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These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7470#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 655 fasta sequence
[AGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACATTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAACAGCGATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGCAACTCGGATTACCTGTGTTTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATAACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGAAATGCTGACGGTAAACGGTCCAAAACATCAGGATCGTTAAATCGTCTTGT-ACACTGTTCACCTTTACATTATGGNGATTGNATAGTGCTNGTTGAATTGTGTGAAACCAGTGCTCCCAGACAGAGCTACTCAGGACAGA]
[+] EMBL CD189717 [AGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACATTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAACAGCGATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGT ]
[+] EMBL CD190263 [ AGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACATTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAACAGCGATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGCAACTCGGATTACCTGTGTTTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATAACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGAAATGCTGACGGTAAACGGTCCAAAACATCAGGATCGTTAAATCGTCTTGT ACACTGTTCACCTTTACATTATGGNGATTGNATAGTGCTNGTTGAATTGTGTGAAACCAGTGCTCCCAGACAGAGCTACTCAGGACAGA]
[-] EMBL CD112697 [ CTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGCAACTCGGATTACCTGTGTTTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATAACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGGAATGCTGACGGTAAACGGTCCAAAACATCAGGATCGTTAAATCGTCTTGTAACACTGTTCACCTTTACATTA ]
[+] EMBL CD181995 [ TTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATAACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGAAATGCTGACGGTAAACGGTCC AAACATCA ]
consensusID : consensus_7470#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 427 fasta sequence
[GATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGAATAACAAATGTACCGCTCAGTGTGAGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACACTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAAC]
[+] EMBL CD113661 [GATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCAAATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCACCATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTAGATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGAATAACAAATGTACCGCTCAGTGTGAGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACACTGGTAACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7470#0 AGAAATAAGAGTAGTACCCATATAGTATAGAAAACTTTTAGTGTTGTCCCAGTCAACAGA 60
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 GAGATATGCGGAAATGTTATCAGAATTACACTCCAGGTAAGTAACATTGTGCACATTGGT 120
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 AACTTGAACGAGACGCGATCAACAATCTCACCCCATATAATACGTCCTGCACAGTTGAAC 180
consensus_7470#1 ------------------------------------------------------------
consensus_7470#0 AGCGATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCA 240
consensus_7470#1 ---GATGAAGCTGTAGCCACAGCTGACAAAAACCTGTCATCGCTAATAAATGTTTGACCA 57
*********************************************************
consensus_7470#0 AATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCAC 300
consensus_7470#1 AATAGTTTGTACGCAGAAGTAATGATAGTGATTGGTATTATATCACAAAACATTATGCAC 117
************************************************************
consensus_7470#0 CATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTA 360
consensus_7470#1 CATAACAGATAAAAATCAATATAACGAAAAACTTGTTTTGGACTGATGTTGATTTCCCTA 177
************************************************************
consensus_7470#0 GATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTGCAACTCGGATTACCT 420
consensus_7470#1 GATAAGCCCGATTTGTCATTAAGTGAAGATGATGCCTTTGGGCTG-------AATAACAA 230
********************************************* ** **
consensus_7470#0 GTGTTTGAACCACTTACGCGTTTTGAAGTAGGTTTAGGACGTAATAACGCAAATCCAATA 480
consensus_7470#1 ATGT----ACCGCTCA-GTGTGA-GAAATAAGAGTAGTACCCA-TATAGTATA---GAAA 280
*** *** ** * * ** *** ** * *** ** * ** * * * * *
consensus_7470#0 ACTTGAATAGACAGCAAAATGCCGCCAAGTATGAGAAATGCTGACG-GTAAACGGTCCAA 539
consensus_7470#1 ACTTTTAGTGTTGTCC-----CAGTCAACAGAGAGATATGCGGAAATGTTATCAGAATTA 335
**** * * * * * *** **** **** ** ** * * * *
consensus_7470#0 AACATCAGGATCGTTAAATCGTCTTGTACACTGTTCACCTTTACATTATGGNGATTGNAT 599
consensus_7470#1 CACTCCAGGTAAGTAACATTGT---GCACACTGGTAACTTGAACGAGACG-CGATC-AAC 390
** **** ** * ** ** * ****** * ** * ** * * *** *
consensus_7470#0 AGTGCTNGTTGAATTGTGTGAAACCAGTGCTCCCAGACAGAGCTACTCAGGACAGA 655
consensus_7470#1 AAT-CTCACCCCATATAATACGTCCTGCACAGTTGAAC------------------ 427
* * ** ** * ** * * **
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| Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||