These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7406#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 963 fasta sequence [GGTGCAAACAAATAATCACAGTAAAAAGGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCACTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGATATGAATGCAGAGGCAATTTCACAAGACAATTCTCTTTTATATATGTTCAATTCAGAATCGGTGGCTAGTTCATGTGGTTGGTTAATATCAGATAATGATCTATCTTGTAGTCCCACTGCTGTTGGCGTCTATTGCACAACTACAATGCGATCAAATATTAAGGCATGGCCAATACACCCATCAATGTTACATAGTAATAATATCGTTGAAGAAGAAAACTCCAAGGAAGACAAAGAAGCATTCACTTTATCTGAAAAAGATGAGAAAGAACTAACTGAGAAAACACGACTATGGAATTCTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTNTAAAAGGTAAAAACCTTTTCACCATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGGTGACATTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTCTAGGTAAACTAACCG] [+] EMBL CD084086 [GGTGCAAACAAATAATCACAGTAAAAAGGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCACTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATG ] [+] EMBL CD078735 [ GCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCACTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGATATGAATGCAGAGGCAATTTCACAAGACAATTCTCTTTTATATATGTTCAATTCAGAATCGGTGGCTAGTTCATGTGGTTGGTTAATATCAGATAATGATCTATCTTGTAGTCCCACTGCTGTTGGCGTCTATTGCACAACTACAATGCGATCAAATATTAAGGCATGGCCAATACACCCATCAATGTTACATAGTAATAATATCGTTGAAGAAGAAAACTCCAAGGAAGACAAAGAAGCATTCACTTTATCTGAAAAAGATGAGAAAGAACTAACTGAGAAAACACGACTATGGAATTCTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTNTAAAAGGTAAAAACCTTTTCACCATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGG ] [+] EMBL CD136790 [ TATCTGAAAAAGATGACAGAGAACTAACTGAGAAAACACGACTATGGAATTCTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTTTAAAAGGTAAAAACCTTTTCAACATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGGTGACATTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTCTAGGTAAACTAACCG] consensusID : consensus_7406#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CGACTATGGAATTTTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTTTAAAAGGTAAAAACCTTTTCAACATGATTTTAATTCAAAGTGATTCATCTGATGAATTTTTACTACTCGGTGACAGTAATACCAATGATAATAATAATAATCAAAATTCTCCGACAGTTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTTTAGGTAAACTAACCGAAGATAATGCTATGAAACAATTATGCTTTATGGTTGGTTCACAATCGACTGTTCTATGCTCTTATGAAATATCATTATCAACTTGAATATAATCCAAATGATAATTAGGTATGTTTTTCCTTGTTGTTGTTCTGTTGAAAACCGATGTGTACAGATTCACTTTCCACTTTTATATTGGATTGTGATAAATTTATGTTGTATTGGAGGGTAATTATTTTTGTATACTGTAAAGTTTCCCTCTTTACCTCTTATGTAATTATATATCG] [-] EMBL CD073197 [CGACTATGGAATTTTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTTTAAAAGGTAAAAACCTTTTCAACATGATTTTAATTCAAAGTGATTCATCTGATGAATTTTTACTACTCGGTGACAGTAATACCAATGATAATAATAATAATCAAAATTCTCCGACAGTTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTACTATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTTTAGGTAAACTAACCGAAGATAATGCTATGAAACAATTATGCTTTATGGTTGGTTCACAATCGACTGTTCTATGCTCTTATGAAATATCATTATCAACTTGAATATAATCCAAATGATAATTAGGTATGTTTTTCCTTGTTGTTGTTCTGTTGAAAACCGATGTGTACAGATTCACTTTCCACTTTTATATTGGATTGTGATAAATTTATGTTGTATTGGAGGGTAATTATTTTTGTATACTGTAAAGTTTCCCTCTTTACCTCTTATGTAATTATATATCG] consensusID : consensus_7406#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence [GGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGCCCGCTATCCAGTCTTATAAACAATTTCTGAATGTACCTTTCACTTGTTGTTCTATCAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCGCTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGAT] [-] EMBL CD087647 [GGTACCTATTGAAACAAATCTTGTGGACATCGACTATTCACCTGGAATAAGTTCGCTATTATGTTGTTCTGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCCACAGCCCGCTATCCAGTCTTATAAACAATTTCTGAATGTACCTTTCACTTGTTGTTCTATCAGTGCAGATGGCAGTCTAATTTGTTGTGGTACAGAAGTTTACAGATTGAAAAAGAAACGTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAGTTAGTTTATTGGGACACACGAAATCTATCATCTCCATTGAGCGCTATTAAAGATTTACATTCAGATGATATTGTTGATGTAAAATTCGATCCTACTTCTGTTCCCGGTTATTTACGTCTAATGGATTGTTCTGAAGATGGCGTAATATGCTTGTATGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7406#0 --------------------------------GGTGCAAACAAATAATCACAGTAAAAAG 28 consensus_7406#2 -----------------------------------------------------------G 1 consensus_7406#1 CGACTATGGAATTTTAAATTTAACACGAATAATCATAATAATGACGATGATGATAATGAG 60 * consensus_7406#0 GTACCTATTGAAACAAATCTTGTGGACATCGACT--ATTCACCTGGAATAAGTTCGCTA- 85 consensus_7406#2 GTACCTATTGAAACAAATCTTGTGGACATCGACT--ATTCACCTGGAATAAGTTCGCTA- 58 consensus_7406#1 ATTTTAAAAGGTAAAAACCTTTTCAACATGATTTTAATTCAAAGTGATTCATCTGATGAA 120 * * * * *** *** * **** * ***** ** * * * * consensus_7406#0 -TTATGTTGTTC--TGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCC-ACA 141 consensus_7406#2 -TTATGTTGTTC--TGATAAAGATGTCCAGATTTGGGATATGAGGGATAACATTCC-ACA 114 consensus_7406#1 TTTTTACTACTCGGTGACAGTAATACCAATGATAATAATAATAATCAAAATTCTCCGACA 180 ** * * ** *** * ** * * * *** * * ** *** *** consensus_7406#0 G----------------------------------------------------------- 142 consensus_7406#2 GCCCGCTATCCAGTCTTATAAACAATTTCTGAATGTACCTTTCACTTGTTGTTCTATCAG 174 consensus_7406#1 GTTTTCCATTCAAA-TCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTAC 239 * consensus_7406#0 TGCAGATGGCAGTC---TAATTTGTTGTGGTACAGA-----AGTTTACAGATTGAAAAAG 194 consensus_7406#2 TGCAGATGGCAGTC---TAATTTGTTGTGGTACAGA-----AGTTTACAGATTGAAAAAG 226 consensus_7406#1 TATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTTTAGG 299 * * * * ** **** * ** ** * * * * * **** * * consensus_7406#0 -AAAC--GTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAG 251 consensus_7406#2 -AAAC--GTCGAAAACTTAACTCTAAAAATGCTAGTGAATGCGATGCGGAAACAGCTCAG 283 consensus_7406#1 TAAACTAACCGAAGATAATGCTATGAAACAATTATGCTTTATGGTTGGTTCACAA-TCGA 358 **** **** * ** * *** ** * * * * *** ** consensus_7406#0 TTAGTTTATTGGGACACACGAAATC--TATCATCTCCATTG-AGCACTATTAAAGATT-- 306 consensus_7406#2 TTAGTTTATTGGGACACACGAAATC--TATCATCTCCATTG-AGCGCTATTAAAGATT-- 338 consensus_7406#1 CTGTTCTATGCTCTTATGAAATATCATTATCAACTTGAATATAATCCAAATGATAATTAG 418 * * *** * * *** ***** ** * * * * * * * *** consensus_7406#0 ---TACATTCAGATGATATTGTTGATGTAAAATTCGATCC-TAC---TTCTGTTCCCGGT 359 consensus_7406#2 ---TACATTCAGATGATATTGTTGATGTAAAATTCGATCC-TAC---TTCTGTTCCCGGT 391 consensus_7406#1 GTATGTTTTTCCTTGTTGTTGTTCTGTTGAAAACCGATGTGTACAGATTCACTTTCCACT 478 * ** ** * ***** * *** **** *** *** ** ** * consensus_7406#0 TATTTACG----TCTAATGGATT---GTTCTGAAGATGGCGTAATATGCTTGTATGATAT 412 consensus_7406#2 TATTTACG----TCTAATGGATT---GTTCTGAAGATGGCGTAATATGCTTGTATGAT-- 442 consensus_7406#1 TTTATATTGGATTGTGATAAATTTATGTTGTATTGGAGGGTAATTATTTTTGTATACTGT 538 * * ** * * ** *** *** * * ** * *** ****** * consensus_7406#0 GAATGCAGAGGCAATTTCACAAGACAATTCTCTTTTATATATGTTCAATTCAGAATCGGT 472 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 AAAGTTTCCCTCTTTACCTCTTATGTAATTATATATCG---------------------- 576 consensus_7406#0 GGCTAGTTCATGTGGTTGGTTAATATCAGATAATGATCTATCTTGTAGTCCCACTGCTGT 532 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 TGGCGTCTATTGCACAACTACAATGCGATCAAATATTAAGGCATGGCCAATACACCCATC 592 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 AATGTTACATAGTAATAATATCGTTGAAGAAGAAAACTCCAAGGAAGACAAAGAAGCATT 652 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 CACTTTATCTGAAAAAGATGAGAAAGAACTAACTGAGAAAACACGACTATGGAATTCTAA 712 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 ATTTAACACGAATAATCATAATAATGACGATGATGATAATGAGATTNTAAAAGGTAAAAA 772 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 CCTTTTCACCATGATTCTAATTCAAAGTGATTCATCTGATGAATTTCTACTACTCGGTGA 832 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 CATTTTCCATTCAAATCATCAATCAAAGTGGACAATGTCTTGTTTGCCATCAAATATTAC 892 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 TATGAAAGACTCTCAAGCAATTAATAGTAGTTTTAATTTACAATATGCCGATTTTCTAGG 952 consensus_7406#2 ------------------------------------------------------------ consensus_7406#1 ------------------------------------------------------------ consensus_7406#0 TAAACTAACCG 963 consensus_7406#2 ----------- consensus_7406#1 ----------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||