cluster # 7478

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Schistosoma mansoni
cluster # 7478 cluster # 7478 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7478#0 length = 714 sequences # 3

consensus_7478#1 length = 546 sequences # 1
consensus_7478#2 length = 213 sequences # 1

consensusID : consensus_7478#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 714
fasta sequence

                              [TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGTATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTTCTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACTTTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTCCTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTTCCCAGGTACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGACTGGGTTGGTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTTCCTTTGTGTATGTTGAGGTCTATTGATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCTGTATTTGTTCGTGTGTATGAGATAGGAGGGCTAAGTCATCTGTGAAGTCCAAATCGTCTAATTGTTTCTGAGATGTCCATTGTATTCCGTGCTTCCACTCAGTTGTCGAGGTCTTCATAATCCAGTCAATTACCAGAAGGAAGAGGAATGGGGAGAGTAGACAGCCTTGTCTGATTCCGGTCCTTCAGTTTCACGTTGGCAAACACCAGGTGGTGGTTGTGATCGGAAGCTAAGCCAACTCCTCTCCTGGTTCTCAC]

[+] EMBL CD159472             [TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGTATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTTCTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACTTTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTCCTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTTCCCAGGTACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGACTGGGTTGGTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTTCCTTTGTGTATGTTGAGGTCTATTGATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCT                                                                                                                                                                                                                                                                 ]
[+] EMBL CD159525             [TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGTATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTTCTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACTTTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTCCTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTTCCCAGGTACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGACTGGGTTGGTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTT                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CD159523             [                                                                                                                                                                                                                                                                                                                                            AGTTTCTCCATCAAGTGTGACTGGGTTGGTGTCCTCCGTGTTGTATTTGGGAATCTAACTTGTTCCTTTGTGTATGTTGAGGTCTATTGATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCTGTATTTGTTCGTGTGTATGAGATAGGAGGGCTAAGTCATCTGTGAAGTCCAAATCGTCTAATTGTTTCTGAGATGTCCATTGTATTCCGTGCTTCCACTCAGTTGTCGAGGTCTTCATAATCCAGTCAATTACCAGAAGGAAGAGGAATGGGGAGAGTAGACAGCCTTGTCTGATTCCGGTCCTTCAGTTTCACGTTGGCAAACACCAGGTGGTGGTTGTGATCGGAAGCTAAGCCAACTCCTCTCCTGGTTCTCAC]




>consensus_7478#0
TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGT
ATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTT
CTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACT
TTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTC
CTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTT
CCCAGGTACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGACTGGGTTG
GTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTTCCTTTGTGTATGTTGAGGTCTATT
GATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCTGTATTTGTTCGTGTGTATGAGAT
AGGAGGGCTAAGTCATCTGTGAAGTCCAAATCGTCTAATTGTTTCTGAGATGTCCATTGT
ATTCCGTGCTTCCACTCAGTTGTCGAGGTCTTCATAATCCAGTCAATTACCAGAAGGAAG
AGGAATGGGGAGAGTAGACAGCCTTGTCTGATTCCGGTCCTTCAGTTTCACGTTGGCAAA
CACCAGGTGGTGGTTGTGATCGGAAGCTAAGCCAACTCCTCTCCTGGTTCTCAC

consensusID : consensus_7478#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [CTATAGGTTAGTTGATAATAAATTCTTTTTTCAGACAAACCATTTAACTTGGATAATTCAGTATCTCTACAAAAAAAACATTAATTTTTTTATGCAAACTTGCTACTTGTATTAGTAAGTTATTTAACTTCATAATAAGAATATTTATTTCATCTTACTCTATTCATATATATTTATGATACATTCTTCATTATTACTTACGCCTATCAACCCTCGTGGAGGAGCATAAGCCGCACACCGGTATTCTCCAACTAACCTAGTCCTGGGAGATGCTTTCCAGTTCTCTCCAGTTGTTATTCATCCTTTTCATATCTGCTTCAATCTCCTGGCGTAATGTGCTATTCGGCCTTCCACTTTTCCGCTTCCCTTCACCATTCCAAGTTAAAGATTGCCTCGTGGTTCTGTTTGGTGATTAACTTAGTGTATGACCTATCCACTTCCAACGTCTTTTCTTAATTTCATCTTCAGCTGGAAGCTAGTTTGTCCTCTCCCATAAAACGTTGTTGCTGATAGTATCCGACCAGTGAATGTTGAGTATTTTGCATA]

