These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7407#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 972 fasta sequence [TCTGGCACGTTCTCCATGAACATTTAACTGAAAGTTTCGATTCTCGTGAGGCTGAAGACGTAGAATTGCCCTCAGCTTTCACCAGTGACAAGGAGATGCAAATCTTGAATATATACAAGAGCTTCTTATGTCGCTATGCAGTGAATTTCAAGGCTTTCTCGGAAATGTACTCCACGAATGAAGAACTTCAAAATATATGTAAAGGTATCGTTGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGGCTTAAAGGAACCATGCTTCCGAGCGACCCAGAATATACAAATGTCACAAAGGCTTGGAATTTCATCAAGGATTTGTTGGATCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATCTAGAAGGGCCTGCAAAGAAACTTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTTGGTCGTTATCAAGTTAAGTCAGAGATAGGTCTGGCTGGGATGACATTATGTGAAGTGAAAGATGATGAAGAAATCAATGTTGAACATTGTTTTAGAATTAAAGCGAAAGAGCTATGCGTCGAGGTTGCTTTCTCAAATGATGATGAAAAACAACTTTGGTGGCGTGAACTTCAACAGGCTATTGATTGTGAATGTAACAGACCGAATAGTAATGGTTTCAATGAAAAAAAAGTCAATAATGAGTGCAAATAATTTAGGTGAAGTTGCAGCTCAATGGGTTAAAGATGAATCATCTACAATGTGTACAAATTGTTGTACAGAATTTACTACACTTAATCGACGACATCATTGTCGTGCA] [+] EMBL CD115579 [TCTGGCACGTTCTCCATGAACATTTAACTGAAAGTTTCGATTCTCGTGAGGCTGAAGACGTAGAATTGCCCTCAGCTTTCACCAGTGACAAGGAGATGCAAATCTTGAATATATACAAGAGCTTCTTATGTCGCTATGCAGTGAATTTCAAGGCTTTCTCGGAAATGTACTCCACGAATGAAGAACTTCAAAATATATGTAAAGGTATCGTTGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGGCTTAAAGGAACCATGCTTCCGAGCGACCCAGAATATACAAATGTCACAAAGGCTTGGAATTTCATCAAGGATTTGTTGGATCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATCTAGAAGGGCCTGCAAAGAAACTTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTTGGTCGTTATCAAGTTAAGTCAGAGATAGGTCTGGCTGGG ] [-] EMBL CD114072 [ TGAAGACGTAGAATTGCCCTCAGCTTTCACCAGTGACAAGGAGATGCAAATCTTGAATATATACAAGAGCTTCTTATGTCGCTATGCAGTGAATTTCAAGGCTTTCTCGGAAATGTACTCCACGAATGAAGAACTTCAAAATATATGTAAAGGTATCGTTGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTATCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGGCTTAAAGGAACCATGCTTCCGAGCGACCCAGAATATACAAATGTCACAAAGGCTTGGAATTTCATCAAGGATTTGTTGGATCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATC ] [+] EMBL CD192334 [ TTTGTTGAATCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGGTAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATCTAGAAGGGCCTGCAAAGAAACTTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTCGG ] [-] EMBL CD147758 [ TTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCTTTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTTGGTCGTTATCAAGTTAAGTCAGAGATAGGTCTGGCTGGAATGACATTATGTGAAGTGAAAGATGATGAAGAAATCAATGTTGAACATTGTTTTAGAATTAAAGCGAAAGAGCTATGCGTCGAGGTTGCTTTCTCAAATGATGATGAAAAACAACTTTGGTGGCGTGAACTTCAACAGGCTATTGATTGTGAATGTAACAGACCGAATAGTAATGGTTTCAATGAAAAAAAAGTCAATAATGAGTGCAAATAATTTAGGTGAAGTTGCAGCTCAATGGGTTAAAGATGAATCATCTACAATGTGTACAAATTGTTGTACAGAATTTACTACACTTAATCGACGACATCATTGTCGTGCA] consensusID : consensus_7407#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 348 fasta sequence [ATAGTTTGGGAAAAATTGAGCGGCAATTATATAGTAAACATTAAATGCAAGAATTGTACTTGAATGCTCTCAGCAATCGCCGTACGAAACAGTGGAATCATTCAAGTTTCAATCGCTCAGATTATTGAAATACAATTTTCACATCGAACATCAGGTGGTTTACATTCATAAATAATAATTAACTAACTTGTTCGTTCATTACGTTTTTCATCTTCTATATAACATTCTAGGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGTAAGCTTCAAATTGTGAAGA] [+] EMBL