cluster # 7398

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Schistosoma mansoni
cluster # 7398 cluster # 7398 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7398#0 length = 704 sequences # 2

consensus_7398#1 length = 450 sequences # 1
consensus_7398#2 length = 351 sequences # 2

consensusID : consensus_7398#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 704
fasta sequence

                              [AANATTCGGCACGAGGACTATTTTTATATCCCCTTGAAACTCCCATTGATAATGCTTCATTGGGTGTCGAGGATAACTCATCCAAAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATGCTATAGTAAATAATAAACAAAAACTAAGCATCAAAGATGGTTCTTTCTTGAGCAGCGTTTTAGAGGATTTCGAAAATAAGACACCCGCTGAACGTGGAGTTATCGTGGAGAGTAAAGAAATTTCCGCGTTGCATGAAAAGTCAGCACTAGAAGGTCAAACAGAAGCACCAAACGCTGAGTCAAAAACTAATTTGCACTTTGTATGTTTTGTTGAGCATTACGGATCTCTATATGAACTCGATGGTCGAAAAAATGCACCCATTCTCCATGGATCGATAACATCAGCTGGTTTTCTGAGAGATGCATGCAATGTAGTCAAAAAGTTCATCACTTGTTTACCTGGAAGTGTAGAATTCAGTTTGATGGGGTTATGCTCTGATAATAACTGACTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATTTTTGTGTTTTTTACACTATTTGTATATCCCCGTTTCAACTATTTGTAACACATCACTTAACTGCATTTTCTGATTTACATTACTATTTGG-TTTTGTACGATTTCTAT-ATTAAAAACAAAT]

[+] EMBL CD083173             [AANATTCGGCACGAGGACTATTTTTATATCCCCTTGAAACTCCCATTGATAATGCTTCATTGGGTGTCGAGGATAACTCATCCAAAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATGCTATAGTAAATAATAAACAAAAACTAAGCATCAAAGATGGTTCTTTCTTGAGCAGCGTTTTAGAGGATTTCGAAAATAAGACACCCGCTGAACGTGGAGTTATCGTGGAGAGTAAAGAAATTTCCGCGTTGCATGAAAAGTCAGCACTAGAAGGTCAAACAGAAGCACCAAACGCTGAGTCAAAAACTAATTTGCACTTTGTATGTTTTGTTGAGCATTACGGATCTCTATATGAACTCGATGGTCGAAAAAATGCACCCATTCTCCATGGATCGATAACATCAGCTGGTTTTCTGAGAGATGCATGCAATGTAGTCAAAAAGTTCATCACTTGTTTACCTGGAAGTGTAGAATTCAGTTTGATGGGGTTATGCTCTGATAATAACTGACTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATTTTTGTGTTTTTTACACTATTTGTATATCCCCGTTTCAACTATTTGTAACACATCACTTAACTGCATTTTCTGATTTACATTACTATTTGG TTTTGTACGATTTCTAT ATTAAAAACAAAT]
[-] EMBL CD076746             [                                                                                                                                                                                                                                ACACCCGCTGAACGTGGAGTTATCGTGGAGAGTAAAGAAATTTCCGCGTTGCATGAAAAGTCAGCACTAGAAGGTCAAACAGAAGCACCAAACGCTGAGTCAAAAACTAATTTGCACTTTGTATGTTTTGTTGAGCATTACGGATCTCTATATGAACTCGATGGTCGAAAAAATGCACCCATTCTCCATGGATCGATAACATCAGCTGGTTTTTTGAGAGATGCATGCAATGTAGTCAAAAAGTTCATCACTTGTTTACCTGGAAGTGTAGAATTCAGTTTGATGGGGTTATGCTCTGATAATAACTGACTATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAAATTTTTGTGTTTTTTACACTATTTGTATATCCCCGTTTCAACTATTTGTAACACATCACTTAACTGCATTTTCTGATTTACATTACTATTTGGTTTTTGTACGATTTCTATAATTAAAAACAAAT]




