These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7440#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 815 fasta sequence [CGNAGCCAANATTCGGCACGAGGCTGGTTTATATGTCAAAAATAGCAGCATTGTTTTATCTACATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCAAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAACGGGGAAGATCCCCTATGCTGTTAATATTCCACTCGGCGAAGTCGAGGATGCCTTCAAACTGGATGAGAAAAGTTTCTTAGAGAAGTACAAGTTCCAGAAGCCGAATGTGGCGGACAAAAATGTAGTCTTCAGTTGTAGAAGTGGCGTCAGAAGTATGCGGGCTCTCAAAATCGTTCAGGATTTGGGTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTGACTAAAGTAATTTTCCTTACCAAATATCAAATATGTAACAATGTACAACAATAATATCGTAATGTACATTTATTTACAGTCCAAACAATTTGTGTTATTTTCCGTTCACTACAAGACGTTCTTTAGTCTTC-ACATAACATTATTTTGTTTTGGTGAATATTTTATTTTTGACTTCTTACAAATGAGTTGTTTTTGGATGATTTCGAGATATGGGTGTACGCTGTTAAAACTTGTTGTAAGGTAACACCATTTGACTTTGCTTTTGCAGATATGTGTTATTTTTCCAAAAATTTTTAAGAAATGATTATGAATTTGGCACCCAAAGATTTGATTTCCCTTCACTTAACCTGTTTCTTTCAATAAAATTAAAGACTT] [+] EMBL CD083217 [CGNAGCCAANATTCGGCACGAGGCTGGTTTATATGTCAAAAATAGCAGCATTGTTTTATCTACATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCAAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAACGGGGAAGATCCCCTATGCTGTTAATATTCCACTCGGCGAAGTCGAGGATGCCTTCAAACTGGATGAGAAAAGTTTCTTAGAGAAGTACAAGTTCCAGAAGCCGAATGTGGCGGACAAAAATGTAGTCTTCAGTTGTAGAAGTGGCGTCAGAAGTATGCGGGCTCTCAAAATCGTTCAGGATTTGGGTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTGACTAAAGTAATTTTCCTTACCAAATATCAAATATGTAACAATGTACAACAATAATATCGTAATGTACATTTATTTACAGTCCAAACAATTTGTGTTATTTTCCGTTCACTACAAGACGTTCTTTAGTCTTC ACATAACATTATTTTGTTTTGGTGAATATTTTATTTTTGACTTCTTACA ] [+] EMBL CD184142 [ ACGGGGAAGATCCCCTATGCTGTTAATATTCCACTCGGCGAAGTCGAGGATGCCTTCAAACTGGATGAGAAAAGTTTCTTAGAGAAGTACAAGTTCCAGAAGCCGAATGTGGCGGACAAAAATGTAGTCTTCAGTTGTAGAAGTGGCGTCAGAAGTATGCGGGCTCTCAAAATCGTTCAGGATTTGGGTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTGACTAAAGTAATTTTCCTTACCAAATATCAAATATGTAACAATGTACAACAATAATATCGTAATGTA ] [-] EMBL CD076788 [ GTTATGAGAATCCTCTCAATCTTGTTGGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTCACTAAAGTAATTTTCCTTACCAAATATCAAATATGTACCAATGTACACCAATAATATCGTAATGTACATTTATTTCCAGTCCAAACAATTTGTGTTATTTTCCGTTCACTACAAGACGTTTTTTAGTCTTCAACATAACATTATTTTGTTTTGGTGAATATTTTATTTTTGACTTTTTACAAATGAGTTGTTTTTGGATGATTTCGAGATATGGGTGTACGCTGTTAAAACTTGTTGTAAGGTAACACCATTTGACTTTGCTTTTGCAGATATGTGTTATTTTTCCAAAAATTTTTAAGAAATGATTATGAATTTGGCACCCAAAGATTTGATTTCCCTTCACTTAACCTGTTTCTTTCAATAAAATTAAAGACTT] consensusID : consensus_7440#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 269 fasta sequence [TTGGTTTCTTATTTTAATTTCCCGCATCCATCCCAATCTCAGGTTTTTGTTTTCGTCAATATGATGGGGCGGGGAAGTGTTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATCGCATCGTATATAAGACCCTTTGACCACATATCTAGATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCCAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAAC] [+] EMBL CD097874 [TTGGTTTCTTATTTTAATTTCCCGCATCCATCCCAATCTCAGGTTTTTGTTTTCGTCAATATGATGGGGCGGGGAAGTGTTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATCGCATCGTATATAAGACCCTTTGACCACATATCTAGATGGTTTACGTCGGAAAAATCGGTGGACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCCAAGGACCTTAAATTGATAGATGTTCGAGAACCTGACGAGTTGGAACAAAC] consensusID : consensus_7440#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [TCGAGGCGCAGAATTGGCACGAGGTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATCGCATCGTATATAAGACCCTTTGACCACAGTAAGTAAATCGGTGTCGCGATGCGATCCATACATCTTCGAACCGTTTTCTTGCAAAGTTTTCTAACTGTATCTAGCCGTTCTCGTGTTGCTGCTCCTGGTTTATATGTCAAAATAGCAGCATTGTTTGTA] [+] EMBL