These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7427#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence [TCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTATGGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGAATACCAATGTTTGAAGTCACTGGTCTTGAGAAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAAACAACAATACTTGAACACTCTCCATCCTTAACTTGGATCGCTCAACGCACCAGGTCAGAAATTATGACATTGATTAATTTGGTTGCATCCTTATGTACCAAAATGCACTGGAATTCTAAATTGAACGTGTGGATTTTTTCTCTTCTGGTGGCTNTGGAGCCACCATTTCATCCAGATTTATGCCATGATCTTCGCACTATCGTTAAACGATGCCGCANATTAAGACGGGATTNCGAACAGTCATCATTTCCTACTACTGATAATAGTGTGAAACAGTGCAGTGTTGTCGCTGAAGATA-TAAA-TTTTCAA-TTATGTATCAATC-TATATCTCATACTTTT-GCCCATCTGATCTAGCTGATGAATTAACTGACNTAAA-GATTTCTGGCTTTCTATATTC-TTTTTAACCNGGNNATCCATGTGGNAAATAATATTTTT] [+] EMBL CD082428 [TCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTATGGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGAATACCAATGTTTGAAGTCACTGGTCTTGAGAAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAAACAACAATACTTGAACACTCTCCATCCTTAACTTGGATCGCTCAACGCACCAGGTCAGAAATTATGACATTGATTAATTTGGTTGCATCCTTATGTACCAAAATGCACTGGAATTCTAAATTGAACGTGTGGATTTTTTCTCTTCTGGTGGCTNTGGAGCCACCATTTCATCCAGATTTATGCCATGATCTTCGCACTATCGTTAAACGATGCCGCANATTAAGACGGGATTNCGAACAGTCATCATTTCCTACTACTGATAATAGTGTGAAACAGTGCAGTGTTGTCGCTGAAGATA TAAA TTTTCAA TTATGTATCAATC TATATCTCATACTTTT GCCCATCTGATCTAGCTGATGAATTAACTGACNTAAA GATTTCTGGCTTTCTATATTC TTTTTAACCNGGNNATCCATGTGGNAAATAATATTT ] [-] EMBL CD076027 [ CCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGAATACCAATGTTTGAAGTCACTGGTCTTGAGAAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAAACAACAATACTTGAACACTCTCCATCCTTAACTTGGATCGCTCAACGCACCAGGTCAGAAATTATGACATTGATTAATTTGGTTGCATCCTTATGTACCAAAATGCACTGGAATTCTAAATTGAACGTGTGGATTTTTTCTCTTCTGGTGGCTTTGGAGCCACCATTTCATCCAGATTTATGCCATGATCTTCGCACTATCGTTAAACGATGCCGCAAATTAAGACGGGATTTCGAACAGTCATCATTTCCTACTACTGATAATAGTGTGAAACAGTGCAGTGTTGTCGCTGAAGATATTAAATTTTTCAATTTATGTATCAATCTTATATCTCATACTTTTGGCCAATCTGATCTAGCTGATGAATTAACTGAC TAAATGATTTCTGTCTTTCTATATTCTTTTTTAAACTGG TATTCATGT GTAAATAATAATTTT] consensusID : consensus_7427#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 536 fasta sequence [AATGACTGAGCTACGTTAACTCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTAT-GGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGTAATAAACTGTCTCATTTTTATTCATTGTCTCATAGGAATACCAATGTTTGAAGTCACTGGTCTTGAGAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAACAACAATACTTGAACACTCTCCATCCTTAACTGGGATC] [+] EMBL CD133374 [AATGACTGAGCTACGTTAACTCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTAT GGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGACATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAAGTCATTCATTTCCGTAAAACTGTTGATGTAATAAACTGTCTCATTTTTATTCATTGTCTCATAGGAATACCAATGTTTGAAGTCACTGGTCTTGAGAATTCCGATGATATGACAAAAACTGTTCTTCCAATAAATAAACAACAATACTTGAACACTCTCCATCCTTAACTGGGATC] [+] EMBL SMAA18523 [ GGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTAT GGTCAACCAAACGGGTGCCTCAACAACTGAGTATGCTAA ] [+] EMBL SMAA18499 [ GGGAATAATTGCAGTTTGATACATTCAATTAAATGTCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTTGATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAATTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACAAGTATGGGTCAACC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7427#0 --------------------TCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATG 40 consensus_7427#1 AATGACTGAGCTACGTTAACTCTCAGGGAATAATTGCAGTTTGATACATTCAATTAAATG 60 **************************************** consensus_7427#0 TCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTT 100 consensus_7427#1 TCTGATTCGGAGGATTCAGATATAGGTTTACTTGTGCAAGCACTACCAGTTTCAGATTTT 120 ************************************************************ consensus_7427#0 GATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAA 160 consensus_7427#1 GATTTGAATGACCCACCTAATTACGAGAAGGCTCTTACATCACCTGATGAATACTTAAAA 180 ************************************************************ consensus_7427#0 TTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACA 220 consensus_7427#1 TTTGTGCGGTATCAAGCTTTATCATTCCCGAGTGTGTTATGTTGTCGCGACCTACCTACA 240 ************************************************************ consensus_7427#0 AGTATGGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGAC 280 consensus_7427#1 AGTATGGTCAACCAAACGGCTGCCTCAACAACTGAGTATGCTAAATCGACTGACAGTGAC 300 ************************************************************ consensus_7427#0 ATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAA 340 consensus_7427#1 ATTCAAAAAACTTGCAAAGTCATTTCTATAAAAATTTCAAGACATTTACAAGAAAATCAA 360 ************************************************************ consensus_7427#0 GTCATTCATTTCCGTAAAACTGTTGATG-------------------------------- 368 consensus_7427#1 GTCATTCATTTCCGTAAAACTGTTGATGTAATAAACTGTCTCATTTTTATTCATTGTCTC 420 **************************** consensus_7427#0 -----AATACCAATGTTTGAAGTCACTGGTCTTGAGAAATTCCGATGATATGACAAAAAC 423 consensus_7427#1 ATAGGAATACCAATGTTTGAAGTCACTGGTCTTGAGAA-TTCCGATGATATGACAAAAAC 479 ********************************* ********************* consensus_7427#0 TGTTCTTCCAATAAATAAAACAACAATACTTGAACACTCTCCATCCTTAACTTGGATCGC 483 consensus_7427#1 TGTTCTTCCAATAAATAAA-CAACAATACTTGAACACTCTCCATCCTTAACTGGGATC-- 536 ******************* ******************************** ***** consensus_7427#0 TCAACGCACCAGGTCAGAAATTATGACATTGATTAATTTGGTTGCATCCTTATGTACCAA 543 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 AATGCACTGGAATTCTAAATTGAACGTGTGGATTTTTTCTCTTCTGGTGGCTNTGGAGCC 603 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 ACCATTTCATCCAGATTTATGCCATGATCTTCGCACTATCGTTAAACGATGCCGCANATT 663 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 AAGACGGGATTNCGAACAGTCATCATTTCCTACTACTGATAATAGTGTGAAACAGTGCAG 723 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 TGTTGTCGCTGAAGATATAAATTTTCAATTATGTATCAATCTATATCTCATACTTTTGCC 783 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 CATCTGATCTAGCTGATGAATTAACTGACNTAAAGATTTCTGGCTTTCTATATTCTTTTT 843 consensus_7427#1 ------------------------------------------------------------ consensus_7427#0 AACCNGGNNATCCATGTGGNAAATAATATTTTT 876 consensus_7427#1 --------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||