cluster # 7444

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Schistosoma mansoni
cluster # 7444 cluster # 7444 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7444#0 length = 856 sequences # 3

consensus_7444#1 length = 430 sequences # 2

consensusID : consensus_7444#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 856
fasta sequence

                              [ACAATTATTTGAAATGATTTTCACTACTCATAACATCTAATGCTTCCAAGAGAACCTCCGTTGGTCCCTTTGAAACTTCAACAGCATCTTCATCATTAGTATAATTATTTGGAACATGTTCATATGCATCAATAACAGGAGGTTCATCCATGTGTACAGATTCACGTGGCGAACGAACAGGTATCTTTATTGAAGGTTCTTCAGAACTTTGAGAAGTATCACACCAATTACCATCTACTAGTTGACTAGTCAAAACTGGAATATCTTGATTCATTGTGGAATTCACATCTTTTTCTTCAGTGGTATTATTGTTACTTTCATCATTATCATCGTCATAGTCATCATCAAGCACATTTGAAACTTCCGGACCATTATAAGGACGTAATTTAGGTAAACGAGGTGATAATACTGCTGATTTAGTGGTCCAACCAACTGGACGCTGTGATAAATGTGATCCTAACTTAAGAGGACTTCCAACTGTTGGTTTTGTACGTAAATAAAGTTTTAATGGATGTTTATCAGGAAAACGTTCACTAAGAAGTCGAATAAAATTTTTACACA-TGGAAAGTTGCTTCCAACGTACAGTTAGATCGTGAGTAGCACGTTGATTGCAAGTAGGACAAAAATATTCTTT-AGAAAGCTGGAAATGATGATGAATCCCGACGCATATCTGATGATACCATCGACAACACGCCTCACACTGTA-CCATTTTACAGTACCAGTTTGTGNATGTAGACATGGTCCTGCTGGGCACTCGTCATCATCGTAATTAGACGCTTGATCATCTGTAGCACAATCTACATTCTCATCTTCACTTTCATCATTATTTAACATTGTTTTTGTTGCTACCATTGTT]

[+] EMBL CD129462             [ACAATTATTTGAAATGATTTTCACTACTCATAACATCTAATGCTTCCAAGAGAACCTCCGTTGGTCCCTTTGAAACTTCAACAGCATCTTCATCATTAGTATAATTATTTGGAACATGTTCATATGCATCAATAACAGGAGGTTCATCCATGTGTACAGATTCACGTGGCGAACGAACAGGTATCTTTATTGAAGGTTCTTCAGAACTTTGAGAAGTATCACACCAATTACCATCTACTAGTTGACTAGTCAAAACTGGAATATCTTGATTCATTGTGGAATTCACATCTTTTTCTTCAGTGGTATTATTGTTACTTTCATCATTATCATCGTCATAGTCATCATCAAGCACATTTGAAACTTCCGGACCATTATAAGGACGTAATTTAGGTAAACGAGGTGATAATACTGCTGATTTAGTGGTCCAACCAACTGGACGCTGTGATAAATGTGATCCTAACTTAAGAGGACTTC                                                                                                                                                                                                                                                                                                                                                                                                 ]
[-] EMBL CD132021             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGGACGCTGTGATAAATGTGATCCTAACTTAAGAGGACTTCCAACTGTTGGTTTTGTACGTAAATAAAGTTTTAATGGATGTTTATCAGGAAAACGTTCACTAAGAAGTCGAATAAAATTTTTACACA TGGAAAGTTGCTTCCAACGTACAGTTAGATCGTGAGTAGCACGTTGATTGCAAGTAGGACAAAAATATTCTTTAAGAAAGCTGGAAATGATGATGAATCCCGACGCATATCTGATGATACCATCGACAACACGCCTCACACTGTA CCATTTTACAGTACCAGTTTGTGNATGTAGACATGGTCCTGCTGGGCACTCGTCATCATCGTAATTAGACGCTTGATCATCTGTAGCACAATCTACATTCTCATCTTCACTTTCATCATTATTTAACATTGTTTTTGTTGCTACCATTGTT]
[-] EMBL CD131958             [                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGGACGCTGTGATAAATGTGATCCTAACTTAAGAGGACTTCCAGCTGTTGCTTTTGTACGTAAATGAAGTTTTGATGGATGTTTATCAGGAAAACGTTCACTAGGAAGTCGACTAAAACTTTTAC CAGTGGAAAGTTGCTTCCGACGTACAGTGAGATCGTGAGTAGCACGTTGATGGCATGTAGGACAAAAATATACTTT AGGAAGCTGGAAATGATGATGAATCCCGACGCATATCTGATGATACCATCGACAACACGCCTCACACTGTACCCATTTTACAGTACCAGTTTGTGGATGTAGACATGGTCCTGCTGGGCACTCGTCATCTTCGTAATTAGACGCTTGATCATCTGTAGCACAATCTACATTCTCATCTTCACTTTCATCATTATTTAATATTGTTTTTGTTGCTACCATTGTT]




