cluster # 7479

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Schistosoma mansoni
cluster # 7479 cluster # 7479 Sequences # 5 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7479#0 length = 812 sequences # 3

consensus_7479#1 length = 470 sequences # 1
consensus_7479#2 length = 366 sequences # 1

consensusID : consensus_7479#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 812
fasta sequence

                              [AGAGTAATCCCAAAACGGGCGTGGTCGAAAAGTATGTATTGATTCTCGCTTATGTGTTACATGTTGTCGCGGGTTTTTAATGTCGTTTTTTATCGGCTTATCAAAATATTTTCCCGTCACATGTTAATTTTTGTAATATTAATGCGTGTTACATGGCGTTTATTGCAGTCTATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCGGCCTTATTTGGTAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAATTGGACTGAAACTATAGTTTCAAGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGAAGCAATTGAGAGTCAAACTATTCCTGAATCTTGTAATGGTTATAATAATCATTCCATGCGACGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAACACACTGGGAAAAGGATGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAGCTACTTTGTATTTT-AAAATATATCTGTTGTGCCAGTACACTGTGTTCTAACTTTAACGGCACTTACCGGTCCTGACTGTAGTGTTGTTGTTTCAGATCGCTCGTGCTTCCAAGTGAACGTCAATATACAACGTGCTACATTACGATATGAACCATTAATATACAGTCGTAAACAGTTCTATCCATGATAAGTATCACCGCTATCATCTGGACTGATATATTATTNGCGTA]

[+] EMBL CD083053             [AGAGTAATCCCAAAACGGGCGTGGTCGAAAAGTATGTATTGATTCTCGCTTATGTGTTACATGTTGTCGCGGGTTTTTAATGTCGTTTTTTATCGGCTTATCAAAATATTTTCCCGTCACATGTTAATTTTTGTAATATTAATGCGTGTTACATGGCGTTTATTGCAGTCTATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCGGCCTTATTTGGTAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAATTGGACTGAAACTATAGTTTCAAGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGAAGCAATTGAGAGTCAAACTATTCCTGAATCTTGTAATGGTTATAATAATCATTCCATGCGACGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAACACACTGGGAAAAGGATGAAGAAGCTCTACGCGATCTGAAC                                                                                                                                                                                                                                                           ]
[-] EMBL CD073089             [                                                                           TTTAATGTCGTTTTTTATCAGCTTATCAAAGTATTTTTCCGTCACTTGTTAATTTTTGCAATATTTATGCGTGTTACATGGCGTTTATTGCAGTCTATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCAGCCCTATTTGATAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAAGCAAAAACAAACTGTAAAATAACTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGAAGCAATTGAGAGTCAAGCTATTCATGAATCTTGTAATGGTTGTAATGATCATTCCATGCGGCGTTTTTAATGCGAGTTTGTTTTTTTATTGCAGGGCAACAAAGAGTAAATGCCCTGGGAAAA GATGAAGAAGCTTTACGCGATTTGAACGAGCAGAACAATGAATAAAGCTACTTTGTATTTT AAAATATATCTGT                                                                                                                                                                                                           ]
[+] EMBL CD077516             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               tGGAAAATGATGAAGAAGCCCTACGCGATCTGAACGAGCAGAACAATGAATAAAACTATTTTGTATTTTAAAAATATATCTGTTGTGCCAGTACACTGTGTTCTAACTTTAACGGCACTTACCGGTCCTGACTGTAGTGTTGTTGTTTCAGATCGCTCGTGCTTCCAAGTGAACGTCAATATACAACGTGCTACATTACGATATGAACCATTAATATACAGTCGTAAACAGTTCTATCCATGATAAGTATCACCGCTATCATCTGGACTGATATATTATTNGCGTA]