CD078070 [TCGAGGCGCAGAATTGGCACGAGGTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATCGCATCGTATATAAGACCCTTTGACCACAGTAAGTAAATCGGTGTCGCGATGCGATCCATACATCTTCGAACCGTTTTCTTGCAAAGTTTTCTAACTGTATCTAGCCGTTCTCGTGTTGCTGCTCCTGGTTTATATGTCAAAATAGCAGCATTGTTTGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7440#0 ------------------------------------------------------------ consensus_7440#1 TTGGTTTCTTATTTTAATTTCCCGCATCCATCCCAATCTCAGGTTTTTGTTTTCGTCAAT 60 consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 --------------------------CGNAGCCAANATTCGGCACGAGGCTGGTTTA--T 32 consensus_7440#1 ATGATGGGGCGGGGAAGTGTTTTGATTTGGTTTTTGGTTCTAACCGTCGCTGTTCTGATC 120 consensus_7440#2 -------------------------TCGAGGCGCAGAATTGGCACGAGGTTTGATTTGGT 35 * ** * * * consensus_7440#0 ATGTCAAAAATAGCAGCATTGTTT----TATCTACATGGTTTACGTCGGAAAAATCGGTG 88 consensus_7440#1 GCATCGTATATAAGACCCTTTGACCACATATCTAGATGGTTTACGTCGGAAAAATCGGTG 180 consensus_7440#2 TTTTGGTTCTAACCGTCGCTGTTC----TGATCGCATCGTATAT-----AAGACCCTTTG 86 * * * * * ** ** ** ** * * ** consensus_7440#0 GACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCAAAGGACCTTAAATTGATAGAT 148 consensus_7440#1 GACATAGATGTGAAAAGGTTAAAGGAGATGATGAAATCCAAGGACCTTAAATTGATAGAT 240 consensus_7440#2 ACCACAG---TAAGTAAATCGGTGTCG-CGATGCGATCCATACATCTTCGAACCGT--TT 140 ** ** * * * * * * **** *** * * *** * * * consensus_7440#0 GTTCGAGAACCTGACGAGTTGGAACAAACGGGGAAGATCCCCTATGCTGTTAATATTCCA 208 consensus_7440#1 GTTCGAGAACCTGACGAGTTGGAACAAAC------------------------------- 269 consensus_7440#2 TCTTGCAAAGTTTTCTAACTGTATCTAGCCG----TTCTCGTGTTGCTGCTCCTGGTTTA 196 * * ** * * * ** * * * * consensus_7440#0 CTCGGCGAAGTCGAGGATGCCTTCAAACTGGATGAGAAAAGTTTCTTAGAGAAGTACAAG 268 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 TATGTCAAAATAGCAGCATTGTTTGTA--------------------------------- 223 consensus_7440#0 TTCCAGAAGCCGAATGTGGCGGACAAAAATGTAGTCTTCAGTTGTAGAAGTGGCGTCAGA 328 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 AGTATGCGGGCTCTCAAAATCGTTCAGGATTTGGGTTATGAGAATCCTCTCAATCTTGTT 388 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 GGTGGATACAATGCATGGGCCAAAGAAAATGCAGGGGGGTAGGATGTTATTGACTAAAGT 448 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 AATTTTCCTTACCAAATATCAAATATGTAACAATGTACAACAATAATATCGTAATGTACA 508 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 TTTATTTACAGTCCAAACAATTTGTGTTATTTTCCGTTCACTACAAGACGTTCTTTAGTC 568 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 TTCACATAACATTATTTTGTTTTGGTGAATATTTTATTTTTGACTTCTTACAAATGAGTT 628 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 GTTTTTGGATGATTTCGAGATATGGGTGTACGCTGTTAAAACTTGTTGTAAGGTAACACC 688 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 ATTTGACTTTGCTTTTGCAGATATGTGTTATTTTTCCAAAAATTTTTAAGAAATGATTAT 748 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 GAATTTGGCACCCAAAGATTTGATTTCCCTTCACTTAACCTGTTTCTTTCAATAAAATTA 808 consensus_7440#1 ------------------------------------------------------------ consensus_7440#2 ------------------------------------------------------------ consensus_7440#0 AAGACTT 815 consensus_7440#1 ------- consensus_7440#2 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||