>consensus_7398#0
AANATTCGGCACGAGGACTATTTTTATATCCCCTTGAAACTCCCATTGATAATGCTTCAT
TGGGTGTCGAGGATAACTCATCCAAAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTT
GTGGAACTATAGCTTTATTACATGCTATAGTAAATAATAAACAAAAACTAAGCATCAAAG
ATGGTTCTTTCTTGAGCAGCGTTTTAGAGGATTTCGAAAATAAGACACCCGCTGAACGTG
GAGTTATCGTGGAGAGTAAAGAAATTTCCGCGTTGCATGAAAAGTCAGCACTAGAAGGTC
AAACAGAAGCACCAAACGCTGAGTCAAAAACTAATTTGCACTTTGTATGTTTTGTTGAGC
ATTACGGATCTCTATATGAACTCGATGGTCGAAAAAATGCACCCATTCTCCATGGATCGA
TAACATCAGCTGGTTTTCTGAGAGATGCATGCAATGTAGTCAAAAAGTTCATCACTTGTT
TACCTGGAAGTGTAGAATTCAGTTTGATGGGGTTATGCTCTGATAATAACTGACTATAAT
AATAATAATAATAATAATAATAATAATAATAATAATAATAAATTTTTGTGTTTTTTACAC
TATTTGTATATCCCCGTTTCAACTATTTGTAACACATCACTTAACTGCATTTTCTGATTT
ACATTACTATTTGGTTTTGTACGATTTCTATATTAAAAACAAAT

consensusID : consensus_7398#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 450
fasta sequence

                              [AGAGTTTTAAAGAAACAATTATTATGAGGTGGATCCCTTTAGAAGCTAATCCTCAGGTGCTAAATGAATATATGAATAAACTTGGAGTTGTCGAAGAGTCATGGAAATTTATAGACATTTTTAGTTTGGATGATGATATGCTTGCATTTGTACCAGAACCCGTGATAAGCCTATTATTTTTATATCCCCTTGAAACTCCCATTGAAAATGCTTCATTGGGTGTCGAGGATAACTCATCCAAAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATGCTATAGTAAATAATACACAAAAACTAAGCATAAGTATGGTTCTTTCTTGAGCAGCGTTTTAGAGGATTTCGAANATAAGACACCCGCTGAACGTGGAGTTATCGTGGAGAGTAAAAAGGANATTTCCGCGTTGCATGAAAAGTCAGCACT]

[+] EMBL CD080006             [AGAGTTTTAAAGAAACAATTATTATGAGGTGGATCCCTTTAGAAGCTAATCCTCAGGTGCTAAATGAATATATGAATAAACTTGGAGTTGTCGAAGAGTCATGGAAATTTATAGACATTTTTAGTTTGGATGATGATATGCTTGCATTTGTACCAGAACCCGTGATAAGCCTATTATTTTTATATCCCCTTGAAACTCCCATTGAAAATGCTTCATTGGGTGTCGAGGATAACTCATCCAAAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATGCTATAGTAAATAATACACAAAAACTAAGCATAAGTATGGTTCTTTCTTGAGCAGCGTTTTAGAGGATTTCGAANATAAGACACCCGCTGAACGTGGAGTTATCGTGGAGAGTAAAAAGGANATTTCCGCGTTGCATGAAAAGTCAGCACT]




>consensus_7398#1
AGAGTTTTAAAGAAACAATTATTATGAGGTGGATCCCTTTAGAAGCTAATCCTCAGGTGC
TAAATGAATATATGAATAAACTTGGAGTTGTCGAAGAGTCATGGAAATTTATAGACATTT
TTAGTTTGGATGATGATATGCTTGCATTTGTACCAGAACCCGTGATAAGCCTATTATTTT
TATATCCCCTTGAAACTCCCATTGAAAATGCTTCATTGGGTGTCGAGGATAACTCATCCA
AAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATG
CTATAGTAAATAATACACAAAAACTAAGCATAAGTATGGTTCTTTCTTGAGCAGCGTTTT
AGAGGATTTCGAANATAAGACACCCGCTGAACGTGGAGTTATCGTGGAGAGTAAAAAGGA
NATTTCCGCGTTGCATGAAAAGTCAGCACT

consensusID : consensus_7398#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 351
fasta sequence

