cluster # 7472

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Schistosoma mansoni
cluster # 7472 cluster # 7472 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7472#0 length = 732 sequences # 3

consensus_7472#1 length = 418 sequences # 2

consensusID : consensus_7472#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 732
fasta sequence

                              [CTGGTTTCTCCAGTATCTCAACTGATAGCTTGATCAATCGTATAATAGTATTTGTCGAAAGTTGTCCAAACAGGCTATATAATGGTCCTAAAGTCCCCATTCGGATACTACGATTATTATCGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAATCTTCTGGGAGAAAGGTGTGGTGGAGAATCTTTATAATAAAAAATTCTAGGACTTGAATTTGCCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCAACGCTATTTGTTTCAGAGGGGGGGTCACACCCAATTATAAAAAAANNNNAAACTGATGAGCATTTTTAGACCAGCCAGAGAGAGAGGAAGACTTCCTATCAAATAAATTATCTCTGTGGTGTTTTGGATGACTTTATCTTTCGTTCTCAGCTCTTCATCTTTGGACACGTTTCTATACCTATGTCCCGTTGATGGTGCCAGCATCTGGGATCGCACATCATTCAAATCAATGTCGCTCCATCCATAGCAACGAGTAAATAAATAAAATACCAACCAGTCTAGATCTTCGTTTACTGTCCAAATGCCTCCGCAATCTCTGCATATACGACTTAAAATCCTAAAGAATGTTTTCATGCCGCTTGTTTCAGATACATTGCTATTTAACGTATTGATTTCCATACTATTAAAAGATGTAGCATGTGTGAGCAATCGTG]

[+] EMBL CD162922             [CTGGTTTCTCCAGTATCTCAACTGATAGCTTGATCAATCGTATAATAGTATTTGTCGAAAGTTGTCCAAACAGGCTATATAATGGTCCTAAAGTCCCCATTCGGATACTACGATTATTATCGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAATCTTCTGGGAGAAAGGTGTGGTGGAGAATCTTTATAATAAAAAATTCTAGGACTTGAATTTGCCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCAACGCTATTTGTTTCAGAGGGGGGGTCACACCCAATTATAAAAAAANNNNAAACTGATGAGCATTTTTAGACCAGCCAGAGAGAGAGGAAGACTTCCTATCAAATAAATTATCTCTGTGGTGTT                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CD170734             [                                                                                                                                                                                                                                                                                                                                                                     GCATTTTTAGACCAGCCAGAGAGAGAGGAAGACTTCTTATCAGATAAATAATCTCTGTGGTGNTTTGGATGACTTTATCTTTCGTTCTCAGCTCTTCATCTTTGGACACGTTTCTATACCTATGTCCCGTTGATGGTGCCAGCATCTGGGATCGCACATCATTCAAATCAATGTCGCTCCATCCATAGCAACGAGTAAATAAATAAAATACCAACCAGTCTAGATCTTCGTTTACTGTCCAAATGCCTCCGCAATCTCTGCATATACGACTTAAAATCCTAAAGAATGTTTTCATGCCGCTTGTTTCAGATACATTGCTATTTAACGTATTGATTTCCATACTATTAAAAGATGTAGCATGTGTGAGCAATCGTG]
[-] EMBL CD192375             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ATGTCGCTCCATCCATAGCAACGAGTAAATAAATAAAATACCAACCAGTCTAGATCTTCGTTTACTGTCCAAATGCCTCCGCAATCTCTGCATATACGACTTAAAATCCTAAAGAATGTTTTCATGCCGCTTGTTTCAGATACATTGCTATTTAACGTATTGATTTCCATACTAT                              ]




>consensus_7472#0
CTGGTTTCTCCAGTATCTCAACTGATAGCTTGATCAATCGTATAATAGTATTTGTCGAAA
GTTGTCCAAACAGGCTATATAATGGTCCTAAAGTCCCCATTCGGATACTACGATTATTAT
CGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAAT
CTTCTGGGAGAAAGGTGTGGTGGAGAATCTTTATAATAAAAAATTCTAGGACTTGAATTT
GCCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCAAC
GCTATTTGTTTCAGAGGGGGGGTCACACCCAATTATAAAAAAANNNNAAACTGATGAGCA
TTTTTAGACCAGCCAGAGAGAGAGGAAGACTTCCTATCAAATAAATTATCTCTGTGGTGT
TTTGGATGACTTTATCTTTCGTTCTCAGCTCTTCATCTTTGGACACGTTTCTATACCTAT
GTCCCGTTGATGGTGCCAGCATCTGGGATCGCACATCATTCAAATCAATGTCGCTCCATC
CATAGCAACGAGTAAATAAATAAAATACCAACCAGTCTAGATCTTCGTTTACTGTCCAAA
TGCCTCCGCAATCTCTGCATATACGACTTAAAATCCTAAAGAATGTTTTCATGCCGCTTG
TTTCAGATACATTGCTATTTAACGTATTGATTTCCATACTATTAAAAGATGTAGCATGTG
TGAGCAATCGTG

consensusID : consensus_7472#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 418
fasta sequence

                              [CTGGTTTCTCCAGTATCTCAACTGATAGCTTGATCAATCGTATAATAGTATTTGTCGAAAGCTGTCCAAACAGGCTATATAATGGTCCTAAAGTCCCCATTCGGATACTACGATTATTATCGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAATCTTCTGGGAGAAATAGCTGTGTTGTAGAACTTTTTTGAGTAAATCTAGGACTTGCAGTTGCCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCAACGCTATTTGTTTTCAAGTGTGGTGCATTCCACGAGCTAAATTCATAGAACTGATGAGCATTTTTAGACCAGCCAGAGAGAGAGGAAGACTTCTTATCAAATAAATTATCTCTGTGGTGGT]

