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Schistosoma mansoni
cluster # 7429 cluster # 7429       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7429#0 length = 861 sequences # 4  
consensus_7429#1 length = 640 sequences # 1  

consensusID : consensus_7429#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 861
fasta sequence
                              [CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCATGTTGTAGAAGTTTTAAAACACAATCAACTGAATTCACTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAACAATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGCTAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTTCTTTTT]

[-] EMBL CD154050             [CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCATGTTGTAGAAGTTTTAAAACACAATCAACTGAATTCACTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAA                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD181870             [                                                                                 GAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTTCAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTACCCGCCAAATCGATAAGTGAGAATTTACCATGAATTTTTCCCGTAGATTGTTTTTTTAAAATCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAGTTCGAATATGTGCACCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CD168635             [                                                                                                                                                                                                                                                                                                                                                                  CTTCTTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAACAATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGCTAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTTCTTTTT]
[+] EMBL CD195539             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             GGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAAATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTTCACGACGACCAAGTT      ]


>consensus_7429#0 CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTG CACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTT CAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTAC CCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAA TCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAG TTCGAATATGTGCACCATGTTGTAGAAGTTTTAAAACACAATCAACTGAATTCACTTCTT CTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTTGG CTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAACAA TTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGCTA AGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCATTG TATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATACCACGTTGAA ATATACATTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCCGATGTAT CATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGATCAACTT TAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACATCGATTT CACGACGACCAAGTTCTTTTT



consensusID : consensus_7429#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 640
fasta sequence
                              [TTCGACAAGATATTTCCGCTTGTTCCTATATTAGTATTTGGAGGATTCCGAAAGTTGATTTGTGGAGTCACTGTGCTTCCAGCAACAGTACAGTTTGAACTACGAGATGATAACTGTGGTTGATTTGTGTTACCAGTTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCACCCTAAAAATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATATTAAAACAAGGTGGTGACAATTCTTTGACAACAGTAAATCACATAAACATACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATTTAATGTATGTTCACAGCTGGACATACCAGGTGATATCATAGCAATCATACACGTTCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCCTACACACGTANAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATAAAATGTTTCATATGAAATTTCACTTAACAACATATCGAAGTGATCTGTAAAACCTAACAAAACATGCT]

[+] EMBL CD179166             [TTCGACAAGATATTTCCGCTTGTTCCTATATTAGTATTTGGAGGATTCCGAAAGTTGATTTGTGGAGTCACTGTGCTTCCAGCAACAGTACAGTTTGAACTACGAGATGATAACTGTGGTTGATTTGTGTTACCAGTTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCACCCTAAAAATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATATTAAAACAAGGTGGTGACAATTCTTTGACAACAGTAAATCACATAAACATACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATTTAATGTATGTTCACAGCTGGACATACCAGGTGATATCATAGCAATCATACACGTTCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTGCACCACGCCGACCAAGAGCACGAATGCATTCCTACACACGTANAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATAAAATGTTTCATATGAAATTTCACTTAACAACATATCGAAGTGATCTGTAAAACCTAACAAAACATGCT]


>consensus_7429#1 TTCGACAAGATATTTCCGCTTGTTCCTATATTAGTATTTGGAGGATTCCGAAAGTTGATT TGTGGAGTCACTGTGCTTCCAGCAACAGTACAGTTTGAACTACGAGATGATAACTGTGGT TGATTTGTGTTACCAGTTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCT GGTCCAAGTTCTTTCACCCTAAAAATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCT AAATGGATATATATATTAAAACAAGGTGGTGACAATTCTTTGACAACAGTAAATCACATA AACATACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATTT AATGTATGTTCACAGCTGGACATACCAGGTGATATCATAGCAATCATACACGTTCGAGAA CGATCTCCAATANATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGA TGTGCACCACGCCGACCAAGAGCACGAATGCATTCCTACACACGTANAAAAAGAGAGAAA CATTTCCAGCAAAAACACTTTTCGTTGAAATAAAATGTTTCATATGAAATTTCACTTAAC AACATATCGAAGTGATCTGTAAAACCTAACAAAACATGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7429#0      CTCCAATAAATGAATCACGTAGTACTTGAGTTAATTTACTTGCACGAAAAGGTAGATGTG 60
consensus_7429#1      ------------------------------------------------------------
                                                                                  

consensus_7429#0      CACCACGCCGACCAAGAGCACGAATGCATTCTTTTAAAGCTAAAAGACTTTTATTAATTT 120
consensus_7429#1      --------------------------------TTCGA---CAAGATATTTCCGCTTGTTC 25
                                                      **  *    ** * * **    *  ** 

