cluster # 7486

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Schistosoma mansoni
cluster # 7486 cluster # 7486 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7486#0 length = 580 sequences # 2

consensus_7486#1 length = 562 sequences # 3

consensusID : consensus_7486#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 580
fasta sequence

                              [CTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGCCTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGATTACCGACGAAGAACAGGAAAAGAGGAAGGGGT]

[+] EMBL CD151846             [CTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTGAATGAGTTGAGGGAGACTGTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAAGCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGACAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGACCGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGG                                                                                                ]
[+] EMBL CD064766             [                                                                                                                                                                                                                                                                                                                                                  GAGAGAAGCTAGTGAGTTCAAGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGCCTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGATTACCGACGAAGAACAGGAAAAGAGGAAGGGGT]




>consensus_7486#0
CTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACT
GTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTG
AATGAGTTGAGGGAGACTGTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAA
GCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGA
CAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGAC
CGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAAGCTAGTGAGTTCAAG
TTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGTTA
TGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGT
TCGGCGTTTGTTGCCTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCA
TTTGCGATTACCGACGAAGAACAGGAAAAGAGGAAGGGGT

consensusID : consensus_7486#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 562
fasta sequence

                              [CTTCACAGTCAACAAACGCCGAACATTCCATAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACA-AGACGCCAA---CCTGGCGTCCACATCGTCTGCCATATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTCGCGTTCACTCACAATTTCGTTTACGCGCGACTCCCAGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGCCGGCACATTTCATCCCGTAATGCAGAACACTCGTCACGAGAAGCAGACAATCGACCCTCCAGATCTGACACTACGCAAACCTTCTCGTGTCTATAGGCTTCCAGTTCCTGTCGAGCAGTTGACGCCTGTTCGACTGCCTCACGAAGAGCTGTTTGCATCGACACCATCTCAGACACCTGCTTATCACACAGATGCTCCACATCCTATTTAGGAAGATTTGGGAGGAAGAACAAGCTCTACAGACAGACTGAAAATAAGAATATCTCATCAAGACACCAAAGAAAGGAGACACGAGCAAATGTG]

[+] EMBL CD063982             [CTTCACAGTCAACAAACGCCGAACATTCCATAACGAAGCATCACTCTCCTCAACCGATTTAGACAGCTTCACTATCTGTTCATAACA AGACGCCAA   CCTGGCGTCCACATCGTCTGCCATATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTCGCGTTCACTCACAATTTCGTTTACGCGCGACTCCCAGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGCCGGCACATTT                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CD092423             [                                                                        TATATGGTCA ACCACAAACACCAACAGCCTGGCGTCCACATCGTCTGCCATATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTGGCGTTCACTCACAATTTCGTTTACGCGCGACTCCCGGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGCCGGCACATTTCATCCCGTAATGCAGAACACTCGTCACGAGA                                                                                                                                                                                                                                                                      ]
[-] EMBL CD144235             [                                                                                                                       GCCATATCCAATCTACCACGCAGTTCCGACAACTCTNTCATGGCTGTGTCGCGTTCACTCACAATTTCGTTTACGCGCGACTCCCAGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGCCGGCACATTTCATCCCGTAGTGCAGAACACTCGTCACGAGAAGCAGACAATCGACCCTCCAGATCTGACACTACGCAAACCTTCTCGTGTCTATAGGCTTCCAGTTCCTGTCGAGCAGTTGACGCCTGTTCGACTGCCTCACGAAGAGCTGTTTGCATCGACACCATCTCAGACACCTGCTTATCACACAGATGCTCCACATCCTATTTAGGAAGATTTGGGAGGAAGAACAAGCTCTACAGACAGACTGAAAATAAGAATATCTCATCAAGACACCAAAGAAAGGAGACACGAGCAAATGTG]




