These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7429#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 861 fasta sequence [CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCATGTTGTAGAAGTTTTAAAACACAATCAACTGAATTCACTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAACAATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGCTAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTTCTTTTT] [-] EMBL CD154050 [CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCATGTTGTAGAAGTTTTAAAACACAATCAACTGAATTCACTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAA ] [+] EMBL CD181870 [ GAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTTTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCAT ] [-] EMBL CD168635 [ CTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAACAATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGCTAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTTCTTTTT] [+] EMBL CD195539 [ GGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTT ] consensusID : consensus_7429#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [TTCGACAAGATATTTCCGCTTGTTCCTATATTAGTATTTGGAGGATTCCGAAAGTTGATTTGTGGAGTCACTGTGCTTCCAGCAACAGTACAGTTTGAACTACGAGATGATAACTGTGGTTGATTTGTGTTACCAGTTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCACCCTAAAAATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATATTAAAACAAGGTGGTGACAATTCTTTGACAACAGTAAATCACATAAACATACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATTTAATGTATGTTCACAGCTGGACATACCAGGTGATATCATAGCAATCATACACGTTCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCCTACACACGTANAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATAAAATGTTTCATATGAAATTTCACTTAACAACATATCGAAGTGATCTGTAAAACCTAACAAAACATGCT] [+] EMBL CD179166 [TTCGACAAGATATTTCCGCTTGTTCCTATATTAGTATTTGGAGGATTCCGAAAGTTGATTTGTGGAGTCACTGTGCTTCCAGCAACAGTACAGTTTGAACTACGAGATGATAACTGTGGTTGATTTGTGTTACCAGTTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCACCCTAAAAATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATATTAAAACAAGGTGGTGACAATTCTTTGACAACAGTAAATCACATAAACATACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATTTAATGTATGTTCACAGCTGGACATACCAGGTGATATCATAGCAATCATACACGTTCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCCTACACACGTANAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATAAAATGTTTCATATGAAATTTCACTTAACAACATATCGAAGTGATCTGTAAAACCTAACAAAACATGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7429#0 CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTG 60 consensus_7429#1 ------------------------------------------------------------ consensus_7429#0 CACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTT 120 consensus_7429#1 --------------------------------TTCGA---CAAGATATTTCCGCTTGTTC 25 ** * ** * * ** * ** consensus_7429#0 CAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTAC 180 consensus_7429#1 CTATATTAGTATTTGGAGGATTCCGA--AAGTTGATTTGTGGAGTCACTGTGCTT----- 78 * * ** *** ** *** * * **** *** * * consensus_7429#0 CCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAA 240 consensus_7429#1 CCAGCAACAGTACAGTTTGAACTACGAGATGA-TAACTGTGGTTGATT-TGTGTTACCAG 136 ** *** * * * * * **** * ** ** **** * * ** * consensus_7429#0 TCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAG 300 consensus_7429#1 TTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCA 196 * * * *** ** *** * * * *** * * * * consensus_7429#0 TTCGAATATGTGCACCATGTTGTA--GAAGTTTTAAAACACAATCAACTGAATTCACTTC 358 consensus_7429#1 CCCTAAAA-ATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATA 255 * ** * * * ** *** * ******** *** * * ** ** ** * * consensus_7429#0 TTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTT 418 consensus_7429#1 TTA-------AAACAAGGTGGTGACAATT---CTTTGACAACAGT-AAATCACATAAACA 304 ** ** * * * * * ** **** ** * * * * * * consensus_7429#0 GGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAAC 478 consensus_7429#1 TACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATT----T 360 * * * * ** ** ** ** *** * * * * * ** consensus_7429#0 AATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGC 538 consensus_7429#1 AATGT----ATGTTCACAGCTGGACATACCAGG--TGATATCATAGCAATCA-TACACGT 413 *** ** *** ** ** ** * * * ** ** **** * * consensus_7429#0 TAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCAT 598 consensus_7429#1 TCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTT---AATTTACTTGCACG 470 * * * * **** ** * *** ** * * *** **** ** * consensus_7429#0 TGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATAC-CACGTT 657 consensus_7429#1 AAAAGGTAGATGTGCA---CCACGCCGACCAAGAGCACGA-ATGCATTCCTACACACGTA 526 * * * * ** ** * *** **** *** * *** ***** consensus_7429#0 GAAATATACA----TTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCC 713 consensus_7429#1 NAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATA-AAATGTTTCATAT 585 *** * * * * * * * * ** * * ** * * ** consensus_7429#0 GATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGA 773 consensus_7429#1 GAAATTTCACTTAACAACATATCGAAGTG-ATCTGTAAAACCTAACAAAACATGCT---- 640 ** * *** ** *** ** * * *** * * * * * * * consensus_7429#0 TCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACA 833 consensus_7429#1 ------------------------------------------------------------ consensus_7429#0 TCGATTTCACGACGACCAAGTTCTTTTT 861 consensus_7429#1 ---------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||