cluster # 7475

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Schistosoma mansoni
cluster # 7475 cluster # 7475 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7475#0 length = 755 sequences # 3

consensus_7475#1 length = 524 sequences # 2

consensusID : consensus_7475#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 755
fasta sequence

                              [CCTTATTCGGCACGACGCGGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTGGTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAATAAAGCCTTTCTAACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCTCTCACACATCATGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAATGTTACACCCAAATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTATAGCTTTTTTCAATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATGGCTCACTCCCTCTNTTTGGCACATATACAATCATA]

[+] EMBL CD081811             [CCTTATTCGGCACGACGCGGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTGGTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAATAAAGCCTTTCTAACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCTCTCACACATCATGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAATGTTACACCCAAATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTATAGCTTTTTTCAATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATGGCTCACTCCCTCTNTTTGGCACATATACAATCATA]
[-] EMBL CD075542             [                  GGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTGGTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAATAAAGCCTTTCTAACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCTCTCACACATCATGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAATGTTACACCCAAATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTATAGCTTTTTTCAATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATGGCTCACTCCCTCTTTTTGGCACAGATA        ]
[+] EMBL CD062288             [                                                                                                                                  GAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGAAGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTGGTAGTCACTGATGAATCCG                                                                                                                                                                                                                                                                                                                 ]




>consensus_7475#0
CCTTATTCGGCACGACGCGGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATG
AGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAA
TTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAAT
CACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATG
GTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCT
TAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTG
ATATATGGCAAGAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATA
CAGCTGATGTGGTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAAT
AAAGCCTTTCTAACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCT
CTCACACATCATGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAA
TGTTACACCCAAATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTAT
AGCTTTTTTCAATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATG
GCTCACTCCCTCTNTTTGGCACATATACAATCATA

consensusID : consensus_7475#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 524
fasta sequence

                              [CCAAGACTTGATATACATGACGGTTATGGAGGTGTTTATGAGAATGAACCTGAAAAATTTGAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAAGAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGTATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGCTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATAT]

[+] EMBL CD179618             [CCAAGACTTGATATACATGACGGTTATGGAGGTGTTTATGAGAATGAACCTGAAAAATTTGAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAAGAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGTATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACAACAGGAAGTAACAAGACTATTTTATTGGCTGAAGATGGTCATACAAATGGTAATGGCGATGGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAAAAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATAT]
[+] EMBL CD179633             [CCAAAACTTGATATACATGACAGTTGTGGAGGTGTTTATGAGAATGAACCTGAAAAATTTGAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAAGAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGTATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGACGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTGAAATGGGCATCTGAAGCGAGAAACAGATTCATACAGGAAGCATCTAAATCA                                                                                                                                                                             ]




>consensus_7475#1
CCAAGACTTGATATACATGACGGTTATGGAGGTGTTTATGAGAATGAACCTGAAAAATTT
GAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAA
GAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGT
ATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGA
CGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTG
AAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACA
ACAGGAAGTAACAAGACTATTTTATTGGCTGAAGATGGTCATACAAATGGTAATGGCGAT
GGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAA
AAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7475#0      ------------------------------------------------------------
consensus_7475#1      CCAAGACTTGATATACATGACGGTTATGGAGGTGTTTATGAGAATGAACCTGAAAAATTT 60
                                                                                  

consensus_7475#0      ------------------------------------------------------------
consensus_7475#1      GAAAATATCGCTAGAGCTGGTGAAACAAAAAACGATTTACCATCTGGTGTAAGTGCTAAA 120
                                                                                  

consensus_7475#0      -------------------------------------------------CCTTATTCGGC 11
consensus_7475#1      GAAAGACGTGAATTATTTTTAAAGAAAGCTGCTGATACTTCTGTTGTAAAGAGAGATAGT 180
                                                                           *    * 

consensus_7475#0      ACGACGCGGCACGAGGTTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGA 71
consensus_7475#1      ATAAAACTTATAGATATTAATGCTGCCGAAAGTGGAATATATGAAAATGAGCCAACTCGA 240
                      *  *  *     **  ********************************************

consensus_7475#0      CGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTG 131
consensus_7475#1      CGTGATAATGTAGTCCGTTATGATGACGATCAAACAGATGACTATCCAATTAATTCTGTG 300
                      ************************************************************

consensus_7475#0      AAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACA 191
consensus_7475#1      AAATGGGCATCTGAAGCGAAAAACAGATTCATACAGGAAGCATCTAAATCACAGATAACA 360
                      ************************************************************

consensus_7475#0      ACAGGAAGTAACAAGACTATTTTATTGGTTGAAGATGGTCATACAAATGGTAATGGCGAT 251
consensus_7475#1      ACAGGAAGTAACAAGACTATTTTATTGGCTGAAGATGGTCATACAAATGGTAATGGCGAT 420
                      **************************** *******************************

consensus_7475#0      GGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAA 311
consensus_7475#1      GGTGCATCAAAACAAGCACGATATACTACACAAGCTAAACAAGCCTTCTTAGAACGTCAA 480
                      ************************************************************

consensus_7475#0      AAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATATCATTGATATATGGCAA 371
consensus_7475#1      AAACAAGCGGAAGAAGCTGCAAAGAACAAAAGTCGACCAGATAT---------------- 524
                      ********************************************                

consensus_7475#0      GAACAATGCCCACACAGTGGAGTATTTGAAAATGTACCAGCTGCTCATACAGCTGATGTG 431
consensus_7475#1      ------------------------------------------------------------
                                                                                  

consensus_7475#0      GTAGTCACTGATGAATCCGAAGAAGACGATGAGGAAGAGGAGGAGCAATAAAGCCTTTCT 491
consensus_7475#1      ------------------------------------------------------------
                                                                                  

consensus_7475#0      AACCAAAAAAGTTTTATCGAATTCGTATTACCCACACATAAAATACGCTCTCACACATCA 551
consensus_7475#1      ------------------------------------------------------------
                                                                                  

consensus_7475#0      TGTATACACTTGGAAGTATTATGTAAACCAGATGAATAATTGGTGACAATGTTACACCCA 611
consensus_7475#1      ------------------------------------------------------------
                                                                                  

consensus_7475#0      AATTCCGAAGAAATGACTTAACATTTCTAAGGAAGGTGCATGCATGTATAGCTTTTTTCA 671
consensus_7475#1      ------------------------------------------------------------
                                                                                  

consensus_7475#0      ATCCATCTGCACATCTAGATATTTGAGAACTAAGCTTGATTGAGCCATGGCTCACTCCCT 731
consensus_7475#1      ------------------------------------------------------------
                                                                                  

consensus_7475#0      CTNTTTGGCACATATACAATCATA 755
consensus_7475#1      ------------------------