>consensus_7486#1
CTTCACAGTCAACAAACGCCGAACATTCCATAACGAAGCATCACTCTCCTCAACCGATTT
AGACAGCTTCACTATCTGTTCATAACAAGACGCCAACCTGGCGTCCACATCGTCTGCCAT
ATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTCGCGTTCACTCACAAT
TTCGTTTACGCGCGACTCCCAGTCTCGATTGGCTATCGCCAACACTGTGTTGCAACGCTC
TTCCATCGATTTCTCAAGCCGGCACATTTCATCCCGTAATGCAGAACACTCGTCACGAGA
AGCAGACAATCGACCCTCCAGATCTGACACTACGCAAACCTTCTCGTGTCTATAGGCTTC
CAGTTCCTGTCGAGCAGTTGACGCCTGTTCGACTGCCTCACGAAGAGCTGTTTGCATCGA
CACCATCTCAGACACCTGCTTATCACACAGATGCTCCACATCCTATTTAGGAAGATTTGG
GAGGAAGAACAAGCTCTACAGACAGACTGAAAATAAGAATATCTCATCAAGACACCAAAG
AAAGGAGACACGAGCAAATGTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7486#0      CTGTCTAAATCGGTAGAGGAGAGTGATGCTTCGTTGATGGATGTTCGGCGTTTGTTGACT 60
consensus_7486#1      ----CTTCACAGTCAACAAACGCCGAACATTCCATAACGAA-GCATCACTCTCCTCAACC 55
                          **  *  *  *    *    **   ***  * * * * *     *  *  *  ** 

consensus_7486#0      GTGAAGGAGAGTGAAGTTGCGGATCTGAGAGAAGAGAAGTGTCATTTGCGAGACGAAGTG 120
consensus_7486#1      GATTTAGACAGC----TTCACTATCTGTTCATAACAAGACGCCAACCTGGCGTCCAC--- 108
                      *     ** **     **    *****     *   *   * **     * * * *    

consensus_7486#0      AATGAGTTGAGGGAGACTGTGGAGCGACTACTCCTCAGAATGCATACACGACGAGCACAA 180
consensus_7486#1      -ATCGTCTGCCATATCCAATCTACCACGCAGTTCCGACAACTCTTTCATGGCTGTGTCGC 167
                       **    **    *  *  *  * *    * * *  * **  * * ** * *     *  

consensus_7486#0      GCCTAGTGTGTCGGTTGGTTCTCCGACCAGACTTGTGAGTGTGGAGACTCAAGCGACAGA 240
consensus_7486#1      GTTCACT-CACAATTTCGTTTAC--GCGCGACTC-CCAGTCTCGATTGGCTATCGCCA-A 222
                      *   * *       ** ***  *   *  ****    *** * **    * * ** ** *

consensus_7486#0      CAGCGTGTCTTGGTTGGCTACTGACACATTGTCAACTTCAGGATTTACCTATCCGTCGAC 300
consensus_7486#1      CACTGTGTTGCAACGCTCTTCCATCGATTTCTCAAGC-CGGCACATTTCATCCCGT--AA 279
                      **  ****         ** *   *   ** ****   * * *  *  *   ****  * 

consensus_7486#0      CGTAGACCAGTCGACCATGAGTGCAGTGGAGATGACGAGAGAGAA--GCTAGTGAGTTCA 358
consensus_7486#1      TGCAGAACACTCG-TCACGAGAAGCAGACAATCGACCCTCCAGATCTGACACTACGCAAA 338
                       * *** ** ***  ** ***        *   ***     ***   *  * *  *   *

consensus_7486#0      AGTTTGTGTGAAGATAAGTCGAATGTGGTTGGTCAACTGCGTGAAGAGTTGGCGTCTTGT 418
consensus_7486#1      CCTTCTCGTGTCTATAGGCT---TCCAGTTC-----CTGT-CGAGCAGTTGACGCCTGTT 389
                        **   ***   *** *     *   ***      ***   **  ***** ** **  *

consensus_7486#0      TATGAACAGATAGTGAAGCTGTCTAAATCGGTAGAGG---AGAGTGATGCTTCGTTGATG 475
consensus_7486#1      CGACTGCCTCACGAAGAGCTGTTTGCATCGACACCATCTCAGACACCTGCTTATCACACA 449
                            *     *   ****** *  ****  *       ***    *****     *  

consensus_7486#0      GATGTTCGGCGTT-TGTT-------GCCTGTGAAGGAGAGTGAAGTTGCGGATCTGAGAG 527
consensus_7486#1      GATGCTCCACATCCTATTTAGGAAGATTTGGGAGGAAGAACAAGCTCTACAGACAGACTG 509
                      **** **  * *  * **          ** ** * ***   *  *       * **  *

consensus_7486#0      AAGAGAAGTGTCATTTGCGATTACCGACGAAGAACAGGAAAAGAGGAAGGGGT- 580
consensus_7486#1      AAAATAAGAATATCTCATCAAGAC-ACCAAAGAAAGGAGACACGAGCAAATGTG 562
                      ** * ***  *   *    *  **   * *****  *  * *   * *   **