These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7447#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TCCAGGCCAAGAATTTGGCACGAGGGGCTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGCGTAATGACGGACTATCCCAGAAAACTAACTGAATTTCTGAAGAAGCATCCTGAGTATCCGAGAGTTTTTTAATTCATTTCATGTGCTCGCTTTAATAAAACATTGGACTTCACTTCTGTTTATATTCTATATCTTCTGAATTTTTGAATTAAATTAAAATCGTG] [+] EMBL CD080847 [TCCAGGCCAAGAATTTGGCACGAGGGGCTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGCGTAATGACGGACTATCCCAGAAAACTAACTGAATTTCTGAAGAAGCATCCTGAGTATCCGAGAGTTTTTTAATTCATTTCATGTGCTCGCTTTAATAAAACATTGGACTTCACTTCTGTTTATATTCTATATCTTCTGAATTTTTGAATTAAATTAAAATCGTG] consensusID : consensus_7447#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [AGCCTTGAGATGAGTGACGGTCTGGAGATAACACATGATCAGTGTATTAATATCAGTTAAGTGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGC] [-] EMBL CD201968 [AGCCTTGAGATGAGTGACGGTCTGGAGATAACACATGATCAGTGTATTAATATCAGTTAAGTGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGC] consensusID : consensus_7447#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 252 fasta sequence [CCTCAAGGTCCCACTGTGCCAGACAGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTA] [-] EMBL CD188816 [CCTCAAGGTCCCACTGTGCCAGACAGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTA] consensusID : consensus_7447#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 251 fasta sequence [TCTTGTGATTTGTTGCATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTCTAGTTTCTGTTATTCGATCTAATGAGT] [-] EMBL CD199931 [TCTTGTGATTTGTTGCATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTCTAGTTTCTGTTATTCGATCTAATGAGT] [-] EMBL CD200002 [cCTTGTGATTTGTTGCATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAGTGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7447#1 AGCCTTGAGATGAGTGACGGTCTGGAGATAACACATGATCAGTGTATTAATATCAGTTAA 60 consensus_7447#3 --------------------------------------------TCTTGTGATTTGTTGC 16 consensus_7447#0 -------------------------------------TCCAGGCCAAGAATTTGGCACGA 23 consensus_7447#2 ------------------------------------CCTCAAGGTCCCACTGTGCCA-GA 23 * consensus_7447#1 GTG-TTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATG 119 consensus_7447#3 ATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATG 76 consensus_7447#0 GGGGCTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATG 83 consensus_7447#2 CAGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATG 83 * ******************************************************* consensus_7447#1 AATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCG 179 consensus_7447#3 AATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCG 136 consensus_7447#0 AATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCG 143 consensus_7447#2 AATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCG 143 ************************************************************ consensus_7447#1 TTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCC 239 consensus_7447#3 TTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCC 196 consensus_7447#0 TTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCC 203 consensus_7447#2 TTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCC 203 ************************************************************ consensus_7447#1 ATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCC 299 consensus_7447#3 ATAAAATATGATTGTTTTGAACTTCCTCTAGTTTCTGTTATTCGATCTAATGAGT----- 251 consensus_7447#0 ATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCC 263 consensus_7447#2 ATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTA----------- 252 *************************** ********************* consensus_7447#1 AGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTA 359 consensus_7447#3 ------------------------------------------------------------ consensus_7447#0 AGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTA 323 consensus_7447#2 ------------------------------------------------------------ consensus_7447#1 TTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGG 419 consensus_7447#3 ------------------------------------------------------------ consensus_7447#0 TTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGG 383 consensus_7447#2 ------------------------------------------------------------ consensus_7447#1 GTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGC------ 473 consensus_7447#3 ------------------------------------------------------------ consensus_7447#0 GTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGCGTAATG 443 consensus_7447#2 ------------------------------------------------------------ consensus_7447#1 ------------------------------------------------------------ consensus_7447#3 ------------------------------------------------------------ consensus_7447#0 ACGGACTATCCCAGAAAACTAACTGAATTTCTGAAGAAGCATCCTGAGTATCCGAGAGTT 503 consensus_7447#2 ------------------------------------------------------------ consensus_7447#1 ------------------------------------------------------------ consensus_7447#3 ------------------------------------------------------------ consensus_7447#0 TTTTAATTCATTTCATGTGCTCGCTTTAATAAAACATTGGACTTCACTTCTGTTTATATT 563 consensus_7447#2 ------------------------------------------------------------ consensus_7447#1 -------------------------------------- consensus_7447#3 -------------------------------------- consensus_7447#0 CTATATCTTCTGAATTTTTGAATTAAATTAAAATCGTG 601 consensus_7447#2 -------------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||