These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7481#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 473 fasta sequence [CTTGATNCAC-AATGCAAGTCAGTCTTTAAAAGTGCNTGC-ACTGGTGAC-TTTTACCAGAAGGTGGGCTGATATTTTCTGCAGTGAACGACGA-TTTTTTTTCAATATTAGATTTTTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATA-TTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAACTTTATACGCAAACTCATGACTCTGCCAAAAGTGTGTCAAGCAGCTTGAAGGATGTTGACCCTTGAAGGTCAAAATGCCGTAAGACGACAGTCTATAAGTTCATTCAGAACCGATCAAATAAAGACAATGGTAAATTTGATTTGAATTT] [-] EMBL CD183090 [CTTGATNCTC AATGCAAGTCAGTCTTTAAAAGTGCTTGC ACTGGTGACTTTTTACCAGAAGGTGGGCTGATATTTTCTGCAGTGAACGACGA TTTTTTTTCAATATTAGATTTTTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATA TTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAAC ] [-] EMBL CD182941 [CTTGANCCAC AATGCAAGTCAGTCTTTAAAAGTGCNTGC ACTGGTGAC TTTTACCAGAAGGTGGGCTGATATTTTCTGCAGTGAACGACGA TTTTTTTTCAATATTAGATTTNTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATA TTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAAC ] [-] EMBL CD182931 [ TTGAT CACNNATGCAAGTCAGTCNTT AAAGTGC TGCNACTGGTGAC TTTTACCAGAAGGTGGGCTGATATNTTCTGCAGTGAACGACGATTTTTTTTTCAATATTAGATTTNTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTCGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATATTCTATAAC ] [+] EMBL CD200698 [ TCTGCAGTGAACGACGA TTTTTTTTCAATATTAGATTTTTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATA TTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAACTTTATACGCAAACTCATGACTCTGCCAAAAGTGTGTCAAGCAGCTTGAAGGATGTTGACCCTTGAAGGTCAAAATGCCGTAAGACGACAGTCTATAAGTTCATTCAGAACCGATCAAATAAAGACAATGGTAAATTTGATTTGAATTT] consensusID : consensus_7481#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 197 fasta sequence [AAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTTTCTTTGAACTGAGCTATGTATATAGCGCAATGATGAGAGAAATAGACTTACGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAAC] [-] EMBL CD183031 [AAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTTTCTTTGAACTGAGCTATGTATATAGCGCAATGATGAGAGAAATAGACTTACGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7481#0 CTTGATNCACAATGCAAGTCAGTCTTTAAAAGTGCNTGCACTGGTGACTTTTACCAGAAG 60 consensus_7481#1 ------------------------------------------------------------ consensus_7481#0 GTGGGCTGATATTTTCTGCAGTGAACGACGATTTTTTTTCAATATTAGATTTTTGTTGCT 120 consensus_7481#1 ------------------------------------------------------------ consensus_7481#0 CAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGC 180 consensus_7481#1 ----------------------------------------------AAGTGTAGAAGGGC 14 ************** consensus_7481#0 GTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTT 240 consensus_7481#1 GTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTT 74 ************************************************************ consensus_7481#0 TCTTTGAACTGAG--------------------------------------GTGTCCAAT 262 consensus_7481#1 TCTTTGAACTGAGCTATGTATATAGCGCAATGATGAGAGAAATAGACTTACGTGTCCAAT 134 ************* ********* consensus_7481#0 AATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTAT 322 consensus_7481#1 AATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTAT 194 ************************************************************ consensus_7481#0 AACTTTATACGCAAACTCATGACTCTGCCAAAAGTGTGTCAAGCAGCTTGAAGGATGTTG 382 consensus_7481#1 AAC--------------------------------------------------------- 197 *** consensus_7481#0 ACCCTTGAAGGTCAAAATGCCGTAAGACGACAGTCTATAAGTTCATTCAGAACCGATCAA 442 consensus_7481#1 ------------------------------------------------------------ consensus_7481#0 ATAAAGACAATGGTAAATTTGATTTGAATTT 473 consensus_7481#1 ------------------------------- |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||