>consensus_7444#0
ACAATTATTTGAAATGATTTTCACTACTCATAACATCTAATGCTTCCAAGAGAACCTCCG
TTGGTCCCTTTGAAACTTCAACAGCATCTTCATCATTAGTATAATTATTTGGAACATGTT
CATATGCATCAATAACAGGAGGTTCATCCATGTGTACAGATTCACGTGGCGAACGAACAG
GTATCTTTATTGAAGGTTCTTCAGAACTTTGAGAAGTATCACACCAATTACCATCTACTA
GTTGACTAGTCAAAACTGGAATATCTTGATTCATTGTGGAATTCACATCTTTTTCTTCAG
TGGTATTATTGTTACTTTCATCATTATCATCGTCATAGTCATCATCAAGCACATTTGAAA
CTTCCGGACCATTATAAGGACGTAATTTAGGTAAACGAGGTGATAATACTGCTGATTTAG
TGGTCCAACCAACTGGACGCTGTGATAAATGTGATCCTAACTTAAGAGGACTTCCAACTG
TTGGTTTTGTACGTAAATAAAGTTTTAATGGATGTTTATCAGGAAAACGTTCACTAAGAA
GTCGAATAAAATTTTTACACATGGAAAGTTGCTTCCAACGTACAGTTAGATCGTGAGTAG
CACGTTGATTGCAAGTAGGACAAAAATATTCTTTAGAAAGCTGGAAATGATGATGAATCC
CGACGCATATCTGATGATACCATCGACAACACGCCTCACACTGTACCATTTTACAGTACC
AGTTTGTGNATGTAGACATGGTCCTGCTGGGCACTCGTCATCATCGTAATTAGACGCTTG
ATCATCTGTAGCACAATCTACATTCTCATCTTCACTTTCATCATTATTTAACATTGTTTT
TGTTGCTACCATTGTT

consensusID : consensus_7444#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 430
fasta sequence

                              [TGGCCGCTGTGATAAATGTGGTCGTACTTTAAAAGGACTTCCAGCTGTTGCTTTTGAAGGTAAATAAAGTTTTAATGAATGTTAATCAGGAAAACGGTCCACTAGGAATTCGATTAAATCTTTAACCAGTGGAAAGTTGCTTCCGACGTACAGTGAGATCGTGAGTAGCACGTTAATGGCATGTAGGACAAAAATATACTTTAGGAAGCTGGAAATGATGATGAATCCCGACGCATATCTGATGATACCATCGACAACACGCCTCACGCTGTACCCATTTTACAGTACCAGTTTGTGGATGTAGACATGGTCCTGCTGGGCACTCGTCATCTTCGTAATTAGACGCTTGATCATCTGTAGCACAATCTACATTCTCATCTTCACTTTCATCATTATTTAATACCCCCTCCCGTTGCTACCATTGTTGATC]

[-] EMBL CD131945             [TGGCCGCTGTGATAAATGTGGTCGTACTTTAAAAGGACTTCCAGCTGTTGCTTTTGAAGGTAAATAAAGTTTTAATGAATGTTAATCAGGAAAACGGTCCACTAGGAATTCGATTAAATCTTTAACCAGTGGAAAGTTGCTTCCGACGTACAGTGAGATCGTGAGTAGCACGTTAATGGCATGTAGGACAAAAATATACTTTAGGAAGCTGGAAATGATGATGAATCCCGACGCATATCTGATGATACCATCGACAACACGCCTCACGCTGTACCCATTTTACAGTACCAGTTTGTGGATGTAGACATGGTCCTGCTGGGCACTCGTCATCTTCGTAATTAGACGCTTGATCATCTGTAGCACAATCTACATTCTCATCTTCACTTTCATCATTATTTAATACCCCCTCCCGTTGCTACCATTGTTGATC]
[-] EMBL CD168134             [                                                                                                                                                                                                      CTTTAGGAAGCTGGAAATGATGATGAATCCCGACGCATATCTGATGATACCATCGACAACACGCCTCACACTGTACCCATTTTACAGTACCAGTTTGTGGATG                                                                                                                                 ]




