These datas are free for academic use only, please contact me for any other use. Schistosoma mansoni see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7486#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 580 fasta sequence [CTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGCCTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGATTACCGACGAAGAACAGGAAAAGAGGAAGGGGT] [+] EMBL CD151846 [CTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGG ] [+] EMBL CD064766 [ GAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGCCTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGATTACCGACGAAGAACAGGAAAAGAGGAAGGGGT] consensusID : consensus_7486#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 562 fasta sequence [CTTCACAGTCAACAAACGCCGAACATTCCATAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACA-AGACGCCAA---CCTGGCGTCCACATCGTCTGCCATATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTCGCGTTCACTCACAATTTCGTTTACGCGCGACTCCCAGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGCCGGCACATTTCATCCCGTAATGCAGAACACTCGTCACGAGAAGCAGACAATCGACCCTCCAGATCTGACACTACGCAAACCTTCTCGTGTCTATAGGCTTCCAGTTCCTGTCGAGCAGTTGACGCCTGTTCGACTGCCTCACGAAGAGCTGTTTGCATCGACACCATCTCAGACACCTGCTTATCACACAGATGCTCCACATCCTATTTAGGAAGATTTGGGAGGAAGAACAAGCTCTACAGACAGACTGAAAATAAGAATATCTCATCAAGACACCAAAGAAAGGAGACACGAGCAAATGTG] [+] EMBL CD063982 [CTTCACAGTCAACAAACGCCGAACATTCCATAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACA AGACGCCAA CCTGGCGTCCACATCGTCTGCCATATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTCGCGTTCACTCACAATTTCGTTTACGCGCGACTCCCAGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGCCGGCACATTT ] [-] EMBL CD092423 [ TATATGGTCA ACCACAAACACCAACAGCCTGGCGTCCACATCGTCTGCCATATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTGGCGTTCACTCACAATTTCGTTTACGCGCGACTCCCGGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGCCGGCACATTTCATCCCGTAATGCAGAACACTCGTCACGAGA ] [-] EMBL CD144235 [ GCCATATCCAATCTACCACGCAGTTCCGACAACTCTNTCATGGCTGTGTCGCGTTCACTCACAATTTCGTTTACGCGCGACTCCCAGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGCCGGCACATTTCATCCCGTAGTGCAGAACACTCGTCACGAGAAGCAGACAATCGACCCTCCAGATCTGACACTACGCAAACCTTCTCGTGTCTATAGGCTTCCAGTTCCTGTCGAGCAGTTGACGCCTGTTCGACTGCCTCACGAAGAGCTGTTTGCATCGACACCATCTCAGACACCTGCTTATCACACAGATGCTCCACATCCTATTTAGGAAGATTTGGGAGGAAGAACAAGCTCTACAGACAGACTGAAAATAAGAATATCTCATCAAGACACCAAAGAAAGGAGACACGAGCAAATGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7486#0 CTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACT 60 consensus_7486#1 ----CTTCACAGTCAACAAACGCCGAACATTCCATAACGAA-GCATCACTCTCCTCAACC 55 ** * * * * ** *** * * * * * * * * ** consensus_7486#0 GTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTG 120 consensus_7486#1 GATTTAGACAGC----TTCACTATCTGTTCATAACAAGACGCCAACCTGGCGTCCAC--- 108 * ** ** ** ***** * * * ** * * * * consensus_7486#0 AATGAGTTGAGGGAGACTGTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAA 180 consensus_7486#1 -ATCGTCTGCCATATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTCGC 167 ** ** * * * * * * * * * ** * * ** * * * consensus_7486#0 GCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGA 240 consensus_7486#1 GTTCACT-CACAATTTCGTTTAC--GCGCGACTC-CCAGTCTCGATTGGCTATCGCCA-A 222 * * * ** *** * * **** *** * ** * * ** ** * consensus_7486#0 CAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGAC 300 consensus_7486#1 CACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGC-CGGCACATTTCATCCCGT--AA 279 ** **** ** * * ** **** * * * * * **** * consensus_7486#0 CGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAA--GCTAGTGAGTTCA 358 consensus_7486#1 TGCAGAACACTCG-TCACGAGAAGCAGACAATCGACCCTCCAGATCTGACACTACGCAAA 338 * *** ** *** ** *** * *** *** * * * * * consensus_7486#0 AGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGT 418 consensus_7486#1 CCTTCTCGTGTCTATAGGCT---TCCAGTTC-----CTGT-CGAGCAGTTGACGCCTGTT 389 ** *** *** * * *** *** ** ***** ** ** * consensus_7486#0 TATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGG---AGAGTGATGCTTCGTTGATG 475 consensus_7486#1 CGACTGCCTCACGAAGAGCTGTTTGCATCGACACCATCTCAGACACCTGCTTATCACACA 449 * * ****** * **** * *** ***** * consensus_7486#0 GATGTTCGGCGTT-TGTT-------GCCTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAG 527 consensus_7486#1 GATGCTCCACATCCTATTTAGGAAGATTTGGGAGGAAGAACAAGCTCTACAGACAGACTG 509 **** ** * * * ** ** ** * *** * * * ** * consensus_7486#0 AAGAGAAGTGTCATTTGCGATTACCGACGAAGAACAGGAAAAGAGGAAGGGGT- 580 consensus_7486#1 AAAATAAGAATATCTCATCAAGAC-ACCAAAGAAAGGAGACACGAGCAAATGTG 562 ** * *** * * * ** * ***** * * * * * ** |
Copyright Thu Nov 6 12:32:27 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||