|
These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7434#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1011 fasta sequence
[AGGCCAGAATTCGGCACGAGGTCTGAATCCATTTAGCATCTATACAATCAGATGAAGAATGGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGACGGCAGACCTCGTGAATCATCAGTATATCGTTTTACAATGGTTTGATAAAACAGCTTTCAAATTCCTCCGGTTCCCAGATACAGAGAGGGGTCACTGGCAGCAAATCCTGAAGAACCGCCAGGGTTGTATCATTGGTAACTTGAAAAACAATGGCCAAGGAGAATGGAGCATTCAAGCTATGTCATGTGATGAACCGAAAGAGTTCATTTGCAAAGAAACAAATTCAGATTTCCAAAATAAACCATGGGATACTGAAAGGTCAAGACTTGTTTATATGCCTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCAAAGAAGTCAATTATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGCACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGA-ACTACAAGCAACTACAATAAGTAGATTCGCAAATAAGAATGTGAAATTTGTTATCATCAAATCAGATGAGCCTAAAACAGTGCCCAAAGAAAGTAACAATGAAATAAAGTCGGAGCAAGGTAAAGAAACAAGTCCAGAAAACCAATCTGGACCCGTTACAATTTATCTTCAGGGTGTTTCCGTTCCAGGAAACGAGTTTAAGGAAGGGGCCCAATAATTTTTTTTCTTCCACCTGTTGATCGTTAACAATTAAACTGTGTGATTATGAATACTGTTTAGATGGGATTGGTTTAAATTGAATGTTTACTACGTGATTGGTAAATAAAGAT]
[+] EMBL CD079908 [AGGCCAGAATTCGGCACGAGGTCTGAATCCATTTAGCATCTATACAATCAGATGAAGAATGGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGACGGCAGACCTCGTGAATCATCAGTATATCGTTTTACAATGGTTTGATAAAACAGCTTTCAAATTCCTCCGGTTCCCAGATACAGAGAGGGGTCACTGGCAGCAAATCCTGAAGAACCGCCAGGGTTGTATCATTGGTAACTTGAAAAACAATGGCCAAGGAGAATGGAGCATTCAAGCTATGTCATGTGATGAACCGAAAGAGTTCATTTGCAAAGAAACAAATTCAGATTTCCAAAATAAACCATGGGATACTGAAAGGTCAAGACTTGTTTATATGCCTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCAAAGAAGTCAATTATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGCACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGANACTACAGNNCACTAC ATAAGTAG ]
[+] EMBL CD082862 [ AATGGAGCATTCAAGCTATGTCATGTGATGAACCGAAAGAGTTCATTTGCAAAGAAACAAATTCAGATTTCCAAAATAAACCATGGGATACTGAAAGGTCAAGACTTGTTTATATGCCTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCGAAGAAGTCAATAATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGTACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGA ACTACAAGCAACTACAATAAGTAGATTCGCAAATAAGAATGTGAAATTTGTTATCATCAAATCAGATGAGCCTAAAACAGTGCCCAAAGAAAGTAACAATGAAATAAAGTCGGAGCAAGGTAAAGAAACAAGTCCAGAAAACCAATCTGGACCCGTTACAATTTATCTTCAGGGTGTTTCCGTTCCAGGAAACGAGTTTAAGGAAn ]
[-] EMBL CD076448 [ GACTTGTTTATATGCCTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCGAAGAAGTCAATAATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGTACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGA ACTACAAGCAACTACAATAAGTAGATTCGCAAATAAGAATGTGAAATTTGTTATCATCAAATCAGATGAGCCTAAAACAGTGCCCAAAGAAAGTAACAATGAAATAAAGTCGGAGCAAGGTAAAGAAACAAGTCCAGAAAACCAATCTGGACCCGTTACAATTTATCTTCAGGGTGTTTCCGTTCCAGGAAACGAGTTTAAGGAAGGGGCCCAATAATTTTTTTTCTTCCACCTGTTGATCGTTAACAATTAAACTGTGTGATTATGAATACTGTTTAGATGGGATTGGTTTAAATTGAATGTTTACTACGTGATTGGTAAATAAAGAT]
[-] EMBL CD074105 [ TTGTTTATATGCNTCAAGAAACACCGTTCCAACACTTTAATCAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAAAATACCAACAGGTCCAAAGAAGTCAATTATTGCTCATGTATCTAATGTACAGACAGTAATACCGACAACAGATAGCACAGAACAACAAGTGCACCCAACTCCACCAGTTCAGCCCAAAATCAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAACAAAAAAACCAAATAACATGACTGA ACTACAAGCAACTACAATAAGTAGATTCGCAAATAAGAATGTGAAATTTGTTATAATCAAATCAGATGAGCCAAAAACAGTGCCCAAAGAAAGTAACAATGAAATAAAGTCGGAGCAAGGTAAAGAAACGAGTCCAGAAAACCAATCTGGACCCGTTACAATTTATCTTCAGGGTGTTTCTGTTCCAGGAAACGAGTTTAAGGAAGGGGCCCAATAATTTTTTTTCTTCCACCTGTTGATCGTTAACAATTAAACTGTGTGATTATGAATACTGTTTAGATGGGATTGGTTTAAATTTAATGTTTACTAGGTGATTGGTAAATAAAGAT]
consensusID : consensus_7434#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 400 fasta sequence
