cluster # 7461

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Schistosoma mansoni
cluster # 7461 cluster # 7461 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7461#0 length = 472 sequences # 1

consensus_7461#1 length = 446 sequences # 4

consensusID : consensus_7461#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 472
fasta sequence

                              [ACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAATTCATCATACAAGCCACGTCTTGTTGCGGTCACGCGTCGACGTCACGAGAACTATACTCCCGTCTGAGTCAGATAGCAGATCCAATTCACAAATACACTCGATCGCTCACATCTCTCGATACAACTGCACCTCTTCACAGTCCACTCTCTCCGTCGACAAACGAACAGCACCGTCTTCGCTCCTGAAGTTCTTCATACTAGCAGTTGAGTTGCGGTCAGCGTCGACTTCCCGAAGACTATACTCCCGTCTAGTCCGTTGAATCCAATTCACAAATACGCTCGATCGTTCATATCTCTCGATACCACTGGACGTCTTCACAAGACATTCTGTCTGTCAGCACCTGGGAGGAACCGTTTTCGCTCCTCCA]

[+] EMBL CD121483             [ACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAATTCATCATACAAGCCACGTCTTGTTGCGGTCACGCGTCGACGTCACGAGAACTATACTCCCGTCTGAGTCAGATAGCAGATCCAATTCACAAATACACTCGATCGCTCACATCTCTCGATACAACTGCACCTCTTCACAGTCCACTCTCTCCGTCGACAAACGAACAGCACCGTCTTCGCTCCTGAAGTTCTTCATACTAGCAGTTGAGTTGCGGTCAGCGTCGACTTCCCGAAGACTATACTCCCGTCTAGTCCGTTGAATCCAATTCACAAATACGCTCGATCGTTCATATCTCTCGATACCACTGGACGTCTTCACAAGACATTCTGTCTGTCAGCACCTGGGAGGAACCGTTTTCGCTCCTCCA]




>consensus_7461#0
ACTCAAAAATACACTCGCTCACTCACATCTCTCGATACAACTACACCTCTTCACAGTCCA
CTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAATTCATCATACAAGCCA
CGTCTTGTTGCGGTCACGCGTCGACGTCACGAGAACTATACTCCCGTCTGAGTCAGATAG
CAGATCCAATTCACAAATACACTCGATCGCTCACATCTCTCGATACAACTGCACCTCTTC
ACAGTCCACTCTCTCCGTCGACAAACGAACAGCACCGTCTTCGCTCCTGAAGTTCTTCAT
ACTAGCAGTTGAGTTGCGGTCAGCGTCGACTTCCCGAAGACTATACTCCCGTCTAGTCCG
TTGAATCCAATTCACAAATACGCTCGATCGTTCATATCTCTCGATACCACTGGACGTCTT
CACAAGACATTCTGTCTGTCAGCACCTGGGAGGAACCGTTTTCGCTCCTCCA

consensusID : consensus_7461#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 446
fasta sequence

                              [TAATTTATGTTGTGTACAATATAATATTT-AAT-AAC-AATGAAAGAGAATTAGGTAG-AAAAATAATGTTTAGATTTTGTTA-TTTTCTTGGATTGTAAACATCTTAACCTCAGTAGACTTGCATACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCTTTGGTAAATATTTCGAGGTGTATTTATTACAAATATTTTTTATTTGTTCAGAAGAGATGAATGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAAATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCATCTCATAGTCATTTTCTTCGACTGTTGATACTTTAAATGCATCAGAAGTAGGATGGAAAATACAAAATATGAATAGGACAGTAATCA]

[-] EMBL AA774381             [TAATTTATGTTGTGTACAATATAATATTTAAATAAACAAATGAAAGAGAATTAGGTAGAAAAAATAATGTTTAGATTTTGTTATTTTTCTTGGATTGTAAACATCTTAACCTCAGTAGACTTGCATACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCTTTGG                                                                                                                                                                                                                                                                       ]
[-] EMBL AI975368             [             GTACAATATAATATTT AAT AAC AATGAAAGAGAATTAGGTAG AAAAATAATGTTTAGATTTTGTTA TTTTCTTGGATTGTAAACATCTTAACCTCAGTAGACTTGCATACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCTTTGGTAAATATTTCGAGGTGTATTTATTACAAATATTTTTTATTTGTTCAAAAGAGATGAATGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAAATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCATCTCATAGTCATTTTCTTCGACTGTTGATACTTTAAATGCATCAGAAGTAGGATGGAAAATACAAAATATGAATAGGACAGTAATCA]
[+] EMBL CD063324             [                                                                                                                                                                                                                 ATTACAAATATTTTTTATTTGTTCAGAAGAGATGAATGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAAATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCATCTCATAGTCATTTTCTTCGACTATTGATACTTTAAATGCATCAGAAGTAGGATGGAAAATACAAAATATGAATAGGACAG      ]
[+] EMBL AI975859             [                                                                                                                                                                                                                                          GAAGAGATGAATGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAAATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCATCTCATAGTCATTTTCTTCGACTGTTGATACTTTAAAT                                                 ]




