAGATTCT
ACAAGAGGATGGACATAACGAAATGCAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTA
ATAGCATCTAAGTGTTTTATCATCATTTCACCCTGTACTTTGGTCCAATATAGAATTGGA
GACCCACCACCAATATGAGAATACTGTTTCTCGATCTTAGGCGACCTTCTCCATGCTACG
AAACGAGCTAAAAGATCTTGGAACGGCATACGGATAATTTCTTTGTCAGAGAATAGACGT
GTTAAAAAATTTTGTACTTCCTTTGTAGTTTCCGGGCCACCCATGTTTAGCAACATTATG
CCAGTTTTCGCTTTTTGCGAGCATTGTCGGATTATGTCAACAGCAACGATTACCAAAGT

consensusID : consensus_7395#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 362
fasta sequence

                              [CAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTAATAGCATCTAAGTGTTTTATCATCATTTCACCCTGTACTTTGGTCCAATATAGAATTGGAGACCCACCACCAATATGAGAATACTGTTTCTCGATCTTAGGCGACCTTCTCCATGCTACGAAACGAGCTAAAAGACTAGATTGTAACAAAATATTCTCAAATACTCTTGGAACGGCATACGGATAATTTCTTTGTCAGAGAATAGACGTGTTAAAAAATTTTGTACTTCCTTTGTAGTTTCCGGGCCACCCATGTTTAGCAACATTATGCCAGTTTTCGCTTTTTGCGAGCATTGTCGATTATGCACACAGTAACGATTACCAAAGT]

[+] EMBL CD135526             [CAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTAATAGCATCTAAGTGTTTTATCATCATTTCACCCTGTACTTTGGTCCAATATAGAATTGGAGACCCACCACCAATATGAGAATACTGTTTCTCGATCTTAGGCGACCTTCTCCATGCTACGAAACGAGCTAAAAGACTAGATTGTAACAAAATATTCTCAAATACTCTTGGAACGGCATACGGATAATTTCTTTGTCAGAGAATAGACGTGTTAAAAAATTTTGTACTTCCTTTGTAGTTTCCGGGCCACCCATGTTTAGCAACATTATGCCAGTTTTCGCTTTTTGCGAGCATTGTCGATTATGCACACAGTAACGATTACCAAAGT]




>consensus_7395#1
CAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTAATAGCATCTAAGTGTTTTATCATCA
TTTCACCCTGTACTTTGGTCCAATATAGAATTGGAGACCCACCACCAATATGAGAATACT
GTTTCTCGATCTTAGGCGACCTTCTCCATGCTACGAAACGAGCTAAAAGACTAGATTGTA
ACAAAATATTCTCAAATACTCTTGGAACGGCATACGGATAATTTCTTTGTCAGAGAATAG
ACGTGTTAAAAAATTTTGTACTTCCTTTGTAGTTTCCGGGCCACCCATGTTTAGCAACAT
TATGCCAGTTTTCGCTTTTTGCGAGCATTGTCGATTATGCACACAGTAACGATTACCAAA
GT

consensusID : consensus_7395#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 253
fasta sequence

                              [AGCGCGCTGTACGCCGTCTTTACAGTGAAGTAAAATAAGTCAAATAAAAACACCTTTGTATTTCATTAACACAAGATTCTACAAGAGGATGGACATAACGAAATGCAACGTAGAATCTATGAGGAGCTGTTTCTGTACGGAAGGAAGCTCAATACGAATTTTACTGGCAAAACTGTTAATTAGCGGGGGGAAAACAGGCCATCTGTCAATAAAGGACCAGATCGGCCCAGGTCTATTGTTCTGTACGGAAGGA]

[-] EMBL CD178975             [AGCGCGCTGTACGCCGTCTTTACAGTGAAGTAAAATAAGTCAAATAAAAACACCTTTGTATTTCATTAACACAAGATTCTACAAGAGGATGGACATAACGAAATGCAACGTAGAATCTATGAGGAGCTGTTTCTGTACGGAAGGAAGCTCAATACGAATTTTACTGGCAAAACTGTTAATTAGCGGGGGGAAAACAGGCCATCTGTCAATAAAGGACCAGATCGGCCCAGGTCTATTGTTCTGTACGGAAGGA]