>consensus_7444#1
TGGCCGCTGTGATAAATGTGGTCGTACTTTAAAAGGACTTCCAGCTGTTGCTTTTGAAGG
TAAATAAAGTTTTAATGAATGTTAATCAGGAAAACGGTCCACTAGGAATTCGATTAAATC
TTTAACCAGTGGAAAGTTGCTTCCGACGTACAGTGAGATCGTGAGTAGCACGTTAATGGC
ATGTAGGACAAAAATATACTTTAGGAAGCTGGAAATGATGATGAATCCCGACGCATATCT
GATGATACCATCGACAACACGCCTCACGCTGTACCCATTTTACAGTACCAGTTTGTGGAT
GTAGACATGGTCCTGCTGGGCACTCGTCATCTTCGTAATTAGACGCTTGATCATCTGTAG
CACAATCTACATTCTCATCTTCACTTTCATCATTATTTAATACCCCCTCCCGTTGCTACC
ATTGTTGATC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7444#0      ACAATTATTTGAAATGATTTTCACTACTCATAACATCTAATGCTTCCAAGAGAACCTCCG 60
consensus_7444#1      ------------------------------------------------------------
                                                                                  

consensus_7444#0      TTGGTCCCTTTGAAACTTCAACAGCATCTTCATCATTAGTATAATTATTTGGAACATGTT 120
consensus_7444#1      ------------------------------------------------------------
                                                                                  

consensus_7444#0      CATATGCATCAATAACAGGAGGTTCATCCATGTGTACAGATTCACGTGGCGAACGAACAG 180
consensus_7444#1      ------------------------------------------------------------
                                                                                  

consensus_7444#0      GTATCTTTATTGAAGGTTCTTCAGAACTTTGAGAAGTATCACACCAATTACCATCTACTA 240
consensus_7444#1      ------------------------------------------------------------
                                                                                  

consensus_7444#0      GTTGACTAGTCAAAACTGGAATATCTTGATTCATTGTGGAATTCACATCTTTTTCTTCAG 300
consensus_7444#1      ------------------------------------------------------------
                                                                                  

consensus_7444#0      TGGTATTATTGTTACTTTCATCATTATCATCGTCATAGTCATCATCAAGCACATTTGAAA 360
consensus_7444#1      ------------------------------------------------------------
                                                                                  

consensus_7444#0      CTTCCGGACCATTATAAGGACGTAATTTAGGTAAACGAGGTGATAATACTGCTGATTTAG 420
consensus_7444#1      ------------------------------------------------------------
                                                                                  

consensus_7444#0      TGGTCCAACCAACTGGACGCTGTGATAAATGTGATCCTAACTTAAGAGGACTTCCAACTG 480
consensus_7444#1      -------------TGGCCGCTGTGATAAATGTGGTCGTACTTTAAAAGGACTTCCAGCTG 47
                                   *** **************** ** **  **** ********** ***

consensus_7444#0      TTGGTTTTGTACGTAAATAAAGTTTTAATGGATGTTTATCAGGAAAACG-TTCACTAAGA 539
consensus_7444#1      TTGCTTTTGAAGGTAAATAAAGTTTTAATGAATGTTAATCAGGAAAACGGTCCACTAGGA 107
                      *** ***** * ****************** ***** ************ * ***** **

consensus_7444#0      AGTCGAATAAAATTTTTACACATGGAAAGTTGCTTCCAACGTACAGTTAGATCGTGAGTA 599
consensus_7444#1      ATTCGATTAAATCTTTAACCAGTGGAAAGTTGCTTCCGACGTACAGTGAGATCGTGAGTA 167
                      * **** ****  *** **   *************** ********* ************

consensus_7444#0      GCACGTTGATTGCAAGTAGGACAAAAATATTCTTTAGAAAGCTGGAAATGATGATGAATC 659
consensus_7444#1      GCACGTTAATGGCATGTAGGACAAAAATATACTTTAGGAAGCTGGAAATGATGATGAATC 227
                      ******* ** *** *************** ****** **********************

consensus_7444#0      CCGACGCATATCTGATGATACCATCGACAACACGCCTCACACTGTACC-ATTTTACAGTA 718
consensus_7444#1      CCGACGCATATCTGATGATACCATCGACAACACGCCTCACGCTGTACCCATTTTACAGTA 287
                      **************************************** ******* ***********

consensus_7444#0      CCAGTTTGTGNATGTAGACATGGTCCTGCTGGGCACTCGTCATCATCGTAATTAGACGCT 778
consensus_7444#1      CCAGTTTGTGGATGTAGACATGGTCCTGCTGGGCACTCGTCATCTTCGTAATTAGACGCT 347
                      ********** ********************************* ***************

consensus_7444#0      TGATCATCTGTAGCACAATCTACATTCTCATCTTCACTTTCATCATTATTTAACATTGTT 838
consensus_7444#1      TGATCATCTGTAGCACAATCTACATTCTCATCTTCACTTTCATCATTATTTAATACCCCC 407
                      ***************************************************** *     

consensus_7444#0      TTT-GTTGCTACCATTGTT---- 856
consensus_7444#1      TCCCGTTGCTACCATTGTTGATC 430
                      *   ***************