cluster # 7453

These datas are free for academic use only, please contact me for any other use.

Schistosoma mansoni
cluster # 7453 cluster # 7453 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7453#0 length = 379 sequences # 4

consensus_7453#1 length = 162 sequences # 1

consensusID : consensus_7453#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 379
fasta sequence

                              [TCTAAATTGTTAGTCTNGTTCAGTATCCTCATCATCGNATTACCACTTTCATCACTATTTCTGTCGAAATTCGTATTGTCAGATTTCTTTCACATGG-AATCTTCGTCTGCTTACATTGGGGCTGCAGTGGTCTCCATCATCGTCGTCCATTTTGTGCTGTTAGGTTTTATCGTTGTCGCATTTTCAGAGACAAAACCCCACACTCCTGTTGTAGGACGGAAACATGAGTAACGACATATCAAAAATTTGCCATCGACGCATTTTGGTTTCTCCTACTGTAGTAGGCAGTATATAAACATTCCTTTTCCCGTTTACTTCATTTGGTACTGTGACTTGTGGCTTTTATGGATTGNAAATAATTGCTTCCTGTAATTTATTT]

[+] EMBL SM880                [TCTAAATTGTTAGTCTNGTTCAGTATCCTCATCATCGNATTACCACTTTCATCACTATTTCTGTCGAAATTCGTATTGTCAGATTTCTTTCACATGGNAATCTTCGTCTGCTTACATTGGGGCTGCAGTGGTCTCCATCATCGTCGTCCATTTTGTGCTGTTAGGTTTTATCGTTGTCGCATTTTCAGAGACAAAACCCCACACTCCTGTTGTAGGACGGAAACATGAGTAACGACATATCAAAAATTTGCCATCGACGCATTTTGGTTTCTCCTACTGTAGTAGGCAGTATATAAACATTCCTTTTCCCGTTTACTTCATTTGGTACTGTGACTTGTGGCTTTTATGGATTGNAAATAATTGCTTCCTGTAATTTATTT]
[+] EMBL CD199430             [                                                TCATCACTATTTCTGTCGAAATTCGTATTGTCTGATTTCTTTCACATGG CATCTTCGTCTGCTTACATTGGGGCTGCAGTGGTCTCCAACATCGTCGTCCATTTTGTGCTGTTAGGTTTTATCGTTGTCGCATTTTCAGAGACAAAACCCCACACTCCTGTTGTAGGACGGAAACATGAGTAACGACATATCANAAATTTGCCATCGACGC                                                                                                                        ]
[-] EMBL CD199442             [                                                 CATCACTATNTCTGTCGAAATTCGTATTGTCAGATATCTTTCACATGG AATCTTCGTCTGCTTACATGGGGGCTGCAGTGGTCTCCATCATCGTCGTCCATTTTGTGCTGTTAGGTTTTATCGTTGTCGCATTTTCAGAGACAAAACCCCACACTCCTGTTGTAGGACGGAAACATGAGTAACGACATATCAAAAATTTGCCATCGACGCATTTTGGTTTCTCCTACTGTAGTAGGCAGTATATAAACATTCCTTTTCCCGTTTACTTC                                                             ]
[-] EMBL CD167728             [                                                                 GAAATTCGTATTGTCAGATTTCTTTCACATGG AATCTTCGTCTGCTTACATTGGGGCTGCAGTGGTCTCCATCATCGTCGTCCATTTTGTGCAGTTAGGTTTTATCGTTGTCGCATTTTCAGAGACAAAACCCCACACTCCTGTTGTAGGACGGAAACATGAGTAACGACATATCAAAAATTTGCCATCGACGCATTTTGGTTTCTCCTACTGTAGTAGGCAGTATATAAACATTCCTTTTCCCG  TACTTCA                                                            ]




