These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7450#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGATGATATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATTAGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCGAACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCGACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGCTCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTGTCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC] [+] EMBL CD115267 [TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGATGATATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATTAGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCGAACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCGACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGCTCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTGTCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC] consensusID : consensus_7450#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 632 fasta sequence [ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACATTATGAATNTGGCTTTTGTGGTGAGAGTTCGAATAACTGAAGGAGGGTACC] [-] EMBL CD062035 [ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTt ] [-] EMBL CD123799 [ CGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACA ] [-] EMBL CD123808 [ CGTATTTTCTTACGCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTATTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCTCTAGGAGATCGTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTATGATCATATGAATCCGAATCACTGATGGATAGTATCCGCAGTTTTTTACGGGAGGGCTTTGACTCATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACA ] [-] EMBL CD129262 [ TTTTGGATTTGCGTAGCTTTTTCTTGACACGTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCTGTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATTTAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCATTAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGTGCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATCGTAGTAATCGAGAACGGTGACCGGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGATCATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACTGATTATTATCTGATACTTGTTCATTAAAGTCTGACCGAACATTATGAATNTGGCTTTTGTGGTGAGAGTTCGAATAACTGAAGGAGGGTACC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7450#0 ------------------------------------------------------------ consensus_7450#1 ACCCTGATGGTTTCGGGCTAACAGACGATAGGGACGAGGAGAGTTTCCGTATTTTCTTAC 60 consensus_7450#0 ------------------------------------------------------------ consensus_7450#1 GCATTGTTTTGTTTCTCGAACGCTGGAATTTTTTGGATTTGCGTAGCTTTTTCTTGACAC 120 consensus_7450#0 ------------TTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCT 48 consensus_7450#1 GTTTGCCTTTTGTTTTAGATAAGCGTCTTTTGGTTCTTTTCGTTGTCTTACTTTTTTTCT 180 ************************************************ consensus_7450#0 GTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATT 108 consensus_7450#1 GTGGGTTTTTTACAACAGGAACAAAAGTTTCATCGAAATTAGAAGTTTCTGAATCAGATT 240 ************************************************************ consensus_7450#0 TAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCAT 168 consensus_7450#1 TAATATGAATGGAATCCATATGAGAAGACTCCAATGTTCTATTTCTGCGTGCATCCTCAT 300 ************************************************************ consensus_7450#0 TAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGT 228 consensus_7450#1 TAAAACTGGTAGCGCTCGTTTGGATAGCAGTATTGCCTTCCTGAACTCCATTGGAATCGT 360 ************************************************************ consensus_7450#0 GCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATC 288 consensus_7450#1 GCGAAGATGACGGACCAGCTAAAACAGGAAACTCTTCCACTTCTGATTCACTAGGAGATC 420 ************************************************************ consensus_7450#0 GTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGAT 348 consensus_7450#1 GTAGTAATCGAGAACGGTGACCAGTAAGTTTTGTTTTTTTAAGTATAACTCCATTCTGAT 480 ************************************************************ consensus_7450#0 CATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCGAAGA-T 407 consensus_7450#1 CATCTGAATCCGAATCACTGCTGGATAGTATCCGCAGTCTTTTACGGGAGGGCTCTGACT 540 ***************************************************** ** * consensus_7450#0 GAT-ATTTCCAAACAGATTGTCGTCTGACTGTGCGTTGGACCAGATGAATTAAAACTATT 466 consensus_7450#1 GATTATTATCTGATACTTGTTCATTAAAGTCTG-ACCGAACATTATGAATNTGGCTTTTG 599 *** *** * * * * ** * * * ** * ** ****** * * consensus_7450#0 AGATTCTGATGCAAGTTGATTCTCAACACGTTGTCGTTGACTGCGACGGCGTTGCGCTCG 526 consensus_7450#1 TGGTGAGAGTTCGAAT--AACTGAAGGAGGGTACC------------------------- 632 * * * * * * * * * * * * consensus_7450#0 AACAGAGGCCTCTGATGTTATTCGTTCACTTAGATCAGCGATTAAATCCTNNGCATACCG 586 consensus_7450#1 ------------------------------------------------------------ consensus_7450#0 ACGTCCACGGTGACGTCTAGTAGCCTGCTCTTCGAGCCTCTTTGAGCAGCAAAACTAAGC 646 consensus_7450#1 ------------------------------------------------------------ consensus_7450#0 TCACGTGTTAAATGGGAGGTTTTCTGAGCTAGAACCTNAGGAAGTGTTCAATTCATCGTG 706 consensus_7450#1 ------------------------------------------------------------ consensus_7450#0 TCACTCTCCTCTGGCTCAGAATCATTAACCTTTCTCGAACAC 748 consensus_7450#1 ------------------------------------------ |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||