cluster # 7448

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Schistosoma mansoni
cluster # 7448 cluster # 7448 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7448#0 length = 347 sequences # 3

consensus_7448#1 length = 306 sequences # 1
consensus_7448#2 length = 302 sequences # 1

consensusID : consensus_7448#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 347
fasta sequence

                              [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA]

[+] EMBL CD192648             [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAATAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAACGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA]
[+] EMBL CD192729             [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA]
[+] EMBL CD192736             [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA]




>consensus_7448#0
ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG
CTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTT
CAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCAT
TATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGC
GTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTA
TATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA

consensusID : consensus_7448#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 306
fasta sequence

                              [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA]

[+] EMBL CD192809             [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA]




>consensus_7448#1
ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG
CTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTT
CAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCAT
TATTCACCCAGTGACCGTTTCTAATCAGATATAGCGTTTGAAATTGTATTACTTCTTCAG
CTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATT
GTCATA

consensusID : consensus_7448#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence

                              [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA]

[+] EMBL CD192051             [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA]




>consensus_7448#2
ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG
CTTGAAAGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGA
AGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTT
CCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCA
TTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCA
TA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7448#1      ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG 60
consensus_7448#2      ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG 60
consensus_7448#0      ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG 60
                      ************************************************************

consensus_7448#1      CTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTT--ATTAAACTTCATAGGTCGTT 118
consensus_7448#2      CTTGAAAGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAA-CCATG 119
consensus_7448#0      CTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTT--ATTAAACTTCATAGGTCGTT 118
                      *********   *  *       * **  *    * *   *  ***  *  **   * * 

consensus_7448#1      TTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGC 178
consensus_7448#2      AAGAAATGACTTGCATTATTCACCCAGTGACCGT-TTCTAATCAGATATAGGTACAATGC 178
consensus_7448#0      TTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGC 178
                         **    **   ***   **  * *      * ****** **   * *  *    ***

consensus_7448#1      ATTATTCACCCAGTGACCGTTTCTAATCAGATA--------------------------- 211
consensus_7448#2      TTCCTTTACATAG-AAGCGTCACTCACCAT------------------------------ 207
consensus_7448#0      ATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAA 238
                       *  ** **  **  * ***  ** * **                               

consensus_7448#1      --------------TAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGT 257
consensus_7448#2      --------------CAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGT 253
consensus_7448#0      GCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGT 298
                                     *********************************************

consensus_7448#1      TATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA 306
consensus_7448#2      TATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA 302
consensus_7448#0      TATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA 347
                      *************************************************