cluster # 7462

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Schistosoma mansoni
cluster # 7462 cluster # 7462 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7462#0 length = 914 sequences # 4

consensus_7462#1 length = 192 sequences # 1

consensusID : consensus_7462#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 914
fasta sequence

                              [CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGTTTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAATGTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCACGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGAAGTGACCAGGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGTTTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCTCCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTAGACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGTGTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTGGAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTTTGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTTTATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGATCATTATCATACACACATAAAAACTGATGCACCAAATGCCTTGGAAGAATTTGAGAATGAGGAAGCTGAAATAGTGAAAAGTGATCCAGATAAAGAAGTAAACCTCAAGGATGGTACTAATAAAAAATCGGCAAATAAACTAATGACATGTGACATTTGTACAGAGTTTTATGGAACGAAATTAACTATTATTTT]

[-] EMBL CD098370             [CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGTTTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAATGTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCACGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGAAGTGACCAGGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGTTTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCTCCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTAGACTTTTGTGATGGTGTTAGTTTCTCCCTTCGTACCCCTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CD098321             [CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGTTTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAATGTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCACGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGAAGTGACCAAGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGTTTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCTCCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTAGACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CD189761             [                                                                                                                                                                                                                                                                                                             TGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCTCCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAGGTACTTGCACAACATCTAGACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGTGTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTGGAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTTTGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTTTATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGATCATTATCATACACACATAAAAACTGATGCACCAAATGCCTTGGAAGAATTTGAGAATGAGGAAGCTGAAATAGTGAAAAGTGATCCAGATAAAGAAGTAAACCTCAAGGATGGTACTAATAAAAAATCGGCAAATAAACTAATGACATGTGACATTTGTACAGAGTTTTATGGAACGAAATTAACTATTATTTT]
[+] EMBL CD145600             [                                                                                                                                                                                                                                                                                                                                                                             nnGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAGGTACTTGCACAACATCTAGACTTTTGTGATGGTGTGAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGTGTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTGGAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTTTGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTTTATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGATCATTATCATACACACATAAAAACTGATGCACCAA                                                                                                                                                                ]




>consensus_7462#0
CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGT
TTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAAT
GTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCA
CGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGA
AGTGACCAGGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGT
TTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCT
CCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTA
GACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGT
GTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTG
GAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTT
TGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTT
TATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGAT
CATTATCATACACACATAAAAACTGATGCACCAAATGCCTTGGAAGAATTTGAGAATGAG
GAAGCTGAAATAGTGAAAAGTGATCCAGATAAAGAAGTAAACCTCAAGGATGGTACTAAT
AAAAAATCGGCAAATAAACTAATGACATGTGACATTTGTACAGAGTTTTATGGAACGAAA
TTAACTATTATTTT

consensusID : consensus_7462#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 192
fasta sequence

                              [AACAAATCCGCATAGTTTACATTTCATTTTACGAATACCGAGAGAAGAAAGATCTTCTTTATCGACACGTGGTCGAAGATGTCGTGTATGGGTGAGCATATGAAGCATATTTTCCGACACTCCGTCACCTGGATGTACTACTCCGTGTTCTGCCCACTGATGAAAATAATAGTTAAATTTCGTTCCATAAAA]

[+] EMBL CD193333             [AACAAATCCGCATAGTTTACATTTCATTTTACGAATACCGAGAGAAGAAAGATCTTCTTTATCGACACGTGGTCGAAGATGTCGTGTATGGGTGAGCATATGAAGCATATTTTCCGACACTCCGTCACCTGGATGTACTACTCCGTGTTCTGCCCACTGATGAAAATAATAGTTAAATTTCGTTCCATAAAA]




>consensus_7462#1
AACAAATCCGCATAGTTTACATTTCATTTTACGAATACCGAGAGAAGAAAGATCTTCTTT
ATCGACACGTGGTCGAAGATGTCGTGTATGGGTGAGCATATGAAGCATATTTTCCGACAC
TCCGTCACCTGGATGTACTACTCCGTGTTCTGCCCACTGATGAAAATAATAGTTAAATTT
CGTTCCATAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7462#0      CTTCCTGAACACTGGGGTGTTTGTTGTTTGTGTGCTAAAGAACTGCGTTCACCAAACGGT 60
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      TTGTTGGATCATGAAATGAGACATTTAGGTCTCTCTAGGTTCCGATGTGGAGTTCATAAT 120
consensus_7462#1      --AACAAATCCGCATAGTTTACATTTCATTTTACGAATACCGAGAGAAGAAAGATCTTCT 58
                             ***   * *    ******   * *    *      **   * *     *  *

consensus_7462#0      GTTTCGTTCCTTGATCGGCGATCATGGCAAGTTCATATGAATGAACATCATGCATGCCCA 180
consensus_7462#1      TTATCGACACGTGGTCGAAGAT-GTCGTGTATGGGTGAGCATATGAAGCATATTTTCCGA 117
                       * ***   * ** ***  ***  * *    *   *  * **    * ***   * ** *

consensus_7462#0      CGTTCAGGTCCTTTATCTGTTCTTTTACGTCCGAATCCAGTTAATCAAAATGATTCTGGA 240
consensus_7462#1      CACTCCG-TCACCTGGATGTACTACTCCGTGTTCTGCCCACTGATGAAAATAATAGTTAA 176
                      *  ** * **   *   *** **  * ***      **   * ** ***** **  *  *

consensus_7462#0      AGTGACCAGGATGAAGAAGATGATGAACTAGTTGAACAAGACACTGTCCCAGGTAGTGGT 300
consensus_7462#1      ATTTCGTTCCATAAAA-------------------------------------------- 192
                      * *       ** **                                             

consensus_7462#0      TTGCTCGCTGGACTTGCGAACGTATTCAACACAAATCTTTTAGTTGGTCGAATGGAAGCT 360
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      CCACAATGCGAAAAATGCAGTGATTATTTCCCATCAGCAGAAGTGCTTGCACAACATCTA 420
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      GACTTTTGTGATGGTGTTAGTTTCTCTCTTCGTACCCCTTTATCTCGAATCGGCGGTGGT 480
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      GTTTCGAAGACCATCTTAGCAGATGATTCATACACTAGGTCTGGAGATGATACAACTGTG 540
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      GAAGGTTCTGTTCCAAATGCTGATGAAGTGACATCAGACGCCAAAGATGATGCATGTGTT 600
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      TGCGGTATCTGTGGAACTCAAGTCAATTCACGTGATAAAATACTTCGACACTTCACTGTT 660
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      TATCACCTTCAATGCATTTTGTGTAATAACATCCTTCGGTCAATGGAAGAATTGTCTGAT 720
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      CATTATCATACACACATAAAAACTGATGCACCAAATGCCTTGGAAGAATTTGAGAATGAG 780
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      GAAGCTGAAATAGTGAAAAGTGATCCAGATAAAGAAGTAAACCTCAAGGATGGTACTAAT 840
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      AAAAAATCGGCAAATAAACTAATGACATGTGACATTTGTACAGAGTTTTATGGAACGAAA 900
consensus_7462#1      ------------------------------------------------------------
                                                                                  

consensus_7462#0      TTAACTATTATTTT 914
consensus_7462#1      --------------