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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7419#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 498 fasta sequence
[GCTGATCTACCAGTGGAAATGGGTAGAGCAATGTGTTTAGCTATCCAACAATTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGTCTAGTGGTGAAGCGGGAAAAGTGCACATTTCTGAGGCTACTTTAAGTTTTATAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCAGTTTGCCACCAATGCAACTGGAAGTGGGTCCAGTTCAATTACAAAGTACTAATAATGTCTGTGATACTGAAACTGTTACC]
[+] EMBL CD202828 [GCTGATCTACCAGTGGAAATGGGTAGAGCAATGTGTTTAGCTATCCAACAATTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACGAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGT ]
[+] EMBL CD068436 [ TGTTTAGCTATCCAACAATTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGTCTAGTGGTGAAGCGGGAAAAGTGCACATTTCTGAGGCTACTTTAAGTTTTATAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCAGTTTGCCACCAATGCAACTGGAAGTGGGTCCAGTTCAATTACAAAGTACTAATAATGTCTGTGATACTGAAACTGTTACC]
[-] EMBL CD187557 [ CTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGTCTAGTGGTGAAGCGGGAAAAGTGCACATTTCTGAGGCTACTTTAAGTTTTGTAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAA ]
consensusID : consensus_7419#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence
[ACATTTGTGAGGCTACTTTAAGTTTTGTAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCGGTTTGCCACCAATGCAACTGGAAGTTGGTCCAGTTCAATTACAAAGTGTGAATCAGAGTTCAAACTTGCAGCCTATTTCCTGAAATTATGAATGTTCCAACCACTATGTCATTGCTTAAAGAAATATCAGTTTTATAGATGTGGCGGTTTATGTTAATGCGTTTCTAGATCCTAATACTAATAATGTTTGTGATAC]
[-] EMBL CD114417 [ACATTTGTGAGGCTACTTTAAGTTTTGTAAAAGATATTTATGAAGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAACATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCGGTTTGCCACCAATGCAACTGGAAGTTGGTCCAGTTCAATTACAAAGTGTGAATCAGAGTTCAAACTTGCAGCCTATTTCCTGAAATTATGAATGTTCCAACCACTATGTCATTGCTTAAAGAAATATCAGTTTTATAGATGTGGCGGTTTATGTTAATGCGTTTCTAGATCCTAATACTAATAATGTTTGTGATAC]
consensusID : consensus_7419#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence
[CTACGTACCCTGCAATTACCGACTGCGGCATATGGGTAGAGCAATGTGTTTAGCTATCCAACTTTTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGA]
[+] EMBL CD168576 [CTACGTACCCTGCAATTACCGACTGCGGCATATGGGTAGAGCAATGTGTTTAGCTATCCAACTTTTTGATGAAGATCATTCAGAGGAAGTGAATATGCGTGTCGGTGTACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAAATTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7419#0 ----------------------------GCTGATCTACCAGTGGAAATGGGTAGAGCAAT 32
consensus_7419#2 ---------------CTACGTACCCTGCAATTACCGACTGCGGCATATGGGTAGAGCAAT 45
consensus_7419#1 ACATTTGTGAGGCTACTTTAAGTTTTGTAAAAGATATTTATGAAGTTTCTGAAGGAAAAC 60
* * ** **
consensus_7419#0 GTGTTTA-GCTATCCAACAATTTGATGAA-------GATCATTCAGAGGAAGTGAATATG 84
consensus_7419#2 GTGTTTA-GCTATCCAACTTTTTGATGAA-------GATCATTCAGAGGAAGTGAATATG 97
consensus_7419#1 CTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTTCAATAAAGAAGAACA-A 119
**** * * *** * * *** * * ** **** * *** *
consensus_7419#0 CGTGTCGGTGT-ACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAA 143
consensus_7419#2 CGTGTCGGTGT-ACACACTGGTAAAGTGATCTGTGGTATCGTCGGAACAAGACGCTTTAA 156
consensus_7419#1 TGTTTCGCCATTAAACATACTCAAGACGAA----GCTATGATCAAAACATATTTTATTGA 175
** *** * * *** ** ** * *** ** **** ** *
consensus_7419#0 A------TTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGAGTCTAGTGG 197
consensus_7419#2 A------TTTGATGTTTGGTCAAATGATGTTACATTAGCTAATGAAATGGA--------- 201
consensus_7419#1 AAAACGTTTGGATGATAAGCCAGTCGTCGGTTTGCCACCAATGCAACTGGAAGTTGGTCC 235
* ** **** * * ** * * * * * * ** ****
consensus_7419#0 TGAAGCGGGAAAAGTGCACATTTCTGAGGCTACTTTAAGTTTTATAAAAGATATTTATGA 257
consensus_7419#2 ------------------------------------------------------------
consensus_7419#1 AGTTCAATTACAAAGTGTGAATCAGAGTTCAAACTTGCAGCCTATTTCCTGAAATTATGA 295
consensus_7419#0 AGTTTCTGAAGGAAAACCTGTTCATGATATTCGAAAATTTAAAGTGTTAGTTGAATTTTT 317
consensus_7419#2 ------------------------------------------------------------
consensus_7419#1 ATGTTCCAACCACTATGTCATTGCTTAAAGAAATATCAGTTTTATAGATGTGGCGGTTTA 355
consensus_7419#0 CAATAAAGAAGAACAATGTTTCGCCATTAAACATACTCAAGACGAAGCTATGATCAAAAC 377
consensus_7419#2 ------------------------------------------------------------
consensus_7419#1 TGTTAATGCGTTTCTAGATCCTAATACTAATAATGTTTGTGATAC--------------- 400
consensus_7419#0 ATATTTTATTGAAAAACGTTTGGATGATAAGCCAGTCGTCAGTTTGCCACCAATGCAACT 437
consensus_7419#2 ------------------------------------------------------------
consensus_7419#1 ------------------------------------------------------------
consensus_7419#0 GGAAGTGGGTCCAGTTCAATTACAAAGTACTAATAATGTCTGTGATACTGAAACTGTTAC 497
consensus_7419#2 ------------------------------------------------------------
consensus_7419#1 ------------------------------------------------------------
consensus_7419#0 C 498
consensus_7419#2 -
consensus_7419#1 -
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||