                              [ATACAATAATTTTCTAACATAATAGTATATGAATAAACTTGGAGTTGTCGAAGAGTCATGGAAATTTATAGACATTTTTAGTTTGGATGATGATATGCTTGCATTTGTACCAGAACCCGTGATAAGCCTATTATTTTTATATCCCCTTGAAACTCCCATTGAAAATGCTTCATTGGGTGTCGAGGATAACTCATCCAAAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATGCTATAGTAAATAATAAACAAAAACTAAGCATCAAAGATGGTTCTTTCTTGAGCAGCGTTTTAGAGGATTTCGAAAATAAGACACCCGCTGAACG]

[-] EMBL CD200286             [ATACAATAATTTTCTAACATAATAGTATATGAATAAACTTGGAGTTGTCGAAGAGTCATGGAAATTTATAGACATTTTTAGTTTGGATGATGATATGCTTGCATTTGTACCAGAACCCGTGATAAGCCTATTATTTTTATATCCCCTTGAAACTCCCATTGAAAATGCTTCATTGGGTGTCGAGGATAACTCATCCAAAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATGCTATAGTAAATAATAAACAAAAACTAAGCATCAAAGATGGTTCTTTCTTGAGCAGCGTTTTAGAGGATTTCGAAAATAAGACACCCGCTGAACG]
[+] EMBL CD182908             [                                                                                                                                                                                                         TGTTTTGATCAAACAAACGGTTGGTAATGCTTGGGGAACTATAGCTTTATTACATGCTATAGTAAATAATAAACAAAAACTAAGCATCAAAGATGGT                                                     ]




>consensus_7398#2
ATACAATAATTTTCTAACATAATAGTATATGAATAAACTTGGAGTTGTCGAAGAGTCATG
GAAATTTATAGACATTTTTAGTTTGGATGATGATATGCTTGCATTTGTACCAGAACCCGT
GATAAGCCTATTATTTTTATATCCCCTTGAAACTCCCATTGAAAATGCTTCATTGGGTGT
CGAGGATAACTCATCCAAAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAAC
TATAGCTTTATTACATGCTATAGTAAATAATAAACAAAAACTAAGCATCAAAGATGGTTC
TTTCTTGAGCAGCGTTTTAGAGGATTTCGAAAATAAGACACCCGCTGAACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7398#1      AGAGTTTTAAAGAAACAATTATTATGAGGTGGATCCCTTTAGAAGCTAATCCTCAGGTGC 60
consensus_7398#2      ----------------------------------------ATACAATAATTTTC---TAA 17
consensus_7398#0      ------------------------------------------------------------
                                                                                  

consensus_7398#1      TAAATGAATATATGAATAAACTTGGAGTTGTCGAAGAGTCATGGAAATTTATAGACATTT 120
consensus_7398#2      CATAATAGTATATGAATAAACTTGGAGTTGTCGAAGAGTCATGGAAATTTATAGACATTT 77
consensus_7398#0      ------------------------------------------------------------
                                                                                  

consensus_7398#1      TTAGTTTGGATGATGATATGCTTGCATTTGTACCAGAACCCGTGATAAGCCTATTATTTT 180
consensus_7398#2      TTAGTTTGGATGATGATATGCTTGCATTTGTACCAGAACCCGTGATAAGCCTATTATTTT 137
consensus_7398#0      ----------------------------------AANATTCGGCACGAG--GACTATTTT 24
                                                        *  *  **  *  **   * ******