>consensus_7479#0
AGAGTAATCCCAAAACGGGCGTGGTCGAAAAGTATGTATTGATTCTCGCTTATGTGTTAC
ATGTTGTCGCGGGTTTTTAATGTCGTTTTTTATCGGCTTATCAAAATATTTTCCCGTCAC
ATGTTAATTTTTGTAATATTAATGCGTGTTACATGGCGTTTATTGCAGTCTATTGGTTGC
CTGACGTATTTGGAGCTGACAACCTGAATGAATGTTTAGTCGGCCTTATTTGGTAATTTG
TAACAATGCAAACTCAGGTAAGTGAAATTCATCATTTATCGAGTCAAAAATTGGACTGAA
ACTATAGTTTCAAGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCCCTAT
TATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTTATAAACTGTAATTGAAGCAATTGA
GAGTCAAACTATTCCTGAATCTTGTAATGGTTATAATAATCATTCCATGCGACGTTTCTA
ATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGAGTAAACACACTGGGAAAAGGATGA
AGAAGCTCTACGCGATCTGAACGAGCAGAACAATGAATAAAGCTACTTTGTATTTTAAAA
TATATCTGTTGTGCCAGTACACTGTGTTCTAACTTTAACGGCACTTACCGGTCCTGACTG
TAGTGTTGTTGTTTCAGATCGCTCGTGCTTCCAAGTGAACGTCAATATACAACGTGCTAC
ATTACGATATGAACCATTAATATACAGTCGTAAACAGTTCTATCCATGATAAGTATCACC
GCTATCATCTGGACTGATATATTATTNGCGTA

consensusID : consensus_7479#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 470
fasta sequence

                              [CTCGAGGCAGAATCGGCACGAGGTGCGTAACCAAGGGTGGGCATGGTCGAAAAGTCATGTCATTGATTCTCGCTCATACGTTACATGTTGTCGCGGATTTTTAATGTCGTTTTTTATCGGCTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGGCATTTATTTCAGTCTATTGGTTGCCCGACGTATTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATAGGTGTTGGTAGTTGTTTATAAATTGTAATTGAAGCAATTAAGTGTCAAACTATTCATGAACCTTGTA]

[+] EMBL CD083889             [CTCGAGGCAGAATCGGCACGAGGTGCGTAACCAAGGGTGGGCATGGTCGAAAAGTCATGTCATTGATTCTCGCTCATACGTTACATGTTGTCGCGGATTTTTAATGTCGTTTTTTATCGGCTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGGCATTTATTTCAGTCTATTGGTTGCCCGACGTATTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATAGGTGTTGGTAGTTGTTTATAAATTGTAATTGAAGCAATTAAGTGTCAAACTATTCATGAACCTTGTA]




>consensus_7479#1
CTCGAGGCAGAATCGGCACGAGGTGCGTAACCAAGGGTGGGCATGGTCGAAAAGTCATGT
CATTGATTCTCGCTCATACGTTACATGTTGTCGCGGATTTTTAATGTCGTTTTTTATCGG
CTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGG
CATTTATTTCAGTCTATTGGTTGCCCGACGTATTTTGAGCTGACAACCTGAATGAATGTT
TAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATT
TATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAAT
TTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATAGGTGTTGGTAGTTGTTT
ATAAATTGTAATTGAAGCAATTAAGTGTCAAACTATTCATGAACCTTGTA

consensusID : consensus_7479#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TCGCGGAGGTTGTCTATAGCATAAGGGCATGGTCGAAAAGTCATGTCATTGATTCTCGCTCATACGTCACATGTTGTCGCGGATTTTTGATGTCGTTTTTTATCGGCTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGGCATTTATTTCAGTCTATTGGTTGCCTGACGTATTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCC]

[-] EMBL CD187603             [TCGCGGAGGTTGTCTATAGCATAAGGGCATGGTCGAAAAGTCATGTCATTGATTCTCGCTCATACGTCACATGTTGTCGCGGATTTTTGATGTCGTTTTTTATCGGCTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGGCATTTATTTCAGTCTATTGGTTGCCTGACGTATTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCGCCTCCC]




>consensus_7479#2
TCGCGGAGGTTGTCTATAGCATAAGGGCATGGTCGAAAAGTCATGTCATTGATTCTCGCT
CATACGTCACATGTTGTCGCGGATTTTTGATGTCGTTTTTTATCGGCTAATCACAGCATT
TTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGGCATTTATTTCAGTC
TATTGGTTGCCTGACGTATTTTGAGCTGACAACCTGAATGAATGTTTAGTCAGCCTTATT
TGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATTTATCGAGTCAAAAA
TTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAATTTACATATGACTCG
CCTCCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7479#1      CTCGAGGCAGAATCGGCACGAGGTGCGTAACCAAGGGTGGGCATGGTCGAAAAGTCATGT 60
consensus_7479#2      -------------TCGCGGAGGTTGTCTATAGCATAA-GGGCATGGTCGAAAAGTCATGT 46
consensus_7479#0      -------------------AGAGTA---ATCCCAAAACGGGCGTGGTCGAAAAGT-ATGT 37
                                             *    *    *    **** ************ ****

