These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7448#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 347 fasta sequence [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA] [+] EMBL CD192648 [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAATAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAACGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA] [+] EMBL CD192729 [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA] [+] EMBL CD192736 [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA] consensusID : consensus_7448#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA] [+] EMBL CD192809 [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTTATTAAACTTCATAGGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA] consensusID : consensus_7448#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA] [+] EMBL CD192051 [ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAGCTTGAAAGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGCATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAAGCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGTTATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7448#1 ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG 60 consensus_7448#2 ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG 60 consensus_7448#0 ATGTATTTGGTGTGAGATATCAGAGAAATGTATAGAAAGTAACGATCAGGACACTCATAG 60 ************************************************************ consensus_7448#1 CTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTT--ATTAAACTTCATAGGTCGTT 118 consensus_7448#2 CTTGAAAGTCGTTTTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAA-CCATG 119 consensus_7448#0 CTTGAAAGTAAATGACTGCCGTGTTAAGGTGAGTACTT--ATTAAACTTCATAGGTCGTT 118 ********* * * * ** * * * * *** * ** * * consensus_7448#1 TTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGC 178 consensus_7448#2 AAGAAATGACTTGCATTATTCACCCAGTGACCGT-TTCTAATCAGATATAGGTACAATGC 178 consensus_7448#0 TTCAATATCCTCAAATTTCACATTCCGAAGAAATGTTCTAACCATGAAGAAATGACTTGC 178 ** ** *** ** * * * ****** ** * * * *** consensus_7448#1 ATTATTCACCCAGTGACCGTTTCTAATCAGATA--------------------------- 211 consensus_7448#2 TTCCTTTACATAG-AAGCGTCACTCACCAT------------------------------ 207 consensus_7448#0 ATTATTCACCCAGTGACCGTTTCTAATCAGATATAGGTACAATGCTTCCTTTACATAGAA 238 * ** ** ** * *** ** * ** consensus_7448#1 --------------TAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGT 257 consensus_7448#2 --------------CAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGT 253 consensus_7448#0 GCGTCACTCACCATCAGCGTTTGAAATTGTATTACTTCTTCAGCTCATTGAATGCGTCGT 298 ********************************************* consensus_7448#1 TATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA 306 consensus_7448#2 TATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA 302 consensus_7448#0 TATATCAAACGTACGAAATGAAAACCGTAGATCCATGTGAATTGTCATA 347 ************************************************* |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||