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These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 745 cluster # 745       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_745#0 length = 406 sequences # 1  
consensus_745#1 length = 398 sequences # 1  

consensusID : consensus_745#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 406
fasta sequence
                              [TTTTTTTTTTTTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAAGTTCAAGACTAGCACCACCACCAGTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCACATGTTGCGGTGTCACCACCAACAATATAGTTGTAGCACATTTTTAGTACTTGGACTACTCAT]

[+] EMBL AI395264             [TTTTTTTTTTTTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAAGTTCAAGACTAGCACCACCACCAGTACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCACATGTTGCGGTGTCACCACCAACAATATAGTTGTAGCACATTTTTAGTACTTGGACTACTCAT]


>consensus_745#0 TTTTTTTTTTTTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATAC ATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAA CAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAA TTATAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAA GTGCAACAACTCCGGGTAATTGTTTACCTTCGAGAAGTTCAAGACTAGCACCACCACCAG TACTGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCACATGTTGCGGTGTCACC ACCAACAATATAGTTGTAGCACATTTTTAGTACTTGGACTACTCAT



consensusID : consensus_745#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 398
fasta sequence
                              [TTTTTTTTTTTTTTTTTATATGACAAAAGTTTTATTCTTGGATGATGTTACAATGAAATACCAACAGCACCTTTTCAATATACCACTTGAAGATGGGCAAAAGCTACGCACATATATGGAAAAAAAACTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTTAAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCCGGGAAATGTTAACCTTCGAGAAATTCA]

[+] EMBL AI394924             [TTTTTTTTTTTTTTTTTATATGACAAAAGTTTTATTCTTGGATGATGTTACAATGAAATACCAACAGCACCTTTTCAATATACCACTTGAAGATGGGCAAAAGCTACGCACATATATGGAAAAAAAACTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATCTACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAGTAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTATAATTAATTATGAAGTTAAGGGATATTTAAACCGAACGTATTAATGAGCATCCGTAAGTGCAACAACTCCCGGGAAATGTTAACCTTCGAGAAATTCA]


>consensus_745#1 TTTTTTTTTTTTTTTTTATATGACAAAAGTTTTATTCTTGGATGATGTTACAATGAAATA CCAACAGCACCTTTTCAATATACCACTTGAAGATGGGCAAAAGCTACGCACATATATGGA AAAAAAACTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATC TACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAG TAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTA TAATTAATTATGAAGTTAAGGGATATTTAAACCGAACGTATTAATGAGCATCCGTAAGTG CAACAACTCCCGGGAAATGTTAACCTTCGAGAAATTCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_745#0      ------------------------------------------------------------
consensus_745#1      TTTTTTTTTTTTTTTTTATATGACAAAAGTTTTATTCTTGGATGATGTTACAATGAAATA 60
                                                                                 

consensus_745#0      ---------------------------------------------------------TTT 3
consensus_745#1      CCAACAGCACCTTTTCAATATACCACTTGAAGATGGGCAAAAGCTACGCACATATATGGA 120
                                                                                 

consensus_745#0      TTTTTTTTTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATC 63
consensus_745#1      AAAAAAACTATTACAGGAAATTTCTATTGGCAGCAAATGCGCATATGGCAGAAATACATC 180
                             ****************************************************

consensus_745#0      TACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAG 123
consensus_745#1      TACACGTACAGAAATTAAAGAGAAAATATATCCGTCAAATCAAGAACAGATATATAACAG 240
                     ************************************************************

consensus_745#0      TAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTA 183
consensus_745#1      TAAAAAGTAACCATAAAACTGGGAACAATTGTGACAATTCAAAGTTAAGAACACTAATTA 300
                     ************************************************************

consensus_745#0      TAATTAATTATGAAGTTAAGGGATATTATAACCGAACGTATTAATGAGCATCCGTAAGTG 243
consensus_745#1      TAATTAATTATGAAGTTAAGGGATATTTAAACCGAACGTATTAATGAGCATCCGTAAGTG 360
                     ***************************  *******************************

consensus_745#0      CAACAACTCCGGGTAATTGTTTACCTTCGAGAAGTTCAAGACTAGCACCACCACCAGTAC 303
consensus_745#1      CAACAACTCCCGGGAAATGTTAACCTTCGAGAAATTCA---------------------- 398
                     ********** ** ** **** *********** ****                      

consensus_745#0      TGACATGACTAACTTTGTCTTCTGTGTCCCATTTGGCGCACATGTTGCGGTGTCACCACC 363
consensus_745#1      ------------------------------------------------------------
                                                                                 

consensus_745#0      AACAATATAGTTGTAGCACATTTTTAGTACTTGGACTACTCAT 406
consensus_745#1      -------------------------------------------
                                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)