These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7445#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 796 fasta sequence [AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTACAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAAGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACGATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTGTTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCACAGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATACACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACACTTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATCCAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT] [-] EMBL CD124955 [AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTACAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAAGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCGATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAAC ] [-] EMBL CD124870 [AGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACAGTTGCTTGTTTGCAAAGATTTACTCAACATAGTTCAGCTAGTGGTAAAGCATTACATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGCCTAACCGAAGCGGTGAAAAGAAGAGGGGAGATACTCTAAGTGGACTAGATGAAAATTTCCAAGGTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATCCATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAAC ] [+] EMBL CD092178 [ ATATTCAATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCCTTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACGATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTGTTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCACAGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATACACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACACTTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATCCAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT] consensusID : consensus_7445#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 438 fasta sequence [GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCTAGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGAATTGTTTTATTTCGGTCAATATTCCACCATGACAGTATAGTAACGTTTAAGATTATTACTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGATTGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAGAATAATTTCAGCACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTGATTATCTTTCACTAATCTGAATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGGTTTTAATCACGAAGTGATTTGGTTAACTGTT] [+] EMBL CD197828 [GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCTAGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGAATTGTTTTATTTCGGTCAATATTCCACCATGACAGTATAGTAACGTTTAAGATTATTACTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGATTGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAGAATAATTTCAGCACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTGATTATCTTTCACTAATCTGAATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGGTTTTAATCACGAAGTGATTTGGTTAACTGTT] consensusID : consensus_7445#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 397 fasta sequence [GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTGAATGGCATCATGCAGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTGTTAAACCGTAAAATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGGTATGTATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGTGTAAAATTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACTCCATCTGGGGAATTGTTAAATTATGAAATTTTTGGTCAGCTCT] [-] EMBL CD139242 [GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTGAATGGCATCATGCAGAAGTTGGTTTAGAAAATATAGAAAAGTTTCAAGGAGCTTATGTTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTGTTAAACCGTAAAATAGAAGTACTTATGTACAACAAACAAGACTAGTTCGCCAGGTATGTATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGTGTAAAATTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACTCCATCTGGGGAATTGTTAAATTATGAAATTTTTGGTCAGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7445#0 ------------------------------------------------------------ consensus_7445#2 GGAATTTATCTATCGAGAATAATTCAAATTTGAATGGTACTGTTATTCCTACTGCACCTG 60 consensus_7445#1 -----GAATAAACTTTGCAGATGTTGATTGAATATTATCGTCTGGTTTCATTTCATATCT 55 consensus_7445#0 -------------AGAAGTTGGTTTAGAAAAT-ATAGAAAAGTTTCAAGG--AGCTTATG 44 consensus_7445#2 AATGGCATCATGCAGAAGTTGGTTTAGAAAAT-ATAGAAAAGTTTCAAGG--AGCTTATG 117 consensus_7445#1 AGTAATATTGAGTAGATATAATTTTTAATGATCATTAAAGAATGATAAAGTGAGCGAAGA 115 *** * *** * ** ** ** * * ** * *** * consensus_7445#0 TTCGTGGTCGTACAGTTGCTTGTTTGCAAAGA-TTTACTCAACATAG--TACAGCTAGTG 101 consensus_7445#2 TTCGTGGTCGTACACTTGCTTGTGTGCAAAGAGTTTACTTCAAATTGATTTAGGTTATTG 177 consensus_7445#1 ATTGTTTTATTTCGGTCAATATTCCACCATGA--CAGTATAGTAACGTTTAAGATTATTA 173 * ** * * * * * * * * ** * * * ** * consensus_7445#0 GTAAAGCATTACATAGAAGTACTTATGTA-CAACAAACAAGACTAGTTCGCCAGCCTAAC 160 consensus_7445#2 TTAAACCGTAAAATAGAAGTACTTATGTA-CAACAAACAAGACTAGTTCGCCAGGTATGT 236 consensus_7445#1 CTAGGTAACGATCAAGTAATGATAATGAGGTAATGAATAATACGTAGATGGTATTATGAT 233 ** * ** * * * *** ** ** ** ** * * consensus_7445#0 CGAAGCGGTGAAAAGAAGAAGGGA-GATACTCTAAGTGGACTAG-ATGAAAATTTCCAAG 218 consensus_7445#2 ATATTTTATGTAAGCTAAATATTATGTTTCTCTTTGTTAAATACTATTAGTTTTTCCAGT 296 consensus_7445#1 TGGTAAATTTATTTCAAAGTAGTAAATAGTCATGAATCCATTAG----AATAATTTCAGC 289 * * * * * * ** * ** ** consensus_7445#0 GTAAAGGTTTTGAACAAGATGAACATACCTTTATCTCGACCCCAATACATCTTACTGATC 278 consensus_7445#2 GTAAAA--TTTAACTTCGTTACAGGAATATTTAGTACTTTATTTATTTATTTCATGGACT 354 consensus_7445#1 ACAAAATTTGAAGTTTTACAACAGTGTTGTTTATCAATACACACCTTAATTGCAACGGTG 349 *** * * **** * ** * * consensus_7445#0 CATGTGTATTTAATAGTGAACAGTTAACCAAATATGAAATGAAACCAGACGATAATATTC 338 consensus_7445#2 C-CATCTGGGGAATTGTTAA---ATTATGAAATTTTTGGTCAGCTCT------------- 397 consensus_7445#1 ATTATCT-TTCACTAATCTG-AATCAAGAATTTTTTCGATCCAGTGTATTATTACAGAGG 407 * * * * * * * * * * consensus_7445#0 AATCAACATCTGCAAAGTTTATTCAATGTTCAAATGATCGCCTACAACTATTACAATCCC 398 consensus_7445#2 ------------------------------------------------------------ consensus_7445#1 TTTTAATCACGAAGTGATTTGGTTAACTGTT----------------------------- 438 consensus_7445#0 TTTGTCCATCCGCGGCTGCTGCAACCATTCTGCTGGGTAAACCTGTACGTGATCCACACG 458 consensus_7445#2 ------------------------------------------------------------ consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 ATAATGATGATATTAAACAAAATATTTTGATTAAATCTAATGATCTCGATGAAACTCGTG 518 consensus_7445#2 ------------------------------------------------------------ consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 TTCTGGTAACAGCGAACTCATGGTGTCCTATGTCATTAAGAACAAAAGATCCTGAATCAC 578 consensus_7445#2 ------------------------------------------------------------ consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 AGTTAATATTCAATTCCATTCATAAAGATAATAATAGCAATACTCCTACAAAAACAAATA 638 consensus_7445#2 ------------------------------------------------------------ consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 CACCAAAACATTCACCCCCGTCTGTGAGCGTGCCAGAACCTACAATACGCGGTGGAACAC 698 consensus_7445#2 ------------------------------------------------------------ consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 TTGATGGATTGCTTATATATGCACTGAACTTATTACAGATGCCTATACCAACTAGTCATC 758 consensus_7445#2 ------------------------------------------------------------ consensus_7445#1 ------------------------------------------------------------ consensus_7445#0 CAGATTATTTATTTCCTGATGTAATTCGTTTAATTTAT 796 consensus_7445#2 -------------------------------------- consensus_7445#1 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||