cluster # 7488

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Schistosoma mansoni
cluster # 7488 cluster # 7488 Sequences # 5 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_7488#0 length = 658 sequences # 4

consensus_7488#1 length = 213 sequences # 1

consensusID : consensus_7488#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 658
fasta sequence

                              [CAATAGATAACTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCT-GACC--T-TT-TCCAATGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGATGGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCAAATAGACAATTAGCCAATTGACTTACACCTTCCATACATGCACCCAATGAAAAATAATCTGTCAAATGATGACTACATAATGCTTGGCGTTTAACACCAACTGCATAGGGTAAATCACTAGGCCAAATTA]

[+] EMBL CD132973             [CAATAGATAACTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCT GACC  TGTTCTCCAATGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGATGGTAATTCAGCTAGATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTG                                                                                                                                                                                                                                                                                         ]
[-] EMBL CD133019             [        AATTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCT GACCTGT TT TCCAATGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGATGGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTAAGCAGTGGTGGTATAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTGTTGGCAATCTTGG                                                                                                                                                                                                                                                                                        ]
[+] EMBL CD062492             [                                          ggTTCTGGAGC  T TT TCCAATGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGATGGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGTGCAAGCATAGAATGTAATGCATATCCCCATTCATGAAATAAATTTTCAACTTGTCCTATACTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATAATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACA                                                                                                                                                                                                         ]
[-] EMBL CD148775             [                                                                                                                                                                                                                                                                                                                                                                     CACGTATAGTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATTCCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCAAATAGACAATTAGCCAATTGACTTACACCTTCCATACATGCACCCAATGAAAAATAATCTGTCAAATGATGACTACATAATGCTTGGCGTTTAACACCAACTGCATAGGGTAAATCACTAGGCCAAATTA]




>consensus_7488#0
CAATAGATAACTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTTTTCCAA
TGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGAT
GGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGT
GCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATA
CTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATA
ATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATA
GTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATT
CCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTTTGATAACAGATGGA
TGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCAAATAGACAATTA
GCCAATTGACTTACACCTTCCATACATGCACCCAATGAAAAATAATCTGTCAAATGATGA
CTACATAATGCTTGGCGTTTAACACCAACTGCATAGGGTAAATCACTAGGCCAAATTA

consensusID : consensus_7488#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 213
fasta sequence

                              [TTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCAAAAAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTATGACACTT]

[+] EMBL AI395122             [TTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCAAAAAAGCAATGATAAAAACAGATCTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTATGACACTT]




>consensus_7488#1
TTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCAAAAAAGCAATGATAAAAACAGAT
CTATGATAAACAATGTAAATAAATACATTTCTTTTAGAATAAAAGATCATTTTGGTAAAT
TTTATGGATCAAAAATTGATCTGAAAAATAAAAAAGAAACCATAGTGAATGTTAAAGCAA
AAAGCGATAAGAAAAAATTAGTGTATGACACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_7488#0      CAATAGATAACTGTTGTAATGCGATTATTTCATTAGGATCTGGTTTCTGACCTTTTCCAA 60
consensus_7488#1      ------------------------------------------------------------
                                                                                  

consensus_7488#0      TGTCGAGCATATTCTGACACTACACGTGGATCTAACGCAAAGTGTTCAAATAAAGTTGAT 120
consensus_7488#1      ------------------------------------------------------------
                                                                                  

consensus_7488#0      GGTAATTCAGCTAAATCAGTACTACACCGTGTCCCAGTAACATGTTGATATCGTGTACGT 180
consensus_7488#1      ------------------------------------------------------------
                                                                                  

consensus_7488#0      GCAAGCATAGAATGTAATGCATGTCCCCATTCATGAAATAAATTTTCAACTTGTCCTATA 240
consensus_7488#1      ------------------------------------------------------------
                                                                                  

consensus_7488#0      CTAAGCAGTGGTGGTTTAGAATTCGATTCAGGCGGAGATACCGTCAATTGAAGTGTTATA 300
consensus_7488#1      ------------------------------------------------------------
                                                                                  

consensus_7488#0      ATTGGAGATTGATATGATCGTTTACTAGAACCATTATCTAGGCATCGGCCACCACGTATA 360
consensus_7488#1      ------------------------------------------------------------
                                                                                  

consensus_7488#0      GTGTAATGGCAATCTTGGGCAGGTTTACCAGGACGATCAAGCAGATCACAATAGACTATT 420
consensus_7488#1      ------------------------------------------------------------
                                                                                  

consensus_7488#0      CCAATTGGTTCTGTCGAATTATTCTTATTCGAATACACATGAACTT-TGATAACAGATGG 479
consensus_7488#1      ------------------TTTTTTTTTTTTCATTACAAATTTGTTAATGATAGCAAA--A 40
                                        ** ** ** **  * **** **    *  ***** ** *   

consensus_7488#0      ATGCCATACTTCTCCAGGTTGTACTGGTACAACATCTAGACGTAATCCAAATAGACAATT 539
consensus_7488#1      AAGCAATGATAAAAACAGATCTA-TGATAAACAATGTAAATA-AATACATTT---CTTTT 95
                      * ** **  *       * * ** ** ** *  ** ** *   *** **  *   *  **

consensus_7488#0      AGCCAATTGACTTACACCTTCCATACATGCACCCAATGAAAAATAATCTGTCAAATGATG 599
consensus_7488#1      AG--AATAAAAGATCATTTTGGTAAATTTTATGGATCAAAAATTGATCTGAAAAATAAAA 153
                      **  ***  *    **  **    *  *  *   *   **** * *****  **** *  

consensus_7488#0      ACTACATAATGCTTGGCGTTTAA-CACCAACTGCATAGGGTAAATCACTAGGCCAAATTA 658
consensus_7488#1      AAGAAACCATAGTGAATGTTAAAGCAAAAAGCGATAAGAAAAAATTAGTGTATGACACTT 213
                      *  * *  **  *    *** ** **  **  *   **   **** * *     * * *