cluster # 7481

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Schistosoma mansoni
cluster # 7481 cluster # 7481 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7481#0 length = 473 sequences # 4

consensus_7481#1 length = 197 sequences # 1

consensusID : consensus_7481#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 473
fasta sequence

                              [CTTGATNCAC-AATGCAAGTCAGTCTTTAAAAGTGCNTGC-ACTGGTGAC-TTTTACCAGAAGGTGGGCTGATATTTTCTGCAGTGAACGACGA-TTTTTTTTCAATATTAGATTTTTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATA-TTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAACTTTATACGCAAACTCATGACTCTGCCAAAAGTGTGTCAAGCAGCTTGAAGGATGTTGACCCTTGAAGGTCAAAATGCCGTAAGACGACAGTCTATAAGTTCATTCAGAACCGATCAAATAAAGACAATGGTAAATTTGATTTGAATTT]

[-] EMBL CD183090             [CTTGATNCTC AATGCAAGTCAGTCTTTAAAAGTGCTTGC ACTGGTGACTTTTTACCAGAAGGTGGGCTGATATTTTCTGCAGTGAACGACGA TTTTTTTTCAATATTAGATTTTTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATA TTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAAC                                                                                                                                                    ]
[-] EMBL CD182941             [CTTGANCCAC AATGCAAGTCAGTCTTTAAAAGTGCNTGC ACTGGTGAC TTTTACCAGAAGGTGGGCTGATATTTTCTGCAGTGAACGACGA TTTTTTTTCAATATTAGATTTNTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATA TTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAAC                                                                                                                                                    ]
[-] EMBL CD182931             [ TTGAT CACNNATGCAAGTCAGTCNTT AAAGTGC TGCNACTGGTGAC TTTTACCAGAAGGTGGGCTGATATNTTCTGCAGTGAACGACGATTTTTTTTTCAATATTAGATTTNTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTCGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATATTCTATAAC                                                                                                                                                    ]
[+] EMBL CD200698             [                                                                             TCTGCAGTGAACGACGA TTTTTTTTCAATATTAGATTTTTGTTGCTCAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATA TTTTTTCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAACTTTATACGCAAACTCATGACTCTGCCAAAAGTGTGTCAAGCAGCTTGAAGGATGTTGACCCTTGAAGGTCAAAATGCCGTAAGACGACAGTCTATAAGTTCATTCAGAACCGATCAAATAAAGACAATGGTAAATTTGATTTGAATTT]




>consensus_7481#0
CTTGATNCACAATGCAAGTCAGTCTTTAAAAGTGCNTGCACTGGTGACTTTTACCAGAAG
GTGGGCTGATATTTTCTGCAGTGAACGACGATTTTTTTTCAATATTAGATTTTTGTTGCT
CAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGC
GTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTT
TCTTTGAACTGAGGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGA
AAAAATCCATTTGATCTTCTATAACTTTATACGCAAACTCATGACTCTGCCAAAAGTGTG
TCAAGCAGCTTGAAGGATGTTGACCCTTGAAGGTCAAAATGCCGTAAGACGACAGTCTAT
AAGTTCATTCAGAACCGATCAAATAAAGACAATGGTAAATTTGATTTGAATTT

consensusID : consensus_7481#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 197
fasta sequence

                              [AAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTTTCTTTGAACTGAGCTATGTATATAGCGCAATGATGAGAGAAATAGACTTACGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAAC]

[-] EMBL CD183031             [AAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTTTCTTTGAACTGAGCTATGTATATAGCGCAATGATGAGAGAAATAGACTTACGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTATAAC]




>consensus_7481#1
AAGTGTAGAAGGGCGTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGG
ACGTGAATATTTTTTCTTTGAACTGAGCTATGTATATAGCGCAATGATGAGAGAAATAGA
CTTACGTGTCCAATAATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCC
ATTTGATCTTCTATAAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7481#0      CTTGATNCACAATGCAAGTCAGTCTTTAAAAGTGCNTGCACTGGTGACTTTTACCAGAAG 60
consensus_7481#1      ------------------------------------------------------------
                                                                                  

consensus_7481#0      GTGGGCTGATATTTTCTGCAGTGAACGACGATTTTTTTTCAATATTAGATTTTTGTTGCT 120
consensus_7481#1      ------------------------------------------------------------
                                                                                  

consensus_7481#0      CAAAATGAAGATTATGTGATTCCTCAACAGTGAATTCGTCAAACTGAAGTGTAGAAGGGC 180
consensus_7481#1      ----------------------------------------------AAGTGTAGAAGGGC 14
                                                                    **************

consensus_7481#0      GTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTT 240
consensus_7481#1      GTATTTCACGAGAACTTGTGATTAGATGGTTGCCAGTGAACAGAGGACGTGAATATTTTT 74
                      ************************************************************

consensus_7481#0      TCTTTGAACTGAG--------------------------------------GTGTCCAAT 262
consensus_7481#1      TCTTTGAACTGAGCTATGTATATAGCGCAATGATGAGAGAAATAGACTTACGTGTCCAAT 134
                      *************                                      *********

consensus_7481#0      AATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTAT 322
consensus_7481#1      AATACTCAAGATATCATTTTTGACAGGTGTTCGGTTGAAAAAATCCATTTGATCTTCTAT 194
                      ************************************************************

consensus_7481#0      AACTTTATACGCAAACTCATGACTCTGCCAAAAGTGTGTCAAGCAGCTTGAAGGATGTTG 382
consensus_7481#1      AAC--------------------------------------------------------- 197
                      ***                                                         

consensus_7481#0      ACCCTTGAAGGTCAAAATGCCGTAAGACGACAGTCTATAAGTTCATTCAGAACCGATCAA 442
consensus_7481#1      ------------------------------------------------------------
                                                                                  

consensus_7481#0      ATAAAGACAATGGTAAATTTGATTTGAATTT 473
consensus_7481#1      -------------------------------