These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7478#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 714 fasta sequence [TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGTATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTTCTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACTTTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTCCTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTTCCCAGGTACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGACTGGGTTGGTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTTCCTTTGTGTATGTTGAGGTCTATTGATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCTGTATTTGTTCGTGTGTATGAGATAGGAGGGCTAAGTCATCTGTGAAGTCCAAATCGTCTAATTGTTTCTGAGATGTCCATTGTATTCCGTGCTTCCACTCAGTTGTCGAGGTCTTCATAATCCAGTCAATTACCAGAAGGAAGAGGAATGGGGAGAGTAGACAGCCTTGTCTGATTCCGGTCCTTCAGTTTCACGTTGGCAAACACCAGGTGGTGGTTGTGATCGGAAGCTAAGCCAACTCCTCTCCTGGTTCTCAC] [+] EMBL CD159472 [TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGTATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTTCTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACTTTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTCCTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTTCCCAGGTACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGACTGGGTTGGTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTTCCTTTGTGTATGTTGAGGTCTATTGATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCT ] [+] EMBL CD159525 [TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGTATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTTCTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACTTTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTCCTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTTCCCAGGTACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGACTGGGTTGGTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTT ] [-] EMBL CD159523 [ AGTTTCTCCATCAAGTGTGACTGGGTTGGTGTCCTCCGTGTTGTATTTGGGAATCTAACTTGTTCCTTTGTGTATGTTGAGGTCTATTGATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCTGTATTTGTTCGTGTGTATGAGATAGGAGGGCTAAGTCATCTGTGAAGTCCAAATCGTCTAATTGTTTCTGAGATGTCCATTGTATTCCGTGCTTCCACTCAGTTGTCGAGGTCTTCATAATCCAGTCAATTACCAGAAGGAAGAGGAATGGGGAGAGTAGACAGCCTTGTCTGATTCCGGTCCTTCAGTTTCACGTTGGCAAACACCAGGTGGTGGTTGTGATCGGAAGCTAAGCCAACTCCTCTCCTGGTTCTCAC] consensusID : consensus_7478#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 546 fasta sequence [CTATAGGTTAGTTGATAATAAATTCTTTTTTCAGACAAACCATTTAACTTGGATAATTCAGTATCTCTACAAAAAAAACATTAATTTTTTTATGCAAACTTGCTACTTGTATTAGTAAGTTATTTAACTTCATAATAAGAATATTTATTTCATCTTACTCTATTCATATATATTTATGATACATTCTTCATTATTACTTACGCCTATCAACCCTCGTGGAGGAGCATAAGCCGCACACCGGTATTCTCCAACTAACCTAGTCCTGGGAGATGCTTTCCAGTTCTCTCCAGTTGTTATTCATCCTTTTCATATCTGCTTCAATCTCCTGGCGTAATGTGCTATTCGGCCTTCCACTTTTCCGCTTCCCTTCACCATTCCAAGTTAAAGATTGCCTCGTGGTTCTGTTTGGTGATTAACTTAGTGTATGACCTATCCACTTCCAACGTCTTTTCTTAATTTCATCTTCAGCTGGAAGCTAGTTTGTCCTCTCCCATAAAACGTTGTTGCTGATAGTATCCGACCAGTGAATGTTGAGTATTTTGCATA] [+] EMBL CD114041 [CTATAGGTTAGTTGATAATAAATTCTTTTTTCAGACAAACCATTTAACTTGGATAATTCAGTATCTCTACAAAAAAAACATTAATTTTTTTATGCAAACTTGCTACTTGTATTAGTAAGTTATTTAACTTCATAATAAGAATATTTATTTCATCTTACTCTATTCATATATATTTATGATACATTCTTCATTATTACTTACGCCTATCAACCCTCGTGGAGGAGCATAAGCCGCACACCGGTATTCTCCAACTAACCTAGTCCTGGGAGATGCTTTCCAGTTCTCTCCAGTTGTTATTCATCCTTTTCATATCTGCTTCAATCTCCTGGCGTAATGTGCTATTCGGCCTTCCACTTTTCCGCTTCCCTTCACCATTCCAAGTTAAAGATTGCCTCGTGGTTCTGTTTGGTGATTAACTTAGTGTATGACCTATCCACTTCCAACGTCTTTTCTTAATTTCATCTTCAGCTGGAAGCTAGTTTGTCCTCTCCCATAAAACGTTGTTGCTGATAGTATCCGACCAGTGAATGTTGAGTATTTTGCATA] consensusID : consensus_7478#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 213 fasta sequence [GTTTCTCCATCAAGTGTGATTGGGTTGGTGTTCTCCGTGTTGCATTTGAGAATCTTGCTTTTTCCTTTGTGTATGTTGAGACCTATTGATGCAGAGGCTGCTGATGCATTTGTTGTCTTCGTCAATATTTGTTCGTGTGTATGAGATAGGAGGGCTAGGTCATCTGCGAAGTCCAAATCGTCTAATTGATTCAAAGATGTCCATTGTATTTCA] [-] EMBL CD089932 [GTTTCTCCATCAAGTGTGATTGGGTTGGTGTTCTCCGTGTTGCATTTGAGAATCTTGCTTTTTCCTTTGTGTATGTTGAGACCTATTGATGCAGAGGCTGCTGATGCATTTGTTGTCTTCGTCAATATTTGTTCGTGTGTATGAGATAGGAGGGCTAGGTCATCTGCGAAGTCCAAATCGTCTAATTGATTCAAAGATGTCCATTGTATTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7478#0 TGGTTTGTCCTCTCCCATAAAACGCTGTTGCTGATAGTATCCGGCCAATGGATGTTGAGT 60 consensus_7478#2 ------------------------------------------------------------ consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 ATTTTGCGTAGACAACTGTATATAAATACTTGTAGCTTCTTGACGGTGGATGTAGTGGTT 120 consensus_7478#2 ------------------------------------------------------------ consensus_7478#1 --------------------------------CTATAGGTTAGTTGATAATAAATTCTTT 28 consensus_7478#0 CTCCACGTTTCAGCTCCATACAGTAGGACTGTCTTGACGTTTGTATTGAAGATACTCACT 180 consensus_7478#2 ------------------------------------------------------------ consensus_7478#1 TTTCAGACAAACCATTTAACTTGGATAATTCAGTATCTCTACAAAAAAAACATTAATTTT 88 consensus_7478#0 TTGAAGTTAGTCGACAGTTGTTATGAGTTTCATATGTTACTCAATTGTAGGAGTGCTGTC 240 consensus_7478#2 ------------------------------------------------------------ consensus_7478#1 TTTATGCAAACTTGCTACTTGTATTAGTAAGTTATTTAACTTCATAATAAGAATATTTAT 148 consensus_7478#0 CTTGCTTTGCCAATCCTCACCTTTACATCTGCAGCAGATCCTCATTCATCAGTGATGCTT 300 consensus_7478#2 ------------------------------------------------------------ consensus_7478#1 TTCATCTTAC---TCTATTCATATATATTTATGATACATTCTTCATTATTACTTACGCCT 205 consensus_7478#0 CCCAGGT---ACGTGAATGTTTCCACCTCTTCCAGAGTTTCTCCATCAAGTGTGA-CTGG 356 consensus_7478#2 ------------------------------------GTTTCTCCATCAAGTGTGA-TTGG 23 consensus_7478#1 ATCAACCCTCGTGGAGGAGCATAAGCCGCACACCGGTATTCTCCAACTAACCTAGTCCTG 265 ******* * * * * consensus_7478#0 GTTGGTGTCCTCCGTGTTGTATTTGGGAATCTTACTTTTTCCTTTGTGTATGTTGAGGTC 416 consensus_7478#2 GTTGGTGTTCTCCGTGTTGCATTTGAGAATCTTGCTTTTTCCTTTGTGTATGTTGAGACC 83 consensus_7478#1 GGAGATGCTTTCCA-GTTCTCTCCAGTTGTTATTCATCCTT-TTCATATCTGCTTCAATC 323 * * ** *** *** * * * * * * ** * * ** * * consensus_7478#0 TATTGATGCGGAGGCTGCTGTTACATTTGTTGTCTTCGTCTGTATTTGTTCGTGTGTATG 476 consensus_7478#2 TATTGATGCAGAGGCTGCTGATGCATTTGTTGTCTTCGTCAATATTTGTTCGTGTGTATG 143 consensus_7478#1 TCCTGGCGTAATGTGCTATTCGGCCTTCCACTTTTCCGCTTCCCTTCACCATTCCAAGTT 383 * ** * * * * ** * * ** ** * * consensus_7478#0 AGATAGGAGGGCTAAGTCATCTGTGAAGTCCAA--------ATCGTCTAATTGTTTCTGA 528 consensus_7478#2 AGATAGGAGGGCTAGGTCATCTGCGAAGTCCAA--------ATCGTCTAATTGATTCAAA 195 consensus_7478#1 AAAGATTGCCTCGTGGTTCTGTTTGGTGATTAACTTAGTGTATGACCTATCCACTTCCAA 443 * * * * ** * * * * ** ** *** *** * consensus_7478#0 GATGTCCATTGTATTCCGTGCTTC-CACTCAGTTGTCGAGGTCTTCATAATCCAGTCAAT 587 consensus_7478#2 GATGTCCATTGTATTTCA------------------------------------------ 213 consensus_7478#1 CGTCTTTTCTTAATTTCATCTTCAGCTGGAAGCTAGTTTGTCCTCTCCCATAAAACGTTG 503 * * * *** * consensus_7478#0 TACCAGAAGGAAGAGGAATGGGGAGAGTAGACAGCCTTGTCTGATTCCGGTCCTTCAGTT 647 consensus_7478#2 ------------------------------------------------------------ consensus_7478#1 TTGCTGATAGTATCCGACCAGTGAATGTTGAGTATTTTGCATA----------------- 546 consensus_7478#0 TCACGTTGGCAAACACCAGGTGGTGGTTGTGATCGGAAGCTAAGCCAACTCCTCTCCTGG 707 consensus_7478#2 ------------------------------------------------------------ consensus_7478#1 ------------------------------------------------------------ consensus_7478#0 TTCTCAC 714 consensus_7478#2 ------- consensus_7478#1 ------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||