cluster # 7469

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Schistosoma mansoni
cluster # 7469 cluster # 7469 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7469#0 length = 807 sequences # 3

consensus_7469#1 length = 276 sequences # 1
consensus_7469#2 length = 228 sequences # 1

consensusID : consensus_7469#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 807
fasta sequence

                              [CGACTGACTAATGATTTATTAGACTGTTTGTTAAGTACAAATTTTAAACATAGATGAAGTACAGTTGAAAGACCGACCAGCACAAAATCCAGCTAATGCCATTTCAGATGTCCCAGAGAGACAATAAGTTAATTTAGACACAGGTGGGGTTATTTTATAAATTTGAGAACGAATTCCTTGAGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGGTACAGAGACAAATTCAAAACCAGTTCCTCTCAAACGATCCATAGTATATGCGATAAGTGCAGATTCTAATTGTGCTAATGGTCCACTAAAATAATAAGTCTTATGCCCAGCGCCTAAAGTTGTATATTTTACACGGAGATAACCTTCAGGATTGATCGTTATGGAAGAGTCGGTATTATGATGATTGATTACAGGTTGATGTGAACCTGAGGTTATATTGATTACATCCAAAAGCTTCCACCTCTCTTCACGTTTAGATCCATGAATATATATATGACGTGCTTTGGACGAATCACCAATCGGAGTAAGCGGATGAGTAAAATTTGGTAATTGACATACTAATGACATTAGTTCATCATGTGTTTCCGTATGTTTTGTTTTAGTGTAATTTCTATAAAGATCCAGCATATGATCAAGATTTAAGTTGCTTTTACAAGCTGGTAATTTTCACGTAGATTATCAATGAACTTTCCATCATTAAATAAATCTAAATCAAAATGCGGTTGGAAGGATTTNAGATTGTTGACAATAATTGTGATGATTTAAATAAACACAAGAAATCTCATTAAATTTGCAAGG]

[-] EMBL CD124697             [CGACTGACTAATGATTTATTAGACTGTTTGTTAAGTACAAATTTTAAACATAGATGAAGTACAGTTGAAAGACCGACCAGCACAAAATCCAGCTAATGCCATTTCAGATGTCCCAGAGAGACAATAAGTTAATTTAGACACAGGTGGGGTTATTTTATAAATTTGAGAACGAATTCCTTGAGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGGTACAGAGACAAATTCAAAACCAGTTCCTCTCAAACGATCCATAGTATATGCGATAAGTGCAGATTCTAATTGTGCTAATGGTCCACTAAAATAATAAGTCTTATGCCCAGCGCCTAAAGTTGTATATTTTACACGGAGATAACCTTCAGGATTGATCGTTATGGAAGAGTCGGTATTATGATGATTGATTACAGGTTGATGTGAACCTGAGGTTATATTGATTACATTCAAAAGCTTCCACCTCTCTTCACGTTTAGATCCATGAATATATATATGACGTGCTTTGAACGAATCACCAATCGGAGTAAGCGGATGAGTAAAATTTGGTAATTGACATACTAATGACATTAGTT                                                                                                                                                                                                                                  ]
[-] EMBL CD112698             [                                                                                                                                               nTGGGTTTATTTTATAAATTTGAGAACGAATTCCTTGAGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGTTAGAATATCGGGTACAGAGACAAATTCAAAACCAGTTCCTCTCAAACGATCCATAGTATATGCGATAAGTGCAGATTCTAATTGTGCTAATGGTCCACTAAAATAATAAGTCTTATGCCCAGCGCCTAAAGTTGTATATTTTACACGGAGATAACCTTCAGAATTGATCGTTATGGAAGAGTCGGTATTATGATGATTGATTACAGGTTGATGTGAACCTGAGGTTATATTGATTACATCCAAAAGCTTCCACCTCTCTTCACGTTTAGATCCATGAATATATATTTGACGTGCTTTGGACGAATCACCAATCGGAGTAAGCGGATGAGTAAAATTTGGTAATTGACATACTAATGACATTAGTc                                                                                                                                                                                                                                  ]
[+] EMBL CD135683             [                                                                                                                                                        TTTTATAAATTTGAGAACGAATTCCTTGAGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGGTACAGAGACAAATTCAAAACCAGTTCCTCTCAAACGATCCATAGTATATGCGATAAGTGCAGATTCTAATTGTGCTAATGGTCCACTAAAATAATAAGTCTTATGCCCAGCGCCTAAAGTTGTATATTTTACACGGAGATAACCTTCAGGATTGATCGTTATGGAAGAGTCGGTATTATGATGATTGATTACAGGATGATGTGAACCTGAGGTTATATTGATTACATCCAAAAGCTTCCACCTCTCTTCACGTTTAGATCCATGAATATATATATGACGTGCTTTGGACGAATCACCAATCGGAGTAAGCGGATGAGTAAAATTTGGTAATTGACATACTAATGACATTAGTTCATCATGTGTTTCCGTATGTTTTGTTTTAGTGTAATTTCTATAAAGATCCAGCATATGATCAAGATTTAAGTTGCTTTTACAAGCTGGTAATTTTCACGTAGATTATCAATGAACTTTCCATCATTAAATAAATCTAAATCAAAATGCGGTTGGAAGGATTTNAGATTGTTGACAATAATTGTGATGATTTAAATAAACACAAGAAATCTCATTAAATTTGCAAGG]