[+] EMBL CD162994             [CTGGTTTCTCCAGTATCTCAACTGATAGCTTGATCAATCGTATAATAGTATTTGTCGAAAGCTGTCCAAACAGGCTATATAATGGTCCTAAAGTCCCCATTCGGATACTACGATTATTATCGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAATCTTCTGGGAGAAATAGCTGTGTTGTAGAACTTTTTTGAGTAAATCTAGGACTTGCAGTTGCCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCAACGCTATTTGTTTTCAAGTGTGGTGCATTCCACGAGCTAAATTCATAGAACTGATGAGCATTTTTAGACCAGCCAGAGAGAGAGGAAGACTTCTTATCAAATAAATTATCTCTGTGGTGGT]
[+] EMBL BG931902             [                                                                                    GTCCTAAAGTCCCCATTCGGATACTACGATTATTATCGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAATCTTCTGGGAGAAATGGCTGTGTTGTAGAACTTTTTTGAGTAAATCTAGGACTTGCAGTTGCCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCAACGCTATTTGTTTTCGAGTGTGGTGCATTCCACGAGCTAAATTCATAGAACTGATGAGCATTTTTAG                                                      ]




>consensus_7472#1
CTGGTTTCTCCAGTATCTCAACTGATAGCTTGATCAATCGTATAATAGTATTTGTCGAAA
GCTGTCCAAACAGGCTATATAATGGTCCTAAAGTCCCCATTCGGATACTACGATTATTAT
CGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAAT
CTTCTGGGAGAAATAGCTGTGTTGTAGAACTTTTTTGAGTAAATCTAGGACTTGCAGTTG
CCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCAACG
CTATTTGTTTTCAAGTGTGGTGCATTCCACGAGCTAAATTCATAGAACTGATGAGCATTT
TTAGACCAGCCAGAGAGAGAGGAAGACTTCTTATCAAATAAATTATCTCTGTGGTGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7472#0      CTGGTTTCTCCAGTATCTCAACTGATAGCTTGATCAATCGTATAATAGTATTTGTCGAAA 60
consensus_7472#1      CTGGTTTCTCCAGTATCTCAACTGATAGCTTGATCAATCGTATAATAGTATTTGTCGAAA 60
                      ************************************************************

consensus_7472#0      GTTGTCCAAACAGGCTATATAATGGTCCTAAAGTCCCCATTCGGATACTACGATTATTAT 120
consensus_7472#1      GCTGTCCAAACAGGCTATATAATGGTCCTAAAGTCCCCATTCGGATACTACGATTATTAT 120
                      * **********************************************************

consensus_7472#0      CGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAAT 180
consensus_7472#1      CGGTACAACAATTCCAAATAAGATCTTTTACCGTCATAAACATGCTTTCTGGAGTTGAAT 180
                      ************************************************************

consensus_7472#0      CTTCTGGGAGAAA--GGTGTGGTGGAGAATCTTTATAATAAAAAATTCTAGGACTTGAAT 238
consensus_7472#1      CTTCTGGGAGAAATAGCTGTGTTGTAGAACTTTTTTGAGTAAA---TCTAGGACTTGCAG 237
                      *************  * **** ** ****  *** * *  ***   *********** * 

consensus_7472#0      TTGCCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCA 298
consensus_7472#1      TTGCCTTCACACCTCCGCCATCCGTTTGTAATCCAAACGTCAACCAATCGACAGCATGCA 297
                      ************************************************************

consensus_7472#0      ACGCTATTTGTTTCAGAGGGGGGGTCACACCCAATTATAAAAAAANNNNAAACTGATGAG 358
consensus_7472#1      ACGCTATTTGTTTTCAAGTGTGG--TGCATTCCACGAGCTAAATTCATAGAACTGATGAG 355
                      *************   ** * **    **  * *  *   ***       **********

consensus_7472#0      CATTTTTAGACCAGCCAGAGAGAGAGGAAGACTTCCTATCAAATAAATTATCTCTGTGGT 418
consensus_7472#1      CATTTTTAGACCAGCCAGAGAGAGAGGAAGACTTCTTATCAAATAAATTATCTCTGTGGT 415
                      *********************************** ************************

consensus_7472#0      GTTTTGGATGACTTTATCTTTCGTTCTCAGCTCTTCATCTTTGGACACGTTTCTATACCT 478
consensus_7472#1      GGT--------------------------------------------------------- 418
                      * *                                                         

consensus_7472#0      ATGTCCCGTTGATGGTGCCAGCATCTGGGATCGCACATCATTCAAATCAATGTCGCTCCA 538
consensus_7472#1      ------------------------------------------------------------
                                                                                  

consensus_7472#0      TCCATAGCAACGAGTAAATAAATAAAATACCAACCAGTCTAGATCTTCGTTTACTGTCCA 598
consensus_7472#1      ------------------------------------------------------------
                                                                                  

consensus_7472#0      AATGCCTCCGCAATCTCTGCATATACGACTTAAAATCCTAAAGAATGTTTTCATGCCGCT 658
consensus_7472#1      ------------------------------------------------------------
                                                                                  

consensus_7472#0      TGTTTCAGATACATTGCTATTTAACGTATTGATTTCCATACTATTAAAAGATGTAGCATG 718
consensus_7472#1      ------------------------------------------------------------
                                                                                  

consensus_7472#0      TGTGAGCAATCGTG 732
consensus_7472#1      --------------