>consensus_7461#1
TAATTTATGTTGTGTACAATATAATATTTAATAACAATGAAAGAGAATTAGGTAGAAAAA
TAATGTTTAGATTTTGTTATTTTCTTGGATTGTAAACATCTTAACCTCAGTAGACTTGCA
TACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCTT
TGGTAAATATTTCGAGGTGTATTTATTACAAATATTTTTTATTTGTTCAGAAGAGATGAA
TGTACACAGTTTTTTAGCACCCATCATGTATACATCACGCCAATACAAATCATCCATAAA
ATAGTGTGCTAAACTAAGTCCTGATAGACATAATCTACATTCTAAAGTAACGTTTTGCAT
CTCATAGTCATTTTCTTCGACTGTTGATACTTTAAATGCATCAGAAGTAGGATGGAAAAT
ACAAAATATGAATAGGACAGTAATCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7461#0      -ACTCAAAAATACACTCGCTCACTCACATC-TCTCGATACAACTACACCTCTTCACAGTC 58
consensus_7461#1      TAATTTATGTTGTGTACAATATAATATTTAATAACAATGAAAGAGAATTAGGTAGAAAAA 60
                       * *  *   *     *  *     *  *  *  * **  **    *     *   *   

consensus_7461#0      CACTCTCTCCATCGCCAAACCAACACCACCGTCTTCGCTCCTGAAATTCATCATACAAGC 118
consensus_7461#1      TAATGTTTAGATTTTGTTATTTTCTTGGAT-TGTAAACATCTTAACCTCAGTAGACTTGC 119
                       * * * *  **      *    *       * *   *  ** **  ***  * **  **

consensus_7461#0      -CACGTCTTGTTGCGGTCACGCGTC-GACGTCACGAG-AACTATACTCCCGTCTGAGTCA 175
consensus_7461#1      ATACATCGAAGTCCGTACAAATTCCAGGTCCTATTAGTGATCCTACTTCATCCAAAATCT 179
                        ** **    * **  **     * *     *  **  *   **** *   *  * ** 

consensus_7461#0      --GATAGCAGATCCAATTCACAAATACACTCGATCGCTCACATCT-CTCGATACAACTGC 232
consensus_7461#1      TTGGTAAATATTTCGAGGTGTATTTATTACAAATATTTTTTATTTGTTCAGAAGAGATGA 239
                        * **     * * *     *  **      **   *   ** *  **   * *  ** 

consensus_7461#0      ACCTCTTCACAGTCCACTCTCTCCGTCGACAAACGAACAGCACCGTCTTCGCTCCTGAAG 292
consensus_7461#1      A--TGTACACAGTTTTTTAGCACC--CATCATGTATACATCAC-GCCAATAC-----AAA 289
                      *  * * ******    *  * **  *  **     *** *** * *    *     ** 

consensus_7461#0      TTCTTCATACTAGCAGTTGAGTTGCGGTCAGCGTCGACTTCCCGAAGACTATACTCCCGT 352
consensus_7461#1      TCATCCATAA-AATAGT-GTGCTAAACTAAGTCCTGA-TAGACATAATCTACATTCTAAA 346
                      *  * ****  *  *** * * *    * **    ** *   *  *  *** * **    

consensus_7461#0      CTAGTCCGTTGAATCCAATTCACAAATACGCTCGATCGTTCATATCTCTCGATACCACTG 412
consensus_7461#1      GTAACGTTTTGCATCTCATAGTCATTTTC-TTCGACTGTTGATA-CTTTAAATGC-ATCA 403
                       **     *** ***  **   **  * *  ****  *** *** ** *  ** * *   

consensus_7461#0      GACGTCTTCACAAGACATTCTGTCTGTCAGCACCTGGGAGGAACCGTTTTCGCTCCTCCA 472
consensus_7461#1      GAAGTAGG-ATGGAAAATACAAAATATGAATAG--GACAGTAATCA-------------- 446
                      ** **    *    * ** *    * * *  *   *  ** ** *