[ATACAATAAGTAGTTTAATACTATTACTAAGTCAAATATTATATATTACATGTATTTGGCATCCATCTAATTATCCAGTACATAATAAATATCCATATCAATTCAATACTTATTATCCAGCAAGAAAATATAATGAAGAACAACCTATGGTAGAACAAGTTAAAACAGTTAAATATCATGGTAATACATATAGACAAGTAATGGGTTTGAAATTACCATTTCATCAAGCTGAAAACTATTGTAATCAAGTATTTACATCTGAATCACATTTAGCATCTATACAATCAGATGAAGAATGGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGACGGCAGACCTGGTGAATCATCAGTATATCGTTTTACAATGGTT]
[+] EMBL AI975134 [ATACAATAAGTAGTTTAATACTATTACTAAGTCAAATATTATATATTACATGTATTTGGCATCCATCTAATTATCCAGTACATAATAAATATCCATATCAATTCAATACTTATTATCCAGCAAGAAAATATAATGAAGAACAACCTATGGTAGAACAAGTTAAAACAGTTAAATATCATGGTAATACATATAGACAAGTAATGGGTTTGAAATTACCATTTCATCAAGCTGAAAACTATTGTAATCAAGTATTTACATCTGAATCACATTTAGCATCTATACAATCAGATGAAGAATGGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGACGGCAGACCTGGTGAATCATCAGTATATCGTTTTACAATGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7434#0 AGGCCAGAATTCGGCACGAGGTCTGAATCCATTTAGCATCTATACAATCAGATGAAGAAT 60
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 GGAAAATGTTATCAAAATGTTTTGGGGATAACAGTTTAACTAAAATATGGCTAGGAGGGA 120
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 CGGCAGACCTCGTGAATCATCAGTATATCGTTTTACAATGGTTTGATAAAACAGCTTTCA 180
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 AATTCCTCCGGTTCCCAGATACAGAGAGGGGTCACTGGCAGCAAATCCTGAAGAACCGCC 240
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 AGGGTTGTATCATTGGTAACTTGAAAAACAATGGCCAAGGAGAATGGAGCATTCAAGCTA 300
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 TGTCATGTGATGAACCGAAAGAGTTCATTTGCAAAGAAACAAATTCAGATTTCCAAAATA 360
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 AACCATGGGATACTGAAAGGTCAAGACTTGTTTATATGCCTCAAGAAACACCGTTCCAAC 420
consensus_7434#1 -----------------------------------------------ATACAATA--AGT 11
* ** * *
consensus_7434#0 ACTTTAAT--CAACCCCCAGTCGGTATTCTTTCATTGCATGGAGATATGTATCAACCGAA 478
consensus_7434#1 AGTTTAATACTATTACTAAGTCAAATATTATATATTACATGTATTTG-GCATCCATCTAA 70
* ****** * * **** * * *** **** * * * *** * * **
consensus_7434#0 AATACCAACAGGTCCAAAGAAGTCAATTATTGCTCATGTATCTAATGTACAGACAGTAAT 538
consensus_7434#1 TTATCCAGTACATAATAAATATCCA--TATCAATTCAATACTTATTATCCAG-------- 120
*** * * ** * ** *** * ** ** * * ***
consensus_7434#0 ACCGACAACAGATAGCACAGAACAACAAGTGCACCCAACTCCACCAGTTCAGCCCAAAAT 598
consensus_7434#1 --CAAGAAAATATAATGAAGAACAAC--CTATGGTAGAACAAGTTAAAACAGTTAAATAT 176
* * ** * *** ******** * * * *** ** **
consensus_7434#0 CAATAACAACACAATCACGAGGATCAATATTAGTGAGTCCAAACATTTCATAAAACCAAC 658
consensus_7434#1 CA-TGGTAATACATATA-GACAAGTAATGGGTTTGAAATTAC-CATTTCATCAAGCTGA- 232
** * ** *** * ** * *** *** * ******** ** * *
consensus_7434#0 AAAAAAACCAAATAACATGACTGAACTACAAGCAACTACAATAAGTAGATTCGCAAATAA 718
consensus_7434#1 AAACTATTGTAATCAAGTATTTACATCTGAATCACATTTAGCATCTATACAATCAGATGA 292
*** * *** * * * * ** ** * * * ** * ** ** *
consensus_7434#0 GAATGTGAAATTTGTTATCATCAAATCAGATGAGCCTAAAACAGTGCCCAAAGAAAGTAA 778
consensus_7434#1 AGA-ATGGAAAATGTTATCA--AAATGTTTTGGG--GATAACAGTTTAACTAAAATATGG 347
* ** ** ******** **** ** * * ****** * ** *
consensus_7434#0 CAATGAAATAAAGTCGGAGCAAGGTAAAGAAACAAGTCCAGAAAACCAATCTGGACCCGT 838
consensus_7434#1 CTA-GGAGGGACGGCAGACC----TGGTGAATCA---TCAGTATATCGTTTTACAATGGT 399
* * * * * * * ** * * *** ** *** * * * * * * **
consensus_7434#0 TACAATTTATCTTCAGGGTGTTTCCGTTCCAGGAAACGAGTTTAAGGAAGGGGCCCAATA 898
consensus_7434#1 T----------------------------------------------------------- 400
*
consensus_7434#0 ATTTTTTTTCTTCCACCTGTTGATCGTTAACAATTAAACTGTGTGATTATGAATACTGTT 958
consensus_7434#1 ------------------------------------------------------------
consensus_7434#0 TAGATGGGATTGGTTTAAATTGAATGTTTACTACGTGATTGGTAAATAAAGAT 1011
consensus_7434#1 -----------------------------------------------------
|
| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||