consensus_7398#1      TATATCCCCTTGAAACTCCCATTGAAAATGCTTCATTGGGTGTCGAGGATAACTCATCCA 240
consensus_7398#2      TATATCCCCTTGAAACTCCCATTGAAAATGCTTCATTGGGTGTCGAGGATAACTCATCCA 197
consensus_7398#0      TATATCCCCTTGAAACTCCCATTGATAATGCTTCATTGGGTGTCGAGGATAACTCATCCA 84
                      ************************* **********************************

consensus_7398#1      AAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATG 300
consensus_7398#2      AAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATG 257
consensus_7398#0      AAGTTGTTTTGATCAAACAAACGGTTGGTAATGCTTGTGGAACTATAGCTTTATTACATG 144
                      ************************************************************

consensus_7398#1      CTATAGTAAATAATACACAAAAACTAAGCAT-AAGTATGGTTCTTTCTTGAGCAGCGTTT 359
consensus_7398#2      CTATAGTAAATAATAAACAAAAACTAAGCATCAAAGATGGTTCTTTCTTGAGCAGCGTTT 317
consensus_7398#0      CTATAGTAAATAATAAACAAAAACTAAGCATCAAAGATGGTTCTTTCTTGAGCAGCGTTT 204
                      *************** *************** **  ************************

consensus_7398#1      TAGAGGATTTCGAANATAAGACACCCGCTGAACGTGGAGTTATCGTGGAGAGTAAAAAGG 419
consensus_7398#2      TAGAGGATTTCGAAAATAAGACACCCGCTGAACG-------------------------- 351
consensus_7398#0      TAGAGGATTTCGAAAATAAGACACCCGCTGAACGTGGAGTTATCGTGGAGAGTAAA---G 261
                      ************** *******************                          

consensus_7398#1      ANATTTCCGCGTTGCATGAAAAGTCAGCACT----------------------------- 450
consensus_7398#2      ------------------------------------------------------------
consensus_7398#0      AAATTTCCGCGTTGCATGAAAAGTCAGCACTAGAAGGTCAAACAGAAGCACCAAACGCTG 321
                                                                                  

consensus_7398#1      ------------------------------------------------------------
consensus_7398#2      ------------------------------------------------------------
consensus_7398#0      AGTCAAAAACTAATTTGCACTTTGTATGTTTTGTTGAGCATTACGGATCTCTATATGAAC 381
                                                                                  

consensus_7398#1      ------------------------------------------------------------
consensus_7398#2      ------------------------------------------------------------
consensus_7398#0      TCGATGGTCGAAAAAATGCACCCATTCTCCATGGATCGATAACATCAGCTGGTTTTCTGA 441
                                                                                  

consensus_7398#1      ------------------------------------------------------------
consensus_7398#2      ------------------------------------------------------------
consensus_7398#0      GAGATGCATGCAATGTAGTCAAAAAGTTCATCACTTGTTTACCTGGAAGTGTAGAATTCA 501
                                                                                  

consensus_7398#1      ------------------------------------------------------------
consensus_7398#2      ------------------------------------------------------------
consensus_7398#0      GTTTGATGGGGTTATGCTCTGATAATAACTGACTATAATAATAATAATAATAATAATAAT 561
                                                                                  

consensus_7398#1      ------------------------------------------------------------
consensus_7398#2      ------------------------------------------------------------
consensus_7398#0      AATAATAATAATAATAATAAATTTTTGTGTTTTTTACACTATTTGTATATCCCCGTTTCA 621
                                                                                  

consensus_7398#1      ------------------------------------------------------------
consensus_7398#2      ------------------------------------------------------------
consensus_7398#0      ACTATTTGTAACACATCACTTAACTGCATTTTCTGATTTACATTACTATTTGGTTTTGTA 681
                                                                                  

consensus_7398#1      -----------------------
consensus_7398#2      -----------------------
consensus_7398#0      CGATTTCTATATTAAAAACAAAT 704