>consensus_7453#0
TCTAAATTGTTAGTCTNGTTCAGTATCCTCATCATCGNATTACCACTTTCATCACTATTT
CTGTCGAAATTCGTATTGTCAGATTTCTTTCACATGGAATCTTCGTCTGCTTACATTGGG
GCTGCAGTGGTCTCCATCATCGTCGTCCATTTTGTGCTGTTAGGTTTTATCGTTGTCGCA
TTTTCAGAGACAAAACCCCACACTCCTGTTGTAGGACGGAAACATGAGTAACGACATATC
AAAAATTTGCCATCGACGCATTTTGGTTTCTCCTACTGTAGTAGGCAGTATATAAACATT
CCTTTTCCCGTTTACTTCATTTGGTACTGTGACTTGTGGCTTTTATGGATTGNAAATAAT
TGCTTCCTGTAATTTATTT

consensusID : consensus_7453#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 162
fasta sequence

                              [TNGNCATCGANGNATTTGGGTTTCTCCTACTGTAGTAGGNAGTATATAAACATTCCTTTNCCCGTTTACTTCATNTGGTNCTGTGACTTGTGGTTNTATGATTGTAAATAATTGCTTCCTGTAATTTATTTNACCTCTCAGTGCAGTTTTTTTATAAATAGA]

[+] EMBL SM725                [TNGNCATCGANGNATTTGGGTTTCTCCTACTGTAGTAGGNAGTATATAAACATTCCTTTNCCCGTTTACTTCATNTGGTNCTGTGACTTGTGGTTNTATGATTGTAAATAATTGCTTCCTGTAATTTATTTNACCTCTCAGTGCAGTTTTTTTATAAATAGA]




>consensus_7453#1
TNGNCATCGANGNATTTGGGTTTCTCCTACTGTAGTAGGNAGTATATAAACATTCCTTTN
CCCGTTTACTTCATNTGGTNCTGTGACTTGTGGTTNTATGATTGTAAATAATTGCTTCCT
GTAATTTATTTNACCTCTCAGTGCAGTTTTTTTATAAATAGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7453#0      TCTAAATTGTTAGTCTNGTTCAGTATCCTCATCATCGNATTACCACTTTCATCACTATTT 60
consensus_7453#1      ------------------------------------------------------------
                                                                                  

consensus_7453#0      CTGTCGAAATTCGTATTGTCAGATTTCTTTCACATGGAATCTTCGTCTGCTTACATTGGG 120
consensus_7453#1      ------------------------------------------------------------
                                                                                  

consensus_7453#0      GCTGCAGTGGTCTCCATCATCGTCGTCCATTTTGTGCTGTTAGGTTTTATCGTTGTCGCA 180
consensus_7453#1      ------------------------------------------------------------
                                                                                  

consensus_7453#0      TTTTCAGAGACAAAACCCCACACTCCTGTTGTAGGACGGAAACATGAGTAACGACATATC 240
consensus_7453#1      ------------------------------------------------------------
                                                                                  

consensus_7453#0      AAAAATTTGCCATCGACGCATTTTGGTTTCTCCTACTGTAGTAGGCAGTATATAAACATT 300
consensus_7453#1      ------TNGNCATCGANGNATTTGGGTTTCTCCTACTGTAGTAGGNAGTATATAAACATT 54
                            * * ****** * **** ********************* **************

consensus_7453#0      CCTTTTCCCGTTTACTTCATTTGGTACTGTGACTTGTGGCTTTTATGGATTGNAAATAAT 360
consensus_7453#1      CCTTTNCCCGTTTACTTCATNTGGTNCTGTGACTTGTGG-TTNTATG-ATTGTAAATAAT 112
                      ***** ************** **** ************* ** **** **** *******

consensus_7453#0      TGCTTCCTGTAATTTATTT------------------------------- 379
consensus_7453#1      TGCTTCCTGTAATTTATTTNACCTCTCAGTGCAGTTTTTTTATAAATAGA 162
                      *******************