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Schistosoma mansoni
cluster # 7450 cluster # 7450       Sequences # 5       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_7450#0 length = 748 sequences # 1  
consensus_7450#1 length = 632 sequences # 4  

consensusID : consensus_7450#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 748
fasta sequence
                              [TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGATGATATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATTAGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCGAACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCGACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGCTCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTGTCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC]

[+] EMBL CD115267             [TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGATGATATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATTAGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCGAACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCGACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGCTCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTGTCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC]


>consensus_7450#0 TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTA CAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGG AATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAG CGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACG GACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAG AACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCG AATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGATGATATTTCCAAAC AGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATTAGATTCTGATGCAA GTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCGAACAGAGGCCTCTG ATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCGACGTCCACGGTGAC GTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGCTCACGTGTTAAATG GGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTGTCACTCTCCTCTGG CTCAGAATCATTAACCTTTCTCGAACAC



consensusID : consensus_7450#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 632
fasta sequence
                              [ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACATTATGAATNTGGCTTTTGTGGTGAGAGTTCGAATAACTGAAGGAGGGTACC]

[-] EMBL CD062035             [ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD123799             [                                               CGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACA                                                   ]
[-] EMBL CD123808             [                                               CGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTATTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCTCTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTATGATCATATGAATCCGAATCACTGATGGATAGTATCCGCAGTTTTTTACGGGAGGGCTTTGACTCATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACA                                                   ]
[-] EMBL CD129262             [                                                                                          TTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCGGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACATTATGAATNTGGCTTTTGTGGTGAGAGTTCGAATAACTGAAGGAGGGTACC]


>consensus_7450#1 ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTAC GCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACAC GTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCT GTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATT TAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCAT TAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGT GCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATC GTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGAT CATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACT GATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACATTATGAATNTGGCTTTTGT GGTGAGAGTTCGAATAACTGAAGGAGGGTACC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7450#0      ------------------------------------------------------------
consensus_7450#1      ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTAC 60
                                                                                  

consensus_7450#0      ------------------------------------------------------------
consensus_7450#1      GCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACAC 120
                                                                                  

consensus_7450#0      ------------TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCT 48
consensus_7450#1      GTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCT 180
                                  ************************************************

consensus_7450#0      GTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATT 108
consensus_7450#1      GTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATT 240
                      ************************************************************

consensus_7450#0      TAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCAT 168
consensus_7450#1      TAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCAT 300
                      ************************************************************

consensus_7450#0      TAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGT 228
consensus_7450#1      TAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGT 360
                      ************************************************************

consensus_7450#0      GCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATC 288
consensus_7450#1      GCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATC 420
                      ************************************************************

consensus_7450#0      GTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGAT 348
consensus_7450#1      GTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGAT 480
                      ************************************************************

consensus_7450#0      CATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGA-T 407
consensus_7450#1      CATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACT 540
                      *****************************************************   ** *

consensus_7450#0      GAT-ATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATT 466
consensus_7450#1      GATTATTATCTGATACTTGTTCATTAAAGTCTG-ACCGAACATTATGAATNTGGCTTTTG 599
                      *** ***  *  * *  *  ** *   * * **    * **   ******      * * 

consensus_7450#0      AGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCG 526
consensus_7450#1      TGGTGAGAGTTCGAAT--AACTGAAGGAGGGTACC------------------------- 632
                       * *     * * * *  *     *  * * *  *                         

consensus_7450#0      AACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCG 586
consensus_7450#1      ------------------------------------------------------------
                                                                                  

consensus_7450#0      ACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGC 646
consensus_7450#1      ------------------------------------------------------------
                                                                                  

consensus_7450#0      TCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTG 706
consensus_7450#1      ------------------------------------------------------------
                                                                                  

consensus_7450#0      TCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC 748
consensus_7450#1      ------------------------------------------
                                                                




Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)