cluster # 7447

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Schistosoma mansoni
cluster # 7447 cluster # 7447 Sequences # 5 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7447#0 length = 601 sequences # 1
consensus_7447#1 length = 473 sequences # 1

consensus_7447#2 length = 252 sequences # 1
consensus_7447#3 length = 251 sequences # 2

consensusID : consensus_7447#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [TCCAGGCCAAGAATTTGGCACGAGGGGCTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGCGTAATGACGGACTATCCCAGAAAACTAACTGAATTTCTGAAGAAGCATCCTGAGTATCCGAGAGTTTTTTAATTCATTTCATGTGCTCGCTTTAATAAAACATTGGACTTCACTTCTGTTTATATTCTATATCTTCTGAATTTTTGAATTAAATTAAAATCGTG]

[+] EMBL CD080847             [TCCAGGCCAAGAATTTGGCACGAGGGGCTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGCGTAATGACGGACTATCCCAGAAAACTAACTGAATTTCTGAAGAAGCATCCTGAGTATCCGAGAGTTTTTTAATTCATTTCATGTGCTCGCTTTAATAAAACATTGGACTTCACTTCTGTTTATATTCTATATCTTCTGAATTTTTGAATTAAATTAAAATCGTG]




>consensus_7447#0
TCCAGGCCAAGAATTTGGCACGAGGGGCTGCTCGCCTTATTGAAACTTACAATCGAGAGC
ATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATA
AAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTG
TGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTG
TTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAG
CCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGC
GTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTG
AACTTGGAGCTTCAGGCGTAATGACGGACTATCCCAGAAAACTAACTGAATTTCTGAAGA
AGCATCCTGAGTATCCGAGAGTTTTTTAATTCATTTCATGTGCTCGCTTTAATAAAACAT
TGGACTTCACTTCTGTTTATATTCTATATCTTCTGAATTTTTGAATTAAATTAAAATCGT
G

consensusID : consensus_7447#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 473
fasta sequence

                              [AGCCTTGAGATGAGTGACGGTCTGGAGATAACACATGATCAGTGTATTAATATCAGTTAAGTGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGC]

[-] EMBL CD201968             [AGCCTTGAGATGAGTGACGGTCTGGAGATAACACATGATCAGTGTATTAATATCAGTTAAGTGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCAGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTATTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGGTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGC]




>consensus_7447#1
AGCCTTGAGATGAGTGACGGTCTGGAGATAACACATGATCAGTGTATTAATATCAGTTAA
GTGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGA
ATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGT
TTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCA
TAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCCA
GACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTAT
TATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGGG
TGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGC

consensusID : consensus_7447#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 252
fasta sequence

                              [CCTCAAGGTCCCACTGTGCCAGACAGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTA]

[-] EMBL CD188816             [CCTCAAGGTCCCACTGTGCCAGACAGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTA]




>consensus_7447#2
CCTCAAGGTCCCACTGTGCCAGACAGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGC
ATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATA
AAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTG
TGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTG
TTATTCGATCTA

consensusID : consensus_7447#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 251
fasta sequence

                              [TCTTGTGATTTGTTGCATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTCTAGTTTCTGTTATTCGATCTAATGAGT]

[-] EMBL CD199931             [TCTTGTGATTTGTTGCATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTCTAGTTTCTGTTATTCGATCTAATGAGT]
[-] EMBL CD200002             [cCTTGTGATTTGTTGCATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCGTTTACGTATGTAATATGGATAGTGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGT]




>consensus_7447#3
TCTTGTGATTTGTTGCATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAAC
TGTATGGGGGTCAATGAATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATAT
TCTCACTTTTGCACCGTTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACT
ACTCCCTTTAGTACCCATAAAATATGATTGTTTTGAACTTCCTCTAGTTTCTGTTATTCG
ATCTAATGAGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7447#1      AGCCTTGAGATGAGTGACGGTCTGGAGATAACACATGATCAGTGTATTAATATCAGTTAA 60
consensus_7447#3      --------------------------------------------TCTTGTGATTTGTTGC 16
consensus_7447#0      -------------------------------------TCCAGGCCAAGAATTTGGCACGA 23
consensus_7447#2      ------------------------------------CCTCAAGGTCCCACTGTGCCA-GA 23
                                                                          *       

consensus_7447#1      GTG-TTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATG 119
consensus_7447#3      ATGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATG 76
consensus_7447#0      GGGGCTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATG 83
consensus_7447#2      CAGGTTGCTCGCCTTATTGAAACTTACAATCGAGAGCATATAACTGTATGGGGGTCAATG 83
                        *  *******************************************************

consensus_7447#1      AATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCG 179
consensus_7447#3      AATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCG 136
consensus_7447#0      AATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCG 143
consensus_7447#2      AATTCGAAAGTATCGAAAAAATGTGAATTACGCAATAAAAATATTCTCACTTTTGCACCG 143
                      ************************************************************

consensus_7447#1      TTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCC 239
consensus_7447#3      TTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCC 196
consensus_7447#0      TTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCC 203
consensus_7447#2      TTTACGTATGTAATATGGATAATGGCATGCTATGTTGTGGGACTACTCCCTTTAGTACCC 203
                      ************************************************************

consensus_7447#1      ATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCC 299
consensus_7447#3      ATAAAATATGATTGTTTTGAACTTCCTCTAGTTTCTGTTATTCGATCTAATGAGT----- 251
consensus_7447#0      ATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTAATGAGTTTGCC 263
consensus_7447#2      ATAAAATATGATTGTTTTGAACTTCCTTTAGTTTCTGTTATTCGATCTA----------- 252
                      *************************** *********************           

consensus_7447#1      AGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTA 359
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      AGACGACGTCGTTGGGATCGTTTTTTACCTAATACAGCCCTTCTACTCTCAGATTTCGTA 323
consensus_7447#2      ------------------------------------------------------------
                                                                                  

consensus_7447#1      TTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGG 419
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      TTATCGTCACCTTTGTTCATCAAACATTTACGAAAGCGTGGATTTCCGGTATTCTTCTGG 383
consensus_7447#2      ------------------------------------------------------------
                                                                                  

consensus_7447#1      GTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGC------ 473
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      GTGTGTAATAATGAAGATGATATGCGAAAAGCTTTTGAACTTGGAGCTTCAGGCGTAATG 443
consensus_7447#2      ------------------------------------------------------------
                                                                                  

consensus_7447#1      ------------------------------------------------------------
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      ACGGACTATCCCAGAAAACTAACTGAATTTCTGAAGAAGCATCCTGAGTATCCGAGAGTT 503
consensus_7447#2      ------------------------------------------------------------
                                                                                  

consensus_7447#1      ------------------------------------------------------------
consensus_7447#3      ------------------------------------------------------------
consensus_7447#0      TTTTAATTCATTTCATGTGCTCGCTTTAATAAAACATTGGACTTCACTTCTGTTTATATT 563
consensus_7447#2      ------------------------------------------------------------
                                                                                  

consensus_7447#1      --------------------------------------
consensus_7447#3      --------------------------------------
consensus_7447#0      CTATATCTTCTGAATTTTTGAATTAAATTAAAATCGTG 601
consensus_7447#2      --------------------------------------