>consensus_7469#0
CGACTGACTAATGATTTATTAGACTGTTTGTTAAGTACAAATTTTAAACATAGATGAAGT
ACAGTTGAAAGACCGACCAGCACAAAATCCAGCTAATGCCATTTCAGATGTCCCAGAGAG
ACAATAAGTTAATTTAGACACAGGTGGGGTTATTTTATAAATTTGAGAACGAATTCCTTG
AGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGGTACAGAGACAAA
TTCAAAACCAGTTCCTCTCAAACGATCCATAGTATATGCGATAAGTGCAGATTCTAATTG
TGCTAATGGTCCACTAAAATAATAAGTCTTATGCCCAGCGCCTAAAGTTGTATATTTTAC
ACGGAGATAACCTTCAGGATTGATCGTTATGGAAGAGTCGGTATTATGATGATTGATTAC
AGGTTGATGTGAACCTGAGGTTATATTGATTACATCCAAAAGCTTCCACCTCTCTTCACG
TTTAGATCCATGAATATATATATGACGTGCTTTGGACGAATCACCAATCGGAGTAAGCGG
ATGAGTAAAATTTGGTAATTGACATACTAATGACATTAGTTCATCATGTGTTTCCGTATG
TTTTGTTTTAGTGTAATTTCTATAAAGATCCAGCATATGATCAAGATTTAAGTTGCTTTT
ACAAGCTGGTAATTTTCACGTAGATTATCAATGAACTTTCCATCATTAAATAAATCTAAA
TCAAAATGCGGTTGGAAGGATTTNAGATTGTTGACAATAATTGTGATGATTTAAATAAAC
ACAAGAAATCTCATTAAATTTGCAAGG

consensusID : consensus_7469#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 276
fasta sequence

                              [AAGAGTCGGAAGATTGATTTGATTCATCTGGTTCATCATTCTTAGATGAAGTACAGTTGAAATGACCGACCAGCACAAAATCCAGCTAATGCCATTTCAGATGTCCCATAGAGACAATAAGTTAATTTAGACACAGGTGGGGTTATTTTATACATTTTGAGAACGAATTCCTTGAGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGGTACAGAGACAAATTCAGAACCGGTTCCTCTCAAACGATCCATAGTATATGCGAT]

[+] EMBL CD112766             [AAGAGTCGGAAGATTGATTTGATTCATCTGGTTCATCATTCTTAGATGAAGTACAGTTGAAATGACCGACCAGCACAAAATCCAGCTAATGCCATTTCAGATGTCCCATAGAGACAATAAGTTAATTTAGACACAGGTGGGGTTATTTTATACATTTTGAGAACGAATTCCTTGAGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGGTACAGAGACAAATTCAGAACCGGTTCCTCTCAAACGATCCATAGTATATGCGAT]




>consensus_7469#1
AAGAGTCGGAAGATTGATTTGATTCATCTGGTTCATCATTCTTAGATGAAGTACAGTTGA
AATGACCGACCAGCACAAAATCCAGCTAATGCCATTTCAGATGTCCCATAGAGACAATAA
GTTAATTTAGACACAGGTGGGGTTATTTTATACATTTTGAGAACGAATTCCTTGAGTTGG
GAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGGTACAGAGACAAATTCAGA
ACCGGTTCCTCTCAAACGATCCATAGTATATGCGAT

consensusID : consensus_7469#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 228
fasta sequence

                              [CAATTCTAGTACAAGTCGATCGAATTATTTAATCAGTCCGAATGCCAATTTCAATTTAGCTTGGCTTTCATATAATTGGCCTCATGCGTCAGCTGCTGGAATTTTAGCTGCTGGATTAATAACACATTTAGCACACTATCCTCCAGCTAGTGAACCGTTTCAATATTTGGATCGTTTTTTAACTGCACTCCATCTATGTTTAAAATTTGTACTTAACAAACAGTCTAA]

[+] EMBL CD124747             [CAATTCTAGTACAAGTCGATCGAATTATTTAATCAGTCCGAATGCCAATTTCAATTTAGCTTGGCTTTCATATAATTGGCCTCATGCGTCAGCTGCTGGAATTTTAGCTGCTGGATTAATAACACATTTAGCACACTATCCTCCAGCTAGTGAACCGTTTCAATATTTGGATCGTTTTTTAACTGCACTCCATCTATGTTTAAAATTTGTACTTAACAAACAGTCTAA]