[+] EMBL CD114041             [CTATAGGTTAGTTGATAATAAATTCTTTTTTCAGACAAACCATTTAACTTGGATAATTCAGTATCTCTACAAAAAAAACATTAATTTTTTTATGCAAACTTGCTACTTGTATTAGTAAGTTATTTAACTTCATAATAAGAATATTTATTTCATCTTACTCTATTCATATATATTTATGATACATTCTTCATTATTACTTACGCCTATCAACCCTCGTGGAGGAGCATAAGCCGCACACCGGTATTCTCCAACTAACCTAGTCCTGGGAGATGCTTTCCAGTTCTCTCCAGTTGTTATTCATCCTTTTCATATCTGCTTCAATCTCCTGGCGTAATGTGCTATTCGGCCTTCCACTTTTCCGCTTCCCTTCACCATTCCAAGTTAAAGATTGCCTCGTGGTTCTGTTTGGTGATTAACTTAGTGTATGACCTATCCACTTCCAACGTCTTTTCTTAATTTCATCTTCAGCTGGAAGCTAGTTTGTCCTCTCCCATAAAACGTTGTTGCTGATAGTATCCGACCAGTGAATGTTGAGTATTTTGCATA]




>consensus_7478#1
CTATAGGTTAGTTGATAATAAATTCTTTTTTCAGACAAACCATTTAACTTGGATAATTCA
GTATCTCTACAAAAAAAACATTAATTTTTTTATGCAAACTTGCTACTTGTATTAGTAAGT
TATTTAACTTCATAATAAGAATATTTATTTCATCTTACTCTATTCATATATATTTATGAT
ACATTCTTCATTATTACTTACGCCTATCAACCCTCGTGGAGGAGCATAAGCCGCACACCG
GTATTCTCCAACTAACCTAGTCCTGGGAGATGCTTTCCAGTTCTCTCCAGTTGTTATTCA
TCCTTTTCATATCTGCTTCAATCTCCTGGCGTAATGTGCTATTCGGCCTTCCACTTTTCC
GCTTCCCTTCACCATTCCAAGTTAAAGATTGCCTCGTGGTTCTGTTTGGTGATTAACTTA
GTGTATGACCTATCCACTTCCAACGTCTTTTCTTAATTTCATCTTCAGCTGGAAGCTAGT
TTGTCCTCTCCCATAAAACGTTGTTGCTGATAGTATCCGACCAGTGAATGTTGAGTATTT
TGCATA

consensusID : consensus_7478#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [GTTTCTCCATCAAGTGTGATTGGGTTGGTGTTCTCCGTGTTGCATTTGAGAATCTTGCTTTTTCCTTTGTGTATGTTGAGACCTATTGATGCAGAGGCTGCTGATGCATTTGTTGTCTTCGTCAATATTTGTTCGTGTGTATGAGATAGGAGGGCTAGGTCATCTGCGAAGTCCAAATCGTCTAATTGATTCAAAGATGTCCATTGTATTTCA]

[-] EMBL CD089932             [GTTTCTCCATCAAGTGTGATTGGGTTGGTGTTCTCCGTGTTGCATTTGAGAATCTTGCTTTTTCCTTTGTGTATGTTGAGACCTATTGATGCAGAGGCTGCTGATGCATTTGTTGTCTTCGTCAATATTTGTTCGTGTGTATGAGATAGGAGGGCTAGGTCATCTGCGAAGTCCAAATCGTCTAATTGATTCAAAGATGTCCATTGTATTTCA]




