cluster # 7404

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Schistosoma mansoni
cluster # 7404 cluster # 7404 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7404#0 length = 297 sequences # 4

consensus_7404#1 length = 276 sequences # 1

consensusID : consensus_7404#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 297
fasta sequence

                              [CTGTC-TCGTTGTCTTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATATTTCATTCGC-CCAGTATTCTCGGGATGTGGATGAGGTTTAATGA-TTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATA-TTTTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAA-TATTTATTCGTCCATGTGGCTATAGAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTGA]

[+] EMBL CD087825             [CTGTC TCGTTGTCTTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATATTTCATTCGC CCAGTATTCTCGGGATGTGGATGAGGTTTAATGACTTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATACTTTTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAACTATTTATTCGTCCATGTGGCTATAGAATTCCCTATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTG ]
[+] EMBL CD087835             [CTGTCATCGTTGT TTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATATTTCATTCGC CCAGTATTCTCGGGATGTGGATGAGGTTTAATGA TTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATA TTTTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAA TATTTATTCGTCCATGTGGCTATAGAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTG ]
[+] EMBL CD087886             [ TGTC AC TTGTC TTATTATCATATTAT AATAGTATATGATAGCTACGAAGAAGATATTTCATTCGC TCAGTATTCTCGGGATGTGGATGAGGTTTAATGA TTCTTGAAATAACCGAAACGTTGACAAATCGAGAACTGTTATTATTGATGAACGGTTTGTGA                                                                                                                                      ]
[-] EMBL CD087919             [                                                            TTTCATTCGCNCCAGTATTCTCGGGATGTGGATGAGGTTTAATGA TTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATA TTTTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAA TATTTATTCGTCCATGTGGCTATAAAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTGA]




>consensus_7404#0
CTGTCTCGTTGTCTTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATAT
TTCATTCGCCCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAA
ACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATT
TTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCA
TGTGGCTATAGAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTGA

consensusID : consensus_7404#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [ACTGTCTTTATANTCATATTATAATAGTATATGATAGCTACGAAGAAATATNNTCATTCGCNCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATTTTTTACAAGTAACCACTAAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCATGTGGCTATAAAATTCCATATTGTAGAATCCTTCAGGAGACACC]

[-] EMBL CD087927             [ACTGTCTTTATANTCATATTATAATAGTATATGATAGCTACGAAGAAATATNNTCATTCGCNCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAAACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATTTTTTACAAGTAACCACTAAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCATGTGGCTATAAAATTCCATATTGTAGAATCCTTCAGGAGACACC]




>consensus_7404#1
ACTGTCTTTATANTCATATTATAATAGTATATGATAGCTACGAAGAAATATNNTCATTCG
CNCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAAACGTTGAC
AAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATTTTTTACAA
GTAACCACTAAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCATGTGGCTA
TAAAATTCCATATTGTAGAATCCTTCAGGAGACACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7404#0      CTGTCTCGTTGTCTTTATGATCATATTATAAATAGTATATGATAGCTACGAAGAAAATAT 60
consensus_7404#1      -------ACTGTCTTTATANTCATATTATAA-TAGTATATGATAGCTACGAAGAAATATN 52
                               *********  *********** ************************    

consensus_7404#0      TTCATTCGCCCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAA 120
consensus_7404#1      NTCATTCGCNCAGTATTCTCGGGATGTGGATGAGGTTTAATGATTCTTGAAATAACCGAA 112
                       ******** **************************************************

consensus_7404#0      ACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATT 180
consensus_7404#1      ACGTTGACAAATCGAAAACTGTTATTATTGATGAACGGTTTGTGAAAAATGTAGGATATT 172
                      ************************************************************

consensus_7404#0      TTTTACAAGTAACTACTGAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCA 240
consensus_7404#1      TTTTACAAGTAACCACTAAAGTTTGCTACACACGTCGAAATAGAAATATTTATTCGTCCA 232
                      ************* *** ******************************************

consensus_7404#0      TGTGGCTATAGAATTCCATATTGTAGAACCCTTTGAAAGATGCAAAGCGTTTGTTGA 297
consensus_7404#1      TGTGGCTATAAAATTCCATATTGTAGAATCCTTCAGGAGACACC------------- 276
                      ********** ***************** ****    ***  *