CD193593 [ATAGTTTGGGAAAAATTGAGCGGCAATTATATAGTAAACATTAAATGCAAGAATTGTACTTGAATGCTCTCAGCAATCGCCGTACGAAACAGTGGAATCATTCAAGTTTCAATCGCTCAGATTATTGAAATACAATTTTCACATCGAACATCAGGTGGTTTACATTCATAAATAATAATTAACTAACTTGTTCGTTCATTACGTTTTTCATCTTCTATATAACATTCTAGGCAAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAGCACAGCATTAACACGATACAAAGATCTCATTTATAGTAAGCTTCAAATTGTGAAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7407#0 TCTGGCACGTTCTCCATGAACATTTAACTGAAAGTTTCG--ATTCTCGTGAGGCTGAAGA 58 consensus_7407#1 --------ATAGTTTGGGAAAAATTGAGCGGCAATTATATAGTAAACATTAAATGCAAGA 52 * * *** * ** * * * ** * * * * **** consensus_7407#0 CGTAGAATTG----CCCTCAGCTTTCACCA-GTGACAAGGAGATGCAAATCTTGAATATA 113 consensus_7407#1 ATTGTACTTGAATGCTCTCAGCAATCGCCGTACGAAACAGTGGAATCATTCAAGTTTCAA 112 * * *** * ****** ** ** ** * * * * ** * * * consensus_7407#0 TACAAGAGCTTCTTATGTCGCTAT----GCAGTGAATTTCAAG--GCTTTC--TCGGAAA 165 consensus_7407#1 TCGCTCAGATTATTGAAATACAATTTTCACATCGAACATCAGGTGGTTTACATTCATAAA 172 * ** ** ** * ** ** *** *** * * ** * ** *** consensus_7407#0 TG-TACTCCACGAATGAAGAACTTCAAAATATATGTAA------AGGTATCGTT----GC 214 consensus_7407#1 TAATAATTAACTAACTTGTTCGTTCATTACGTTTTTCATCTTCTATATAACATTCTAGGC 232 * ** * ** ** **** * * * * * * ** * ** ** consensus_7407#0 AAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAG 274 consensus_7407#1 AAAGTCTCAATATCAGGAGCAACGTATTCAGAATGTACCTGGGATGTTCTATGGTGTCAG 292 ************************************************************ consensus_7407#0 CACAGCATTAACACGATACAAAGATCTCATTTATAG---GCTTAAAGGAACCATGCTTCC 331 consensus_7407#1 CACAGCATTAACACGATACAAAGATCTCATTTATAGTAAGCTTCAAATTGTGAAGA---- 348 ************************************ **** ** * * consensus_7407#0 GAGCGACCCAGAATATACAAATGTCACAAAGGCTTGGAATTTCATCAAGGATTTGTTGGA 391 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TCGTTCGGAACAGGAAATTATTTTACAGGAGAAAATGTCGAATGCTAGAGAAGCACTTGG 451 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TAAACTGGATGGTCTTCGTGTAAAGTATACTCAGATCCCGTTACTACATCTAGAAGGGCC 511 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TGCAAAGAAACTTCCTAGACGTTCAATACATAGACGACTTTTGGATAGATATTTATTTCT 571 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TTTTTCCGAATATTTGGTCATGACTGAATCCCCTAATGCTGTTGGTCGTTATCAAGTTAA 631 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 GTCAGAGATAGGTCTGGCTGGGATGACATTATGTGAAGTGAAAGATGATGAAGAAATCAA 691 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TGTTGAACATTGTTTTAGAATTAAAGCGAAAGAGCTATGCGTCGAGGTTGCTTTCTCAAA 751 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 TGATGATGAAAAACAACTTTGGTGGCGTGAACTTCAACAGGCTATTGATTGTGAATGTAA 811 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 CAGACCGAATAGTAATGGTTTCAATGAAAAAAAAGTCAATAATGAGTGCAAATAATTTAG 871 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 GTGAAGTTGCAGCTCAATGGGTTAAAGATGAATCATCTACAATGTGTACAAATTGTTGTA 931 consensus_7407#1 ------------------------------------------------------------ consensus_7407#0 CAGAATTTACTACACTTAATCGACGACATCATTGTCGTGCA 972 consensus_7407#1 ----------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||