cluster # 7465

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Schistosoma mansoni
cluster # 7465 cluster # 7465 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7465#0 length = 694 sequences # 4

consensus_7465#1 length = 519 sequences # 1

consensusID : consensus_7465#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 694
fasta sequence

                              [TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATAACAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGAAATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAA-GACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTGTGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGACGCTTGACCTCTTCTTGTAGAATCGTCTTCATGATCATTGAAA]

[+] EMBL CD076171             [TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATAACAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGAAATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAA GACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTGTGATGGACCCATAACATTTGATGTCCAACC                                                                ]
[+] EMBL CD073387             [TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATAACAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGAAATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAACGACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCCACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAG                                                                                                                                            ]
[-] EMBL CD082573             [                                                                                                                TCATTGAAATAATGAGAATAGAAGAGAATAATGAAAGTACATGACTAGATTCAATTGAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAA GACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTGTGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGACGC                                        ]
[-] EMBL CD083625             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTGTGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGGAGCTTGACCTCTTCTTGTAGAATCGTCTTCATGATCATTGAAA]




>consensus_7465#0
TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATAA
CAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGAA
ATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGGA
TAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATAT
GTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATG
TACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAAGACGATCATG
TGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCGAAC
AAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGT
ATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATT
AGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGACTG
TGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGACGCTTGACC
TCTTCTTGTAGAATCGTCTTCATGATCATTGAAA

consensusID : consensus_7465#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 519
fasta sequence

                              [GACTAAATTCAATGAAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCTTTAAGAGTAAAGAGGAAAGTGCGAAACATTGAATAAGTATGCAGTTAAAGTGAGATTTTTGCAAATTTGAATAAACAAACTACTCTATACACACACAAACAATAAACATTAGTACATTACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAACGACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCCACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCAC]

[-] EMBL CD084386             [GACTAAATTCAATGAAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCTTTAAGAGTAAAGAGGAAAGTGCGAAACATTGAATAAGTATGCAGTTAAAGTGAGATTTTTGCAAATTTGAATAAACAAACTACTCTATACACACACAAACAATAAACATTAGTACATTACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAACGACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCCACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCAC]




>consensus_7465#1
GACTAAATTCAATGAAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATA
CGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAATAACATCAATTCT
GTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCTTTAAGAGTAAAGAGGAAAGT
GCGAAACATTGAATAAGTATGCAGTTAAAGTGAGATTTTTGCAAATTTGAATAAACAAAC
TACTCTATACACACACAAACAATAAACATTAGTACATTACCCGATGATATATGAGTTTCG
GGTGAAGGAGTTCGTGAACGACGATCATGTGTAAAATGTGTATTTGAAGAAGTATAATGT
GAATCTGAAAAACCAGTTCCACTTCGAACAAATGATTCTTCTTCAGTATAGACTGGAGTA
GTTCGTGAATAACCACTGCCAGGATTGGTATTTGATCTAGATCCCATAAAATAGCCTCCA
AGAAATCCAGCACCTGCAGCTAGCCCATTAGATAACCAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7465#0      -TTAAAATTTTATACACATTATGTATACATATAGACAGAACAAAAATAAACTCGGTGATA 59
consensus_7465#1      GACTAAATTCAATGAAACTCAAAGGATAATTCTGTAGGAACATCTTGAAATAGATCGATA 60
                          *****  **  *  * *       **   *   *****     ***      ****

consensus_7465#0      ACAAAACAATGAGTTCAAAGTTGGAGAAAATAACCCCGAACACAAGTTATTGATCATTGA 119
consensus_7465#1      --CGGATGATGAATGATGATTGATATATGTAAATTTCGATCTTCTATAAT--AACATC-- 114
                           *  **** *    * *   * *    **   *** *     * **  * ***   

consensus_7465#0      AATAATGAAAATAGAAGAAAATAATGAAAGTACATGACTAAATTCAATTGAACTCAAAGG 179
consensus_7465#1      AATTCTGTAGTTAGAAAATTATCTGCGCGATGTACCGCCAAAACCTTTAAGAGTAAAGAG 174
                      ***  ** *  ***** *  **        *  *   * ***  *  *   * * **  *

consensus_7465#0      ATAATTCTGTAGGAACATCTTGAAATAGATCGATACGGATGATGAATGATGATTGATATA 239
consensus_7465#1      GAAAGTGCG---AAACATT---GAATAAGT--ATGCAGTTAA--AGTGA-----GATTTT 219
                        ** *  *    *****     ****  *  ** * * * *  * ***     *** * 

consensus_7465#0      TGTAAATTTCGATCTTCTATAATAACATCAATTCTGTAGTTAGA-AAATTATCTGCGCGA 298
consensus_7465#1      TGCAAATTTGAAT--------AAACAAACTACTCTATACACACACAAACAATAAACATTA 271
                      ** ******  **        * *  * * * *** **   * * ***  **   *   *

consensus_7465#0      TGTACCGCCAAAACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAA-GACGATC 357
consensus_7465#1      -GTAC----ATTACCCGATGATATATGAGTTTCGGGTGAAGGAGTTCGTGAACGACGATC 326
                       ****    *  **************************************** *******

consensus_7465#0      ATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCAACTTCG 417
consensus_7465#1      ATGTGTAAAATGTGTATTTGAAGAAGTATAATGTGAATCTGAAAAACCAGTTCCACTTCG 386
                      ***************************************************** ******

consensus_7465#0      AACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATT 477
consensus_7465#1      AACAAATGATTCTTCTTCAGTATAGACTGGAGTAGTTCGTGAATAACCACTGCCAGGATT 446
                      ************************************************************

consensus_7465#0      GGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCC 537
consensus_7465#1      GGTATTTGATCTAGATCCCATAAAATAGCCTCCAAGAAATCCAGCACCTGCAGCTAGCCC 506
                      ************************************************************

consensus_7465#0      ATTAGATAACCATGAAGTAGACTGATCTTCTGATTTATTCCAATTCCATCGAGAACGTGA 597
consensus_7465#1      ATTAGATAACCAC----------------------------------------------- 519
                      ************                                                

consensus_7465#0      CTGTGATGGACCCATAACATTTGATGTCCAACCGTATTCTGGAGGTGCTGATGACGCTTG 657
consensus_7465#1      ------------------------------------------------------------
                                                                                  

consensus_7465#0      ACCTCTTCTTGTAGAATCGTCTTCATGATCATTGAAA 694
consensus_7465#1      -------------------------------------