>consensus_7395#2
AGCGCGCTGTACGCCGTCTTTACAGTGAAGTAAAATAAGTCAAATAAAAACACCTTTGTA
TTTCATTAACACAAGATTCTACAAGAGGATGGACATAACGAAATGCAACGTAGAATCTAT
GAGGAGCTGTTTCTGTACGGAAGGAAGCTCAATACGAATTTTACTGGCAAAACTGTTAAT
TAGCGGGGGGAAAACAGGCCATCTGTCAATAAAGGACCAGATCGGCCCAGGTCTATTGTT
CTGTACGGAAGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7395#0      CCGCGATTGACGACAGATAATGGAATCGAGTGCGCACTGAAAATTAGGACGGTGTTCGCA 60
consensus_7395#1      ------------------------------------------------------------
consensus_7395#2      ------------------------------------------------------------
                                                                                  

consensus_7395#0      CGCTCTGTTTCATCCTCAATACTCTGGAGCTCATCACGAATTTTACTGGCAAAACTGTTA 120
consensus_7395#1      ------------------------------------------------------------
consensus_7395#2      ------------------------------------------------------------
                                                                                  

consensus_7395#0      ATTAGCGGGGGGAAAACAGGCCATCTGTCAATAAAGGACCAGATCGGCCCAGGTCTATTG 180
consensus_7395#1      ------------------------------------------------------------
consensus_7395#2      ------------------------------------------------------------
                                                                                  

consensus_7395#0      TTCTGTACGGAAGGAAGCTCAATACTTTCCACCCCATTGAAATTTTTTTCTTCACTTTCG 240
consensus_7395#1      ------------------------------------------------------------
consensus_7395#2      ------------------------------------------------------------
                                                                                  

consensus_7395#0      TAATGACGAACAACGGTATTTAAGCTGCTTCCCGAAGTAGTACAGCTGTATTGTGGATAC 300
consensus_7395#1      ------------------------------------------------------------
consensus_7395#2      ------------------------------------------------------------
                                                                                  

consensus_7395#0      TGACTAAAAGCAACAACACGCTCTACGCCGTCTCTTTCTATTTCATTAACACAAGATTCT 360
consensus_7395#1      ------------------------------------------------------------
consensus_7395#2      ------------------------------------------------------------
                                                                                  

consensus_7395#0      ACAAGAGGATGGACATAACGAAATGCAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTA 420
consensus_7395#1      -------------------------CAACGTAGAATCTATGAGGAGCTGTTTCTGGGCTA 35
consensus_7395#2      --------------AGCGCGCTGTACGCCGTCTTTACAGTGAAGTAAAATAAGTCAAATA 46
                                               *  ***     *  *** *     *   *    **

consensus_7395#0      ATAGCATCTAAGTGTTTTATCATCATTTCACCCTGTACTTTGGTCCA-ATATAGAATTGG 479
consensus_7395#1      ATAGCATCTAAGTGTTTTATCATCATTTCACCCTGTACTTTGGTCCA-ATATAGAATTGG 94
consensus_7395#2      AAAACACCTTTGTATTTCATTAACACAAGATTCTACAAGAGGATGGACATAACGAAATGC 106
                      * * ** **  ** *** ** * **    *  **  *    * *  * ***  *** ** 

consensus_7395#0      AGACCCACCACCAATATGAGAATACTGTTTCTCGATCTTAGGCGACCTTCTCCATGCTAC 539
consensus_7395#1      AGACCCACCACCAATATGAGAATACTGTTTCTCGATCTTAGGCGACCTTCTCCATGCTAC 154
consensus_7395#2      A-ACGTAGAATC--TATGAGGA-GCTGTTTCTGTACGGAAGGAAGCTCAATACGAATTTT 162
                      * **  *  * *  ****** *  ********  *    ***   *    * *    *  

consensus_7395#0      GAAACGAGCTAAAAGA-----------------------------TCTTGGAACGGCATA 570
consensus_7395#1      GAAACGAGCTAAAAGACTAGATTGTAACAAAATATTCTCAAATACTCTTGGAACGGCATA 214
consensus_7395#2      ---ACTGGCAAAACTGTTAA-------------------------TTAGCGGGGGGAAAA 194
                         **  ** ***                                *    *   ** * *

consensus_7395#0      CGGATAATTTCTTTGTCAGAGAATAGACGTGTTAAAAAATTTTGTACTTCCTTTGTAGTT 630
consensus_7395#1      CGGATAATTTCTTTGTCAGAGAATAGACGTGTTAAAAAATTTTGTACTTCCTTTGTAGTT 274
consensus_7395#2      CAGGCCATCTGTCAATAAAGGACCAGATCGGCCCAGGTCTATTGTTCTGTACGGAAGGA- 253
                      * *   ** * *   * *  **  ***   *   *    * **** **         *  

consensus_7395#0      TCCGGGCCACCCATGTTTAGCAACATTATGCCAGTTTTCGCTTTTTGCGAGCATTGTCGG 690
consensus_7395#1      TCCGGGCCACCCATGTTTAGCAACATTATGCCAGTTTTCGCTTTTTGCGAGCATTGTCG- 333
consensus_7395#2      ------------------------------------------------------------
                                                                                  

consensus_7395#0      ATTATGTCAACAGCAACGATTACCAAAGT 719
consensus_7395#1      ATTATGCACACAGTAACGATTACCAAAGT 362
consensus_7395#2      -----------------------------