>consensus_7469#2
CAATTCTAGTACAAGTCGATCGAATTATTTAATCAGTCCGAATGCCAATTTCAATTTAGC
TTGGCTTTCATATAATTGGCCTCATGCGTCAGCTGCTGGAATTTTAGCTGCTGGATTAAT
AACACATTTAGCACACTATCCTCCAGCTAGTGAACCGTTTCAATATTTGGATCGTTTTTT
AACTGCACTCCATCTATGTTTAAAATTTGTACTTAACAAACAGTCTAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7469#0      CGACTGACTAATGATTTATTAGACTGTTTGTTAAGTACAAATTTTAAACATAGATGAAGT 60
consensus_7469#1      -AAGAGTCGGAAGATTGATTTGA---TTCATCTGGTTCA----TCATTCTTAGATGAAGT 52
consensus_7469#2      --------------------------------------------CAATTCTAGTACAAGT 16
                                                                   *    ***   ****

consensus_7469#0      ACAGTTGAAA-GACCGACCAGCACAAAATCCAGCTA-ATGCCATTTCAGATGTCCCAGA- 117
consensus_7469#1      ACAGTTGAAATGACCGACCAGCACAAAATCCAGCTA-ATGCCATTTCAGATGTCCCATA- 110
consensus_7469#2      -CGATCGAATTATTTAATCAGTCCGAATGCCAATTTCAATTTAGCTTGGCTTTCATATAA 75
                       *  * ***       * ***  * **  ***  *  *    *  *  * * **  * * 

consensus_7469#0      --GAGACAATAAGTTAATT--TAGA--CACAGGTG--GGGTTATTTTATAAATTT-GAGA 168
consensus_7469#1      --GAGACAATAAGTTAATT--TAGA--CACAGGTG--GGGTTATTTTATACATTTTGAGA 162
consensus_7469#2      TTGGCCTCATGCGTCAGCTGCTGGAATTTTAGCTGCTGGATTAATA-ACACATTT--AGC 132
                        *     **  ** *  *  * **     ** **  ** *** *  * * ****  ** 

consensus_7469#0      ACGAATTCCTTGAGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGG 228
consensus_7469#1      ACGAATTCCTTGAGTTGGGAAACCACAAGCTCTGATAACAGGTTCAGGTAGAATATCGGG 222
consensus_7469#2      ACACTATCCTCCAGCTAGTGAACC----GTTTCAATATTTGGATC--GTTTTTTAACTGC 186
                      **    ****  ** * *  ****    * *   ***   ** **  **    ** * * 

consensus_7469#0      TACAGAGACAAATTCAAAACCAGTTCCTCTCAAACGATCCATAGTATATGCGATAAGTGC 288
consensus_7469#1      TACAGAGACAAATTCAGAACCGGTTCCTCTCAAACGATCCATAGTATATGCGAT------ 276
consensus_7469#2      ACTCCATCTATGTTTAAAATTTGTACTTAACAAACAGTCTAA------------------ 228
                           *   *  ** * **   ** * *  *****  ** *                   

consensus_7469#0      AGATTCTAATTGTGCTAATGGTCCACTAAAATAATAAGTCTTATGCCCAGCGCCTAAAGT 348
consensus_7469#1      ------------------------------------------------------------
consensus_7469#2      ------------------------------------------------------------
                                                                                  

consensus_7469#0      TGTATATTTTACACGGAGATAACCTTCAGGATTGATCGTTATGGAAGAGTCGGTATTATG 408
consensus_7469#1      ------------------------------------------------------------
consensus_7469#2      ------------------------------------------------------------
                                                                                  

consensus_7469#0      ATGATTGATTACAGGTTGATGTGAACCTGAGGTTATATTGATTACATCCAAAAGCTTCCA 468
consensus_7469#1      ------------------------------------------------------------
consensus_7469#2      ------------------------------------------------------------
                                                                                  

consensus_7469#0      CCTCTCTTCACGTTTAGATCCATGAATATATATATGACGTGCTTTGGACGAATCACCAAT 528
consensus_7469#1      ------------------------------------------------------------
consensus_7469#2      ------------------------------------------------------------
                                                                                  

consensus_7469#0      CGGAGTAAGCGGATGAGTAAAATTTGGTAATTGACATACTAATGACATTAGTTCATCATG 588
consensus_7469#1      ------------------------------------------------------------
consensus_7469#2      ------------------------------------------------------------
                                                                                  

consensus_7469#0      TGTTTCCGTATGTTTTGTTTTAGTGTAATTTCTATAAAGATCCAGCATATGATCAAGATT 648
consensus_7469#1      ------------------------------------------------------------
consensus_7469#2      ------------------------------------------------------------
                                                                                  

consensus_7469#0      TAAGTTGCTTTTACAAGCTGGTAATTTTCACGTAGATTATCAATGAACTTTCCATCATTA 708
consensus_7469#1      ------------------------------------------------------------
consensus_7469#2      ------------------------------------------------------------
                                                                                  

consensus_7469#0      AATAAATCTAAATCAAAATGCGGTTGGAAGGATTTNAGATTGTTGACAATAATTGTGATG 768
consensus_7469#1      ------------------------------------------------------------
consensus_7469#2      ------------------------------------------------------------
                                                                                  

consensus_7469#0      ATTTAAATAAACACAAGAAATCTCATTAAATTTGCAAGG 807
consensus_7469#1      ---------------------------------------
consensus_7469#2      ---------------------------------------