>consensus_7478#2
GTTTCTCCATCAAGTGTGATTGGGTTGGTGTTCTCCGTGTTGCATTTGAGAATCTTGCTT
TTTCCTTTGTGTATGTTGAGACCTATTGATGCAGAGGCTGCTGATGCATTTGTTGTCTTC
GTCAATATTTGTTCGTGTGTATGAGATAGGAGGGCTAGGTCATCTGCGAAGTCCAAATCG
TCTAATTGATTCAAAGATGTCCATTGTATTTCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7478#0      TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGT 60
consensus_7478#2      ------------------------------------------------------------
consensus_7478#1      ------------------------------------------------------------
                                                                                  

consensus_7478#0      ATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTT 120
consensus_7478#2      ------------------------------------------------------------
consensus_7478#1      --------------------------------CTATAGGTTAGTTGATAATAAATTCTTT 28
                                                                                  

consensus_7478#0      CTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACT 180
consensus_7478#2      ------------------------------------------------------------
consensus_7478#1      TTTCAGACAAACCATTTAACTTGGATAATTCAGTATCTCTACAAAAAAAACATTAATTTT 88
                                                                                  

consensus_7478#0      TTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTC 240
consensus_7478#2      ------------------------------------------------------------
consensus_7478#1      TTTATGCAAACTTGCTACTTGTATTAGTAAGTTATTTAACTTCATAATAAGAATATTTAT 148
                                                                                  

consensus_7478#0      CTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTT 300
consensus_7478#2      ------------------------------------------------------------
consensus_7478#1      TTCATCTTAC---TCTATTCATATATATTTATGATACATTCTTCATTATTACTTACGCCT 205
                                                                                  

consensus_7478#0      CCCAGGT---ACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGA-CTGG 356
consensus_7478#2      ------------------------------------GTTTCTCCATCAAGTGTGA-TTGG 23
consensus_7478#1      ATCAACCCTCGTGGAGGAGCATAAGCCGCACACCGGTATTCTCCAACTAACCTAGTCCTG 265
                                                            ******* * *   *      *

consensus_7478#0      GTTGGTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTTCCTTTGTGTATGTTGAGGTC 416
consensus_7478#2      GTTGGTGTTCTCCGTGTTGCATTTGAGAATCTTGCTTTTTCCTTTGTGTATGTTGAGACC 83
consensus_7478#1      GGAGATGCTTTCCA-GTTCTCTCCAGTTGTTATTCATCCTT-TTCATATCTGCTTCAATC 323
                      *  * **   ***  ***   *       *  * * *  *  **  * * ** *     *

consensus_7478#0      TATTGATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCTGTATTTGTTCGTGTGTATG 476
consensus_7478#2      TATTGATGCAGAGGCTGCTGATGCATTTGTTGTCTTCGTCAATATTTGTTCGTGTGTATG 143
consensus_7478#1      TCCTGGCGTAATGTGCTATTCGGCCTTCCACTTTTCCGCTTCCCTTCACCATTCCAAGTT 383
                      *  **  *    *     *    * **     * * **      **      *     * 

consensus_7478#0      AGATAGGAGGGCTAAGTCATCTGTGAAGTCCAA--------ATCGTCTAATTGTTTCTGA 528
consensus_7478#2      AGATAGGAGGGCTAGGTCATCTGCGAAGTCCAA--------ATCGTCTAATTGATTCAAA 195
consensus_7478#1      AAAGATTGCCTCGTGGTTCTGTTTGGTGATTAACTTAGTGTATGACCTATCCACTTCCAA 443
                      * * *      *   **  * *  *  *   **        **   ***     ***  *

consensus_7478#0      GATGTCCATTGTATTCCGTGCTTC-CACTCAGTTGTCGAGGTCTTCATAATCCAGTCAAT 587
consensus_7478#2      GATGTCCATTGTATTTCA------------------------------------------ 213
consensus_7478#1      CGTCTTTTCTTAATTTCATCTTCAGCTGGAAGCTAGTTTGTCCTCTCCCATAAAACGTTG 503
                        * *    *  *** *                                           

consensus_7478#0      TACCAGAAGGAAGAGGAATGGGGAGAGTAGACAGCCTTGTCTGATTCCGGTCCTTCAGTT 647
consensus_7478#2      ------------------------------------------------------------
consensus_7478#1      TTGCTGATAGTATCCGACCAGTGAATGTTGAGTATTTTGCATA----------------- 546
                                                                                  

consensus_7478#0      TCACGTTGGCAAACACCAGGTGGTGGTTGTGATCGGAAGCTAAGCCAACTCCTCTCCTGG 707
consensus_7478#2      ------------------------------------------------------------
consensus_7478#1      ------------------------------------------------------------
                                                                                  

consensus_7478#0      TTCTCAC 714
consensus_7478#2      -------
consensus_7478#1      -------