consensus_7479#1      CATTGATTCTCGCTCATACGTTACATGTTGTCGCGGATTTTTAATGTCGTTTTTTATCGG 120
consensus_7479#2      CATTGATTCTCGCTCATACGTCACATGTTGTCGCGGATTTTTGATGTCGTTTTTTATCGG 106
consensus_7479#0      -ATTGATTCTCGCTTATGTGTTACATGTTGTCGCGGGTTTTTAATGTCGTTTTTTATCGG 96
                       ************* **  ** ************** ***** *****************

consensus_7479#1      CTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGG 180
consensus_7479#2      CTAATCACAGCATTTTTCCGTCACATGTTAATTTTTGTAATATTTATGCGTGTTACATGG 166
consensus_7479#0      CTTATCAAAATATTTTCCCGTCACATGTTAATTTTTGTAATATTAATGCGTGTTACATGG 156
                      ** **** *  ***** *************************** ***************

consensus_7479#1      CATTTATTTCAGTCTATTGGTTGCCCGACGTATTTTGAGCTGACAACCTGAATGAATGTT 240
consensus_7479#2      CATTTATTTCAGTCTATTGGTTGCCTGACGTATTTTGAGCTGACAACCTGAATGAATGTT 226
consensus_7479#0      CGTTTATTGCAGTCTATTGGTTGCCTGACGTATTTGGAGCTGACAACCTGAATGAATGTT 216
                      * ****** **************** ********* ************************

consensus_7479#1      TAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATT 300
consensus_7479#2      TAGTCAGCCTTATTTGGTAATTTGTAACAATACAAACTCAGGTGAGTGAAATTCGTCATT 286
consensus_7479#0      TAGTCGGCCTTATTTGGTAATTTGTAACAATGCAAACTCAGGTAAGTGAAATTCATCATT 276
                      ***** ************************* *********** ********** *****

consensus_7479#1      TATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAAT 360
consensus_7479#2      TATCGAGTCAAAAATTGGACCGAAACTATAGTTTCAGGCAAAAACAAGCTGTAAAATAAT 346
consensus_7479#0      TATCGAGTCAAAAATTGGACTGAAACTATAGTTTCAAGCAAAAACAAGCTGTAAAATAAT 336
                      ******************** *************** ***********************

consensus_7479#1      TTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATAGGTGTTGGTAGTTGTTT 420
consensus_7479#2      TTACATATGACTCGCCTCCC---------------------------------------- 366
consensus_7479#0      TTACATATGACTCGCCTCCCCTATTATGGTAGTGATGAACATGGGTGTTGGTAGTTGTTT 396
                      ********************                                        

consensus_7479#1      ATAAATTGTAATTGAAGCAATTAAGTGTCAAACTATTCATGAACCTTGTA---------- 470
consensus_7479#2      ------------------------------------------------------------
consensus_7479#0      ATAAACTGTAATTGAAGCAATTGAGAGTCAAACTATTCCTGAATCTTGTAATGGTTATAA 456
                                                                                  

consensus_7479#1      ------------------------------------------------------------
consensus_7479#2      ------------------------------------------------------------
consensus_7479#0      TAATCATTCCATGCGACGTTTCTAATGCGAGTTTGTTTTTCTATTGCAGGGCAACAAAGA 516
                                                                                  

consensus_7479#1      ------------------------------------------------------------
consensus_7479#2      ------------------------------------------------------------
consensus_7479#0      GTAAACACACTGGGAAAAGGATGAAGAAGCTCTACGCGATCTGAACGAGCAGAACAATGA 576
                                                                                  

consensus_7479#1      ------------------------------------------------------------
consensus_7479#2      ------------------------------------------------------------
consensus_7479#0      ATAAAGCTACTTTGTATTTTAAAATATATCTGTTGTGCCAGTACACTGTGTTCTAACTTT 636
                                                                                  

consensus_7479#1      ------------------------------------------------------------
consensus_7479#2      ------------------------------------------------------------
consensus_7479#0      AACGGCACTTACCGGTCCTGACTGTAGTGTTGTTGTTTCAGATCGCTCGTGCTTCCAAGT 696
                                                                                  

consensus_7479#1      ------------------------------------------------------------
consensus_7479#2      ------------------------------------------------------------
consensus_7479#0      GAACGTCAATATACAACGTGCTACATTACGATATGAACCATTAATATACAGTCGTAAACA 756
                                                                                  

consensus_7479#1      --------------------------------------------------------
consensus_7479#2      --------------------------------------------------------
consensus_7479#0      GTTCTATCCATGATAAGTATCACCGCTATCATCTGGACTGATATATTATTNGCGTA 812