consensus_7429#0      CAGCACCTTCCATTCGAGTATGTCGATCAGAACTACTTGTATCCACACCACGTTCATTAC 180
consensus_7429#1      CTATATTAGTATTTGGAGGATTCCGA--AAGTTGATTTGTGGAGTCACTGTGCTT----- 78
                      *   *       ** *** **  ***  *     * ****     ***   * *      

consensus_7429#0      CCGCCAAATCGATAAGTGAGAATTTACCATGAATTTCTCCCGTAGATTGTTTTTTTAAAA 240
consensus_7429#1      CCAGCAACAGTACAGTTTGAACTACGAGATGA-TAACTGTGGTTGATT-TGTGTTACCAG 136
                      **  ***    * *  *   * *     **** *  **   ** **** * * **   * 

consensus_7429#0      TCAATTGAAAGACAGCATGGGAACGACTAGAATGTTGATTAGCTGATGTTTGACCACTAG 300
consensus_7429#1      TTGCCGGTAGATCAGTATTACTGTTACTTGCTGACAAAGTTCCTGGTCCAAGTTCTTTCA 196
                      *     * *   *** **       *** *       * *  *** *    *  *  *  

consensus_7429#0      TTCGAATATGTGCACCATGTTGTA--GAAGTTTTAAAACACAATCAACTGAATTCACTTC 358
consensus_7429#1      CCCTAAAA-ATAAAATATATTGCAAGGAAGTTTTTAAAAATAGCTAAATGGATATATATA 255
                        * ** *  *  *  ** *** *  ******** *** * *   ** ** **  *  * 

consensus_7429#0      TTCTTCACGTAATCCAACTATTTGTACTTGACCTTTAGCATCTTCCAGAACTCGAAGTTT 418
consensus_7429#1      TTA-------AAACAAGGTGGTGACAATT---CTTTGACAACAGT-AAATCACATAAACA 304
                      **        ** * *  *  *   * **   ****  ** *    * * * *  *    

consensus_7429#0      GGCTTTTTTATTTAACAAATCAAAAACTTTCCCGCTGTATATTTCAAAAAATGTTGCAAC 478
consensus_7429#1      TACGTACACACAGAGCATGAGAAGAATCTTACCGATCAGCGTAACGTAGTGTATT----T 360
                        * *    *   * **    ** **  ** *** *     *  *  *   * **     

consensus_7429#0      AATTCGAAGATTCTCATTCCTATACGTAGTTGTATTCAAATTGAAGACATCAGCAGCTGC 538
consensus_7429#1      AATGT----ATGTTCACAGCTGGACATACCAGG--TGATATCATAGCAATCA-TACACGT 413
                      ***      **  ***   **  ** **   *   * * **   **  ****  *   * 

consensus_7429#0      TAAGGCATAAATTCCATTAGAACAATTTTGTTGACCACGAGCATGGAATTCACCACCCAT 598
consensus_7429#1      TCGAGAACGATCTCCAATANATGAATCACGTAGTACTTGAGTT---AATTTACTTGCACG 470
                      *   * *  *  **** ** *  ***   ** *  *  ***     **** **   *   

consensus_7429#0      TGTATGCGTTTTTCCAGATCCTGTTTGGCCATAAGCAAAGCATGTGGCCATAC-CACGTT 657
consensus_7429#1      AAAAGGTAGATGTGCA---CCACGCCGACCAAGAGCACGA-ATGCATTCCTACACACGTA 526
                         * *    * * **   **     * ***  ****    ***    * *** ***** 

consensus_7429#0      GAAATATACA----TTCCACTAAGGGTTTCGCAGTATACCGATACACAAGTTCATTATCC 713
consensus_7429#1      NAAAAAGAGAGAAACATTTCCAGCAAAAACACTTTTCGTTGAAATA-AAATGTTTCATAT 585
                       *** * * *         * *       * *  *     ** * * ** *   * **  

consensus_7429#0      GATGTATCATCAAATGCATAATCAAAACGGAATTGTTGATTTTCAAGATATTTCGTTAGA 773
consensus_7429#1      GAAATTTCACTTAACAACATATCGAAGTG-ATCTGTAAAACCTAACAAAACATGCT---- 640
                      **  * ***   **      *** **  * *  ***  *   * *  * *  *  *    

consensus_7429#0      TCAACTTTAGTTTTTGGTTCATGGACAAGTACATGTTGTTTATTCGGGACTGTGATCACA 833
consensus_7429#1      ------------------------------------------------------------
                                                                                  

consensus_7429#0      TCGATTTCACGACGACCAAGTTCTTTTT 861
consensus_7429#1